Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46811 * 2 1 4 4 H 1.09000 * 109.91156 * 302.42261 * 3 2 1 5 5 N 1.47900 * 109.91838 * 63.53224 * 3 2 1 6 6 C 1.46896 * 111.00079 * 265.19588 * 5 3 2 7 7 C 1.48527 * 105.82301 * 144.67813 * 5 3 2 8 8 C 1.54939 * 103.23045 * 320.79620 * 7 5 3 9 9 C 1.53996 * 109.91320 * 181.11894 * 3 2 1 10 10 N 1.46903 * 110.30736 * 120.51020 * 9 3 2 11 11 C 1.50697 * 110.30988 * 358.43703 * 9 3 2 12 12 H 1.07988 * 120.00239 * 0.02562 * 11 9 3 13 13 C 1.37884 * 119.99773 * 179.97438 * 11 9 3 14 14 N 1.31517 * 120.00133 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00029 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46812 * 60.00285 * 15 13 11 17 17 H 1.48494 * 109.47234 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47333 * 300.00618 * 15 13 11 19 19 H 1.08999 * 109.47131 * 293.44694 * 1 2 3 20 20 H 1.09001 * 109.47423 * 53.44624 * 1 2 3 21 21 H 1.08998 * 109.47190 * 173.44368 * 1 2 3 22 22 H 1.09000 * 109.47395 * 240.00665 * 2 1 3 23 23 H 1.08997 * 109.47630 * 119.99816 * 2 1 3 24 24 H 1.09008 * 109.47040 * 54.43858 * 6 5 3 25 25 H 1.09000 * 109.47078 * 294.44023 * 6 5 3 26 26 H 1.09000 * 109.47424 * 174.43952 * 6 5 3 27 27 H 1.09003 * 110.66618 * 79.22690 * 7 5 3 28 28 H 1.09001 * 110.67131 * 202.35265 * 7 5 3 29 29 H 1.09001 * 110.72142 * 279.05400 * 8 7 5 30 30 H 1.08992 * 110.88069 * 155.84049 * 8 7 5 31 31 H 1.00900 * 110.99894 * 179.97438 * 10 9 3 32 32 H 1.00901 * 110.99638 * 303.94940 * 10 9 3 33 33 H 0.97000 * 120.00162 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6456 1.9757 -0.8651 5 7 1.6235 2.1242 1.2448 6 6 0.3744 2.8705 1.0438 7 6 2.7391 3.0388 1.5983 8 6 4.0011 2.2086 1.2539 9 6 3.5796 1.4546 -0.0283 10 7 4.0621 2.1658 -1.2197 11 6 4.1141 0.0458 -0.0087 12 1 3.4315 -0.7904 0.0206 13 6 5.4749 -0.1756 -0.0294 14 7 6.3064 0.8428 -0.0657 15 14 6.1376 -1.9219 -0.0045 16 1 5.6362 -2.6585 -1.1925 17 1 7.6219 -1.8885 -0.0323 18 1 5.6814 -2.6069 1.2316 19 1 -0.3633 0.4089 0.9428 20 1 -0.3634 0.6120 -0.8255 21 1 -0.3633 -1.0209 -0.1173 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 -0.3889 2.2012 0.6467 25 1 0.5465 3.6840 0.3390 26 1 0.0385 3.2801 1.9964 27 1 2.6989 3.9458 0.9949 28 1 2.7160 3.2811 2.6608 29 1 4.2318 1.5070 2.0556 30 1 4.8525 2.8597 1.0562 31 1 5.0705 2.1803 -1.2485 32 1 3.6818 1.7600 -2.0617 33 1 7.2637 0.6871 -0.0799 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260020602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = -12.936789 kcal Electronic energy + Delta-G solvation = -13791.670186 eV Core-core repulsion = 11658.333898 eV Total energy + Delta-G solvation = -2133.336288 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.32777 -35.79547 -34.06216 -33.05692 -30.54255 -28.41699 -27.15078 -25.03572 -23.32789 -21.35250 -20.66125 -17.85027 -16.91190 -16.41994 -16.19255 -15.81269 -15.17551 -14.66343 -13.97725 -13.94496 -13.70600 -13.41817 -13.14308 -13.01722 -12.84504 -12.49415 -12.00764 -11.95302 -11.75279 -11.61277 -11.32288 -11.08390 -10.89347 -10.44146 -9.19787 -9.05828 -7.99004 -6.18151 1.40625 1.42889 1.48545 2.43806 3.17996 3.30978 4.09593 4.21710 4.36760 4.48142 4.52572 4.64193 4.66422 4.73479 4.82271 4.87086 4.97121 5.04423 5.21828 5.32163 5.42504 5.45409 5.57957 5.70013 5.74406 5.82136 6.14809 6.30194 6.42663 6.81908 7.11029 7.21294 7.55493 8.95806 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039682 B = 0.013968 C = 0.011723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.440770 B = 2004.139740 C = 2387.809008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C 0.087 3.913 4 H 0.035 0.965 5 N -0.522 5.522 6 C 0.011 3.989 7 C 0.043 3.957 8 C -0.078 4.078 9 C 0.220 3.780 10 N -0.845 5.845 11 C -0.551 4.551 12 H 0.070 0.930 13 C 0.023 3.977 14 N -0.913 5.913 15 Si 0.944 3.056 16 H -0.275 1.275 17 H -0.290 1.290 18 H -0.278 1.278 19 H 0.061 0.939 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.019 0.981 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.347 0.653 32 H 0.313 0.687 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 1.108 0.533 8.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 C -0.022 4.022 4 H 0.053 0.947 5 N -0.247 5.247 6 C -0.137 4.137 7 C -0.085 4.085 8 C -0.117 4.117 9 C 0.128 3.872 10 N -0.375 5.375 11 C -0.591 4.591 12 H 0.088 0.912 13 C -0.176 4.176 14 N -0.554 5.554 15 Si 0.772 3.228 16 H -0.200 1.200 17 H -0.215 1.215 18 H -0.204 1.204 19 H 0.080 0.920 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.037 0.963 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.162 0.838 32 H 0.122 0.878 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.848 1.432 1.264 9.052 hybrid contribution 1.495 -1.156 -0.877 2.083 sum -7.353 0.276 0.387 7.368 Atomic orbital electron populations 1.21888 0.95334 1.01366 1.01555 1.21389 0.95131 0.95447 1.00670 1.22308 0.95373 0.94686 0.89789 0.94724 1.64631 1.03065 1.25981 1.30993 1.22732 0.92731 0.97068 1.01197 1.23170 0.91453 0.94018 0.99877 1.22114 0.95099 0.96759 0.97728 1.19198 0.89512 0.90314 0.88163 1.59533 1.15842 1.57915 1.04189 1.22500 0.92014 0.94527 1.50047 0.91180 1.25635 0.97535 0.99640 0.94788 1.69824 1.02712 1.30999 1.51820 0.85831 0.76824 0.81767 0.78414 1.19993 1.21549 1.20403 0.92017 0.92990 0.92448 0.93053 0.93156 0.90018 0.96251 0.90524 0.94627 0.90373 0.94816 0.94114 0.83763 0.87813 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.48 71.98 0.61 -3.69 16 2 C -0.09 -3.40 4.11 30.60 0.13 -3.28 16 3 C 0.09 3.61 2.39 45.06 0.11 3.71 16 4 H 0.03 1.44 7.56 -2.39 -0.02 1.42 16 5 N -0.52 -19.82 4.98 -884.06 -4.41 -24.22 16 6 C 0.01 0.33 9.03 127.69 1.15 1.48 16 7 C 0.04 1.69 6.56 86.65 0.57 2.26 16 8 C -0.08 -3.74 5.47 31.80 0.17 -3.57 16 9 C 0.22 10.56 0.82 3.66 0.00 10.56 16 10 N -0.85 -40.23 8.78 -151.03 -1.33 -41.55 16 11 C -0.55 -28.69 7.21 25.60 0.18 -28.51 16 12 H 0.07 3.60 4.70 -2.92 -0.01 3.59 16 13 C 0.02 1.24 5.25 84.66 0.44 1.68 16 14 N -0.91 -49.90 10.73 21.45 0.23 -49.67 16 15 Si 0.94 42.92 29.54 68.60 2.03 44.95 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H 0.06 1.78 6.49 -2.39 -0.02 1.76 16 20 H 0.05 1.43 7.94 -2.39 -0.02 1.41 16 21 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.05 2.07 7.13 -2.39 -0.02 2.06 16 23 H 0.05 2.15 7.10 -2.39 -0.02 2.13 16 24 H 0.08 2.21 5.21 -2.38 -0.01 2.19 16 25 H 0.02 0.58 7.94 -2.39 -0.02 0.56 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.40 7.88 -2.39 -0.02 1.38 16 28 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.03 1.74 7.86 -2.39 -0.02 1.72 16 30 H 0.04 2.09 8.03 -2.39 -0.02 2.07 16 31 H 0.35 17.92 6.83 -89.69 -0.61 17.31 16 32 H 0.31 14.17 9.01 -89.69 -0.81 13.37 16 33 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -54.98 251.06 -0.42 -55.40 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.32 Total: 34.43 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 3.37 Total: -19.34 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -5.50 Total: -115.44 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -54.98 -0.42 -55.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.464 kcal (2) G-P(sol) polarization free energy of solvation -54.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds