Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46811 * 2 1 4 4 H 1.09000 * 109.91156 * 302.42261 * 3 2 1 5 5 N 1.47900 * 109.91838 * 63.53224 * 3 2 1 6 6 C 1.46896 * 111.00079 * 265.19588 * 5 3 2 7 7 C 1.48527 * 105.82301 * 144.67813 * 5 3 2 8 8 C 1.54939 * 103.23045 * 320.79620 * 7 5 3 9 9 C 1.53996 * 109.91320 * 181.11894 * 3 2 1 10 10 N 1.46903 * 110.30736 * 120.51020 * 9 3 2 11 11 C 1.50697 * 110.30988 * 358.43703 * 9 3 2 12 12 H 1.07988 * 120.00239 * 0.02562 * 11 9 3 13 13 C 1.37884 * 119.99773 * 179.97438 * 11 9 3 14 14 N 1.31517 * 120.00133 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00029 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46812 * 60.00285 * 15 13 11 17 17 H 1.48494 * 109.47234 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47333 * 300.00618 * 15 13 11 19 19 H 1.08999 * 109.47131 * 293.44694 * 1 2 3 20 20 H 1.09001 * 109.47423 * 53.44624 * 1 2 3 21 21 H 1.08998 * 109.47190 * 173.44368 * 1 2 3 22 22 H 1.09000 * 109.47395 * 240.00665 * 2 1 3 23 23 H 1.08997 * 109.47630 * 119.99816 * 2 1 3 24 24 H 1.09008 * 109.47040 * 54.43858 * 6 5 3 25 25 H 1.09000 * 109.47078 * 294.44023 * 6 5 3 26 26 H 1.09000 * 109.47424 * 174.43952 * 6 5 3 27 27 H 1.09003 * 110.66618 * 79.22690 * 7 5 3 28 28 H 1.09001 * 110.67131 * 202.35265 * 7 5 3 29 29 H 1.09001 * 110.72142 * 279.05400 * 8 7 5 30 30 H 1.08992 * 110.88069 * 155.84049 * 8 7 5 31 31 H 1.00900 * 110.99894 * 179.97438 * 10 9 3 32 32 H 1.00901 * 110.99638 * 303.94940 * 10 9 3 33 33 H 0.97000 * 120.00162 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6456 1.9757 -0.8651 5 7 1.6235 2.1242 1.2448 6 6 0.3744 2.8705 1.0438 7 6 2.7391 3.0388 1.5983 8 6 4.0011 2.2086 1.2539 9 6 3.5796 1.4546 -0.0283 10 7 4.0621 2.1658 -1.2197 11 6 4.1141 0.0458 -0.0087 12 1 3.4315 -0.7904 0.0206 13 6 5.4749 -0.1756 -0.0294 14 7 6.3064 0.8428 -0.0657 15 14 6.1376 -1.9219 -0.0045 16 1 5.6362 -2.6585 -1.1925 17 1 7.6219 -1.8885 -0.0323 18 1 5.6814 -2.6069 1.2316 19 1 -0.3633 0.4089 0.9428 20 1 -0.3634 0.6120 -0.8255 21 1 -0.3633 -1.0209 -0.1173 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 -0.3889 2.2012 0.6467 25 1 0.5465 3.6840 0.3390 26 1 0.0385 3.2801 1.9964 27 1 2.6989 3.9458 0.9949 28 1 2.7160 3.2811 2.6608 29 1 4.2318 1.5070 2.0556 30 1 4.8525 2.8597 1.0562 31 1 5.0705 2.1803 -1.2485 32 1 3.6818 1.7600 -2.0617 33 1 7.2637 0.6871 -0.0799 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260020602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = 5.701391 kcal Electronic energy + Delta-G solvation = -13790.861973 eV Core-core repulsion = 11658.333898 eV Total energy + Delta-G solvation = -2132.528076 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.62784 -33.97793 -32.50765 -31.13490 -28.81415 -26.75718 -25.36640 -23.31969 -21.78889 -19.63615 -18.82358 -15.94562 -15.10413 -14.67437 -14.49569 -14.17322 -13.43365 -12.88906 -12.51540 -12.32076 -12.15259 -11.76501 -11.52086 -11.35575 -10.99238 -10.68667 -10.35470 -10.26617 -9.91330 -9.79013 -9.74488 -9.32394 -9.09663 -8.45885 -7.61959 -7.10770 -5.99347 -4.12529 3.28007 3.33408 3.36438 4.38841 4.86355 5.21629 5.68982 5.74323 5.88995 5.91106 5.97415 6.16354 6.24699 6.27028 6.37531 6.39472 6.52751 6.61825 6.71264 6.89052 6.95867 7.25453 7.35695 7.42462 7.63291 7.84159 7.89396 7.99937 8.24069 8.79641 9.04491 9.21310 9.58471 10.98734 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039682 B = 0.013968 C = 0.011723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.440770 B = 2004.139740 C = 2387.809008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C 0.082 3.918 4 H 0.036 0.964 5 N -0.515 5.515 6 C 0.012 3.988 7 C 0.033 3.967 8 C -0.081 4.081 9 C 0.233 3.767 10 N -0.851 5.851 11 C -0.541 4.541 12 H 0.071 0.929 13 C 0.066 3.934 14 N -0.894 5.894 15 Si 0.890 3.110 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.277 1.277 19 H 0.056 0.944 20 H 0.039 0.961 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.018 0.982 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.357 0.643 32 H 0.309 0.691 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 1.275 0.446 7.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.131 4.131 3 C -0.027 4.027 4 H 0.054 0.946 5 N -0.239 5.239 6 C -0.138 4.138 7 C -0.095 4.095 8 C -0.120 4.120 9 C 0.141 3.859 10 N -0.382 5.382 11 C -0.581 4.581 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.203 1.203 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.175 0.825 32 H 0.117 0.883 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.204 1.599 1.180 7.473 hybrid contribution 0.997 -1.227 -0.856 1.797 sum -6.207 0.372 0.325 6.227 Atomic orbital electron populations 1.22000 0.98519 0.99867 1.00789 1.21522 0.92367 0.96807 1.02388 1.22421 0.97450 0.93640 0.89160 0.94577 1.64624 1.02108 1.25452 1.31753 1.22639 0.94275 0.97024 0.99820 1.23272 0.92935 0.94600 0.98671 1.22283 0.94119 0.97197 0.98393 1.19039 0.87410 0.91198 0.88234 1.59524 1.16718 1.58025 1.03885 1.22186 0.91814 0.93428 1.50659 0.91058 1.25027 0.97118 0.96772 0.94660 1.69714 1.02835 1.29730 1.51052 0.86687 0.77613 0.85251 0.78596 1.20450 1.21460 1.20263 0.92553 0.94196 0.94113 0.91852 0.90906 0.91471 0.96337 0.92609 0.94854 0.92275 0.92272 0.91913 0.82501 0.88288 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.48 37.16 0.31 -2.22 16 2 C -0.09 -1.85 4.11 -26.73 -0.11 -1.96 16 3 C 0.08 1.74 2.39 -66.64 -0.16 1.58 16 4 H 0.04 0.78 7.56 -51.93 -0.39 0.39 16 5 N -0.52 -10.31 4.98 -230.78 -1.15 -11.46 16 6 C 0.01 0.19 9.03 60.06 0.54 0.73 16 7 C 0.03 0.68 6.56 -1.90 -0.01 0.66 16 8 C -0.08 -1.93 5.47 -24.87 -0.14 -2.06 16 9 C 0.23 5.59 0.82 -131.39 -0.11 5.48 16 10 N -0.85 -20.19 8.78 0.91 0.01 -20.19 16 11 C -0.54 -14.02 7.21 -34.44 -0.25 -14.27 16 12 H 0.07 1.83 4.70 -52.49 -0.25 1.58 16 13 C 0.07 1.74 5.25 -17.82 -0.09 1.64 16 14 N -0.89 -24.08 10.73 55.43 0.59 -23.48 16 15 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H 0.06 0.91 6.49 -51.93 -0.34 0.57 16 20 H 0.04 0.61 7.94 -51.93 -0.41 0.20 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 1.31 7.13 -51.93 -0.37 0.94 16 23 H 0.07 1.58 7.10 -51.93 -0.37 1.21 16 24 H 0.07 1.04 5.21 -51.92 -0.27 0.77 16 25 H 0.02 0.30 7.94 -51.93 -0.41 -0.11 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.68 7.88 -51.93 -0.41 0.27 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.51 7.86 -51.93 -0.41 1.10 16 30 H 0.06 1.58 8.03 -51.93 -0.42 1.16 16 31 H 0.36 9.12 6.83 -39.29 -0.27 8.85 16 32 H 0.31 7.01 9.01 -39.29 -0.35 6.66 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 251.06 15.07 3.78 3.78 Total: -1.00 -26.25 251.06 -6.86 -33.12 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.07 Total: 12.83 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.01 Total: -10.40 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.55 Total: -55.13 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.25 -6.86 -33.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.820 kcal (2) G-P(sol) polarization free energy of solvation -26.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds