Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 H 1.08992 * 110.06800 * 55.98189 * 3 2 1 5 5 N 1.47900 * 109.91476 * 294.77426 * 3 2 1 6 6 C 1.46901 * 110.99852 * 94.80605 * 5 3 2 7 7 C 1.48536 * 105.81930 * 215.31918 * 5 3 2 8 8 C 1.54933 * 103.23053 * 39.20942 * 7 5 3 9 9 C 1.53997 * 109.91440 * 177.18925 * 3 2 1 10 10 N 1.46895 * 110.30552 * 239.49139 * 9 3 2 11 11 C 1.50697 * 110.31212 * 1.65942 * 9 3 2 12 12 H 1.07996 * 119.99823 * 0.02562 * 11 9 3 13 13 C 1.37877 * 120.00068 * 180.02562 * 11 9 3 14 14 N 1.31509 * 119.99886 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99810 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47667 * 59.99575 * 15 13 11 17 17 H 1.48503 * 109.47042 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47033 * 299.99546 * 15 13 11 19 19 H 1.09003 * 109.47427 * 66.91273 * 1 2 3 20 20 H 1.09001 * 109.47530 * 186.91558 * 1 2 3 21 21 H 1.09000 * 109.47018 * 306.91356 * 1 2 3 22 22 H 1.09005 * 109.46824 * 239.99909 * 2 1 3 23 23 H 1.08998 * 109.47275 * 120.00334 * 2 1 3 24 24 H 1.09005 * 109.46965 * 65.49165 * 6 5 3 25 25 H 1.08999 * 109.47031 * 185.48438 * 6 5 3 26 26 H 1.08994 * 109.47356 * 305.48721 * 6 5 3 27 27 H 1.09003 * 110.67129 * 157.64733 * 7 5 3 28 28 H 1.08999 * 110.66807 * 280.60352 * 7 5 3 29 29 H 1.09006 * 110.72393 * 80.94132 * 8 7 5 30 30 H 1.08994 * 110.73047 * 204.23074 * 8 7 5 31 31 H 1.00902 * 111.00358 * 180.02562 * 10 9 3 32 32 H 1.00908 * 111.00216 * 303.95325 * 10 9 3 33 33 H 0.97009 * 119.99661 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6247 1.9860 0.8485 5 7 1.6585 2.1117 -1.2626 6 6 0.4043 2.8599 -1.1037 7 6 2.7837 3.0230 -1.5938 8 6 4.0354 2.1963 -1.2063 9 6 3.5782 1.4550 0.0710 10 7 4.0274 2.1778 1.2683 11 6 4.1130 0.0461 0.0778 12 1 3.4313 -0.7904 0.0355 13 6 5.4727 -0.1749 0.1382 14 7 6.3028 0.8438 0.1893 15 14 6.1355 -1.9213 0.1459 16 1 5.7139 -2.6165 -1.0967 17 1 7.6186 -1.8875 0.2148 18 1 5.6012 -2.6483 1.3255 19 1 -0.3634 0.4030 -0.9454 20 1 -0.3634 -1.0202 0.1237 21 1 -0.3633 0.6172 0.8217 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.5567 3.6796 -0.4016 25 1 0.0959 3.2611 -2.0691 26 1 -0.3701 2.1943 -0.7227 27 1 2.7904 3.2548 -2.6589 28 1 2.7252 3.9371 -1.0030 29 1 4.2883 1.4868 -1.9944 30 1 4.8791 2.8517 -0.9907 31 1 5.0347 2.1927 1.3251 32 1 3.6506 3.1136 1.2885 33 1 7.2594 0.6883 0.2314 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260020604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = 8.539434 kcal Electronic energy + Delta-G solvation = -13790.913921 eV Core-core repulsion = 11658.508912 eV Total energy + Delta-G solvation = -2132.405009 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.73885 -33.91011 -32.54798 -31.19365 -28.73207 -26.92847 -25.40790 -23.27425 -21.77469 -19.73233 -18.92583 -15.81124 -15.22420 -14.73452 -14.43690 -14.12562 -13.58231 -12.69873 -12.55458 -12.35448 -12.30411 -11.73629 -11.53736 -11.41482 -10.88002 -10.69925 -10.50404 -10.32257 -10.24729 -9.84530 -9.72865 -9.23362 -8.72150 -8.50004 -7.69045 -6.99544 -6.02798 -4.02242 3.34940 3.38917 3.42369 4.45596 4.78340 5.26563 5.64585 5.70475 5.84820 5.86378 5.95480 6.08373 6.11337 6.22560 6.31448 6.37250 6.53615 6.56951 6.67379 6.86698 6.98516 7.09240 7.24629 7.33719 7.55465 7.73086 7.87646 7.95607 8.33659 8.76960 9.10524 9.25848 9.64536 11.07948 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039542 B = 0.013991 C = 0.011698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.946097 B = 2000.804818 C = 2393.022736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 C 0.080 3.920 4 H 0.037 0.963 5 N -0.517 5.517 6 C 0.011 3.989 7 C 0.028 3.972 8 C -0.124 4.124 9 C 0.241 3.759 10 N -0.840 5.840 11 C -0.496 4.496 12 H 0.076 0.924 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.894 3.106 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.277 1.277 19 H 0.053 0.947 20 H 0.041 0.959 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.361 0.639 32 H 0.289 0.711 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 2.410 -1.561 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.127 4.127 3 C -0.028 4.028 4 H 0.056 0.944 5 N -0.241 5.241 6 C -0.138 4.138 7 C -0.100 4.100 8 C -0.165 4.165 9 C 0.149 3.851 10 N -0.372 5.372 11 C -0.535 4.535 12 H 0.093 0.907 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.722 3.278 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.203 1.203 19 H 0.072 0.928 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.180 0.820 32 H 0.098 0.902 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.219 1.486 -1.539 7.529 hybrid contribution 1.001 0.549 -0.088 1.145 sum -6.218 2.035 -1.627 6.741 Atomic orbital electron populations 1.22009 0.98631 0.99964 1.00617 1.21475 0.92188 0.96454 1.02624 1.22445 0.97702 0.94399 0.88236 0.94446 1.64639 1.01628 1.25732 1.32092 1.22646 0.94274 0.96930 0.99907 1.23315 0.93356 0.94135 0.99218 1.23180 0.93762 0.97890 1.01647 1.19101 0.87560 0.93629 0.84833 1.59372 1.18125 1.16914 1.42828 1.21372 0.91542 0.91336 1.49215 0.90660 1.24985 0.97111 0.96823 0.94468 1.69660 1.02808 1.29933 1.51705 0.86629 0.77517 0.85090 0.78540 1.20374 1.21562 1.20285 0.92776 0.94011 0.94169 0.91050 0.91190 0.96515 0.92556 0.91240 0.92001 0.95592 0.91685 0.92537 0.81997 0.90215 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.52 37.16 0.32 -2.25 16 2 C -0.09 -1.81 4.10 -26.73 -0.11 -1.92 16 3 C 0.08 1.71 2.38 -66.64 -0.16 1.56 16 4 H 0.04 0.81 7.54 -51.93 -0.39 0.42 16 5 N -0.52 -10.12 5.02 -230.79 -1.16 -11.28 16 6 C 0.01 0.19 9.07 60.07 0.54 0.73 16 7 C 0.03 0.55 6.56 -1.90 -0.01 0.53 16 8 C -0.12 -2.88 5.45 -24.87 -0.14 -3.02 16 9 C 0.24 5.79 0.82 -131.40 -0.11 5.69 16 10 N -0.84 -20.13 8.79 0.91 0.01 -20.12 16 11 C -0.50 -13.10 7.20 -34.44 -0.25 -13.35 16 12 H 0.08 1.96 4.70 -52.49 -0.25 1.71 16 13 C 0.07 1.79 5.25 -17.82 -0.09 1.70 16 14 N -0.90 -24.52 10.73 55.43 0.59 -23.92 16 15 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 22 H 0.07 1.55 7.21 -51.93 -0.37 1.17 16 23 H 0.07 1.51 7.02 -51.93 -0.36 1.14 16 24 H 0.02 0.26 7.94 -51.93 -0.41 -0.15 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.05 5.23 -51.93 -0.27 0.78 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.03 0.49 7.88 -51.93 -0.41 0.08 16 29 H 0.06 1.64 7.86 -51.93 -0.41 1.23 16 30 H 0.06 1.36 8.03 -51.93 -0.42 0.95 16 31 H 0.36 9.26 6.83 -39.29 -0.27 9.00 16 32 H 0.29 6.29 8.97 -39.29 -0.35 5.94 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 251.18 15.07 3.79 3.79 Total: -1.00 -26.75 251.18 -6.87 -33.62 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.07 Total: 12.14 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 0.00 Total: -10.33 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.56 Total: -55.32 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.75 -6.87 -33.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.157 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds