Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 H 1.08992 * 110.06800 * 55.98189 * 3 2 1 5 5 N 1.47900 * 109.91476 * 294.77426 * 3 2 1 6 6 C 1.46901 * 110.99852 * 94.80605 * 5 3 2 7 7 C 1.48536 * 105.81930 * 215.31918 * 5 3 2 8 8 C 1.54933 * 103.23053 * 39.20942 * 7 5 3 9 9 C 1.53997 * 109.91440 * 177.18925 * 3 2 1 10 10 N 1.46895 * 110.30552 * 239.49139 * 9 3 2 11 11 C 1.50697 * 110.31212 * 1.65942 * 9 3 2 12 12 H 1.07996 * 119.99823 * 0.02562 * 11 9 3 13 13 C 1.37877 * 120.00068 * 180.02562 * 11 9 3 14 14 N 1.31509 * 119.99886 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99810 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47667 * 59.99575 * 15 13 11 17 17 H 1.48503 * 109.47042 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47033 * 299.99546 * 15 13 11 19 19 H 1.09003 * 109.47427 * 66.91273 * 1 2 3 20 20 H 1.09001 * 109.47530 * 186.91558 * 1 2 3 21 21 H 1.09000 * 109.47018 * 306.91356 * 1 2 3 22 22 H 1.09005 * 109.46824 * 239.99909 * 2 1 3 23 23 H 1.08998 * 109.47275 * 120.00334 * 2 1 3 24 24 H 1.09005 * 109.46965 * 65.49165 * 6 5 3 25 25 H 1.08999 * 109.47031 * 185.48438 * 6 5 3 26 26 H 1.08994 * 109.47356 * 305.48721 * 6 5 3 27 27 H 1.09003 * 110.67129 * 157.64733 * 7 5 3 28 28 H 1.08999 * 110.66807 * 280.60352 * 7 5 3 29 29 H 1.09006 * 110.72393 * 80.94132 * 8 7 5 30 30 H 1.08994 * 110.73047 * 204.23074 * 8 7 5 31 31 H 1.00902 * 111.00358 * 180.02562 * 10 9 3 32 32 H 1.00908 * 111.00216 * 303.95325 * 10 9 3 33 33 H 0.97009 * 119.99661 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6247 1.9860 0.8485 5 7 1.6585 2.1117 -1.2626 6 6 0.4043 2.8599 -1.1037 7 6 2.7837 3.0230 -1.5938 8 6 4.0354 2.1963 -1.2063 9 6 3.5782 1.4550 0.0710 10 7 4.0274 2.1778 1.2683 11 6 4.1130 0.0461 0.0778 12 1 3.4313 -0.7904 0.0355 13 6 5.4727 -0.1749 0.1382 14 7 6.3028 0.8438 0.1893 15 14 6.1355 -1.9213 0.1459 16 1 5.7139 -2.6165 -1.0967 17 1 7.6186 -1.8875 0.2148 18 1 5.6012 -2.6483 1.3255 19 1 -0.3634 0.4030 -0.9454 20 1 -0.3634 -1.0202 0.1237 21 1 -0.3633 0.6172 0.8217 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.5567 3.6796 -0.4016 25 1 0.0959 3.2611 -2.0691 26 1 -0.3701 2.1943 -0.7227 27 1 2.7904 3.2548 -2.6589 28 1 2.7252 3.9371 -1.0030 29 1 4.2883 1.4868 -1.9944 30 1 4.8791 2.8517 -0.9907 31 1 5.0347 2.1927 1.3251 32 1 3.6506 3.1136 1.2885 33 1 7.2594 0.6883 0.2314 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260020604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = -10.670889 kcal Electronic energy + Delta-G solvation = -13791.746943 eV Core-core repulsion = 11658.508912 eV Total energy + Delta-G solvation = -2133.238031 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.41842 -35.71075 -34.10791 -33.11833 -30.43762 -28.59314 -27.16595 -24.97270 -23.30735 -21.42934 -20.75218 -17.70910 -17.05920 -16.41584 -16.06068 -15.81964 -15.31795 -14.42871 -14.13541 -13.93858 -13.80407 -13.42070 -13.22096 -12.98466 -12.76161 -12.48133 -12.23911 -12.01604 -11.83984 -11.62973 -11.28861 -11.02962 -10.59580 -10.53779 -9.21610 -8.89873 -8.05799 -6.09900 1.45250 1.45904 1.52212 2.48692 3.20238 3.28428 4.06747 4.19822 4.31645 4.42224 4.49929 4.61750 4.68403 4.73162 4.77424 4.82975 4.92283 5.01876 5.18826 5.28537 5.32749 5.37979 5.48265 5.65565 5.76539 5.90354 6.08862 6.30073 6.44694 6.78867 7.12917 7.34390 7.58892 9.02820 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039542 B = 0.013991 C = 0.011698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.946097 B = 2000.804818 C = 2393.022736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C 0.087 3.913 4 H 0.035 0.965 5 N -0.524 5.524 6 C 0.010 3.990 7 C 0.037 3.963 8 C -0.118 4.118 9 C 0.227 3.773 10 N -0.843 5.843 11 C -0.511 4.511 12 H 0.073 0.927 13 C 0.023 3.977 14 N -0.919 5.919 15 Si 0.947 3.053 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.276 1.276 19 H 0.062 0.938 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.022 0.978 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.350 0.650 32 H 0.302 0.698 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 2.583 -1.822 9.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.022 4.022 4 H 0.053 0.947 5 N -0.249 5.249 6 C -0.138 4.138 7 C -0.091 4.091 8 C -0.159 4.159 9 C 0.135 3.865 10 N -0.375 5.375 11 C -0.550 4.550 12 H 0.091 0.909 13 C -0.176 4.176 14 N -0.560 5.560 15 Si 0.774 3.226 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.202 1.202 19 H 0.081 0.919 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.167 0.833 32 H 0.111 0.889 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.846 1.664 -1.803 9.180 hybrid contribution 1.487 0.518 -0.008 1.575 sum -7.359 2.182 -1.811 7.887 Atomic orbital electron populations 1.21891 0.95336 1.01410 1.01480 1.21344 0.95055 0.95383 1.00651 1.22303 0.95590 0.95236 0.89069 0.94653 1.64628 1.02781 1.26491 1.30991 1.22741 0.92608 0.97032 1.01405 1.23226 0.91556 0.93840 1.00439 1.22954 0.94964 0.97422 1.00514 1.19234 0.89636 0.92647 0.84984 1.59324 1.17294 1.17840 1.42996 1.21736 0.91808 0.92745 1.48711 0.90917 1.25612 0.97543 0.99773 0.94650 1.69767 1.02642 1.31120 1.52449 0.85791 0.76784 0.81613 0.78406 1.20133 1.21530 1.20150 0.91934 0.92426 0.93114 0.93069 0.93149 0.95977 0.90485 0.90062 0.90297 0.94374 0.94577 0.94281 0.83288 0.88860 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.52 71.98 0.61 -3.75 16 2 C -0.09 -3.41 4.10 30.59 0.13 -3.28 16 3 C 0.09 3.58 2.38 45.06 0.11 3.69 16 4 H 0.04 1.47 7.54 -2.39 -0.02 1.45 16 5 N -0.52 -19.36 5.02 -884.08 -4.44 -23.80 16 6 C 0.01 0.30 9.07 127.69 1.16 1.46 16 7 C 0.04 1.40 6.56 86.65 0.57 1.97 16 8 C -0.12 -5.49 5.45 31.80 0.17 -5.32 16 9 C 0.23 10.92 0.82 3.66 0.00 10.93 16 10 N -0.84 -40.40 8.79 -151.04 -1.33 -41.73 16 11 C -0.51 -27.30 7.20 25.60 0.18 -27.11 16 12 H 0.07 3.83 4.70 -2.91 -0.01 3.82 16 13 C 0.02 1.23 5.25 84.66 0.44 1.67 16 14 N -0.92 -50.79 10.73 21.45 0.23 -50.56 16 15 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H 0.06 1.80 6.47 -2.39 -0.02 1.78 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.05 1.43 8.02 -2.39 -0.02 1.41 16 22 H 0.05 2.20 7.21 -2.38 -0.02 2.19 16 23 H 0.05 2.16 7.02 -2.39 -0.02 2.14 16 24 H 0.02 0.61 7.94 -2.38 -0.02 0.60 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 26 H 0.08 2.15 5.23 -2.39 -0.01 2.13 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.04 1.35 7.88 -2.39 -0.02 1.33 16 29 H 0.04 1.84 7.86 -2.38 -0.02 1.82 16 30 H 0.04 1.91 8.03 -2.39 -0.02 1.89 16 31 H 0.35 18.18 6.83 -89.69 -0.61 17.57 16 32 H 0.30 12.94 8.97 -89.69 -0.80 12.14 16 33 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 Total: -1.00 -56.37 251.18 -0.45 -56.82 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.31 Total: 33.23 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 3.38 Total: -19.75 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -5.54 Total: -116.09 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -56.37 -0.45 -56.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.153 kcal (2) G-P(sol) polarization free energy of solvation -56.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds