Wall clock time and date at job start Mon Mar 30 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47112 * 2 1 4 4 H 1.09000 * 110.06033 * 304.21435 * 3 2 1 5 5 N 1.47898 * 109.91215 * 65.41475 * 3 2 1 6 6 C 1.46901 * 110.99935 * 265.19508 * 5 3 2 7 7 C 1.48537 * 105.81826 * 144.68553 * 5 3 2 8 8 C 1.54936 * 103.22486 * 320.79167 * 7 5 3 9 9 C 1.53985 * 109.91760 * 183.00531 * 3 2 1 10 10 N 1.46900 * 110.39515 * 358.38182 * 9 3 2 11 11 C 1.50705 * 110.30767 * 120.50771 * 9 3 2 12 12 H 1.07994 * 120.00261 * 355.07750 * 11 9 3 13 13 C 1.37883 * 119.99723 * 175.07948 * 11 9 3 14 14 N 1.31510 * 120.00105 * 359.85818 * 13 11 9 15 15 Si 1.86802 * 119.99538 * 179.85674 * 13 11 9 16 16 H 1.48502 * 109.46561 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.47069 * 60.00321 * 15 13 11 18 18 H 1.48501 * 109.47344 * 299.99643 * 15 13 11 19 19 H 1.08999 * 109.46529 * 292.60641 * 1 2 3 20 20 H 1.08997 * 109.47145 * 52.60715 * 1 2 3 21 21 H 1.08998 * 109.46787 * 172.61146 * 1 2 3 22 22 H 1.09001 * 109.46952 * 240.00300 * 2 1 3 23 23 H 1.08995 * 109.47698 * 120.00383 * 2 1 3 24 24 H 1.08997 * 109.47152 * 308.54518 * 6 5 3 25 25 H 1.09002 * 109.47122 * 68.54682 * 6 5 3 26 26 H 1.09007 * 109.47297 * 188.54738 * 6 5 3 27 27 H 1.08994 * 110.66834 * 202.35905 * 7 5 3 28 28 H 1.09001 * 110.80934 * 79.29250 * 7 5 3 29 29 H 1.08998 * 110.72726 * 279.05545 * 8 7 5 30 30 H 1.09009 * 110.72448 * 155.77034 * 8 7 5 31 31 H 1.00897 * 111.00215 * 175.52625 * 10 9 3 32 32 H 1.00892 * 111.00000 * 299.48080 * 10 9 3 33 33 H 0.97002 * 120.00333 * 355.70856 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6219 1.9870 -0.8467 5 7 1.6625 2.1103 1.2645 6 6 0.4078 2.8586 1.1104 7 6 2.7887 3.0213 1.5932 8 6 4.0392 2.1951 1.2008 9 6 3.5780 1.4552 -0.0759 10 7 4.1013 0.0826 -0.0869 11 6 4.0349 2.1982 -1.3049 12 1 3.3094 2.5578 -2.0194 13 6 5.3793 2.4187 -1.5171 14 7 6.2627 1.9832 -0.6456 15 14 5.9459 3.3361 -3.0425 16 1 7.4272 3.4403 -3.0356 17 1 5.3535 4.6977 -3.0497 18 1 5.5076 2.5990 -4.2548 19 1 -0.3632 0.3950 0.9487 20 1 -0.3633 0.6241 -0.8164 21 1 -0.3633 -1.0191 -0.1322 22 1 1.8933 -0.5138 -0.8900 23 1 1.8935 -0.5138 0.8899 24 1 0.4784 3.5110 0.2401 25 1 -0.4177 2.1599 0.9748 26 1 0.2317 3.4604 2.0021 27 1 2.7987 3.2518 2.6585 28 1 2.7315 3.9362 1.0034 29 1 4.2946 1.4848 1.9871 30 1 4.8822 2.8510 0.9832 31 1 5.1028 0.0784 -0.2098 32 1 3.8379 -0.4115 0.7524 33 1 5.9662 1.5621 0.1764 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260020608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:51 Heat of formation + Delta-G solvation = -13.140083 kcal Electronic energy + Delta-G solvation = -13820.022565 eV Core-core repulsion = 11686.677462 eV Total energy + Delta-G solvation = -2133.345103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63239 -36.27520 -34.19036 -32.95404 -30.46820 -28.66421 -27.05232 -25.20340 -23.38895 -21.75473 -20.36403 -19.25910 -16.67222 -16.38676 -16.15888 -15.61084 -15.51120 -14.89048 -14.34329 -14.01102 -13.74228 -13.41746 -13.29891 -12.98244 -12.71248 -12.65352 -12.25284 -12.17604 -11.95865 -11.66071 -11.36787 -11.28282 -10.59268 -10.48062 -9.38381 -9.15544 -8.49542 -6.31939 1.52080 1.57848 1.77605 2.55118 3.12239 3.19333 3.93508 4.02343 4.15085 4.26340 4.39249 4.45902 4.54774 4.60506 4.63883 4.73629 4.88671 4.94166 5.00618 5.12288 5.20077 5.28203 5.30524 5.46441 5.64681 5.77311 6.09389 6.16292 6.23471 6.60018 6.73219 7.05228 7.46333 8.80599 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040502 B = 0.012693 C = 0.012223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.166037 B = 2205.342680 C = 2290.299633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C 0.088 3.912 4 H 0.023 0.977 5 N -0.517 5.517 6 C 0.011 3.989 7 C 0.049 3.951 8 C -0.149 4.149 9 C 0.215 3.785 10 N -0.838 5.838 11 C -0.590 4.590 12 H 0.033 0.967 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 1.107 2.893 16 H -0.283 1.283 17 H -0.277 1.277 18 H -0.278 1.278 19 H 0.063 0.937 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.013 0.987 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.330 0.670 32 H 0.318 0.682 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.773 0.067 3.220 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.021 4.021 4 H 0.041 0.959 5 N -0.241 5.241 6 C -0.137 4.137 7 C -0.079 4.079 8 C -0.190 4.190 9 C 0.123 3.877 10 N -0.369 5.369 11 C -0.629 4.629 12 H 0.052 0.948 13 C -0.214 4.214 14 N -0.574 5.574 15 Si 0.931 3.069 16 H -0.209 1.209 17 H -0.202 1.202 18 H -0.204 1.204 19 H 0.082 0.918 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.032 0.968 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.996 0.071 2.167 8.285 hybrid contribution -0.405 0.517 0.941 1.148 sum -8.401 0.588 3.108 8.977 Atomic orbital electron populations 1.21856 0.95212 1.01569 1.01428 1.21141 0.95465 0.94333 1.01210 1.22371 0.94908 0.95736 0.89067 0.95891 1.64759 1.02705 1.26353 1.30300 1.22725 0.92801 0.97803 1.00403 1.22991 0.90825 0.94039 1.00077 1.23307 0.97401 0.99689 0.98624 1.19370 0.91003 0.85390 0.91949 1.59328 1.17795 1.17329 1.42445 1.22159 0.94586 1.37961 1.08180 0.94828 1.26903 0.93429 0.96263 1.04781 1.70956 1.36973 1.39103 1.10341 0.83036 0.75771 0.75557 0.72561 1.20860 1.20242 1.20367 0.91766 0.93824 0.91914 0.92729 0.92400 0.96787 0.89561 0.90271 0.89532 0.95374 0.93587 0.93386 0.85554 0.86928 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.71 71.98 0.63 -3.54 16 2 C -0.08 -3.06 4.57 30.60 0.14 -2.92 16 3 C 0.09 3.72 2.27 45.06 0.10 3.82 16 4 H 0.02 1.07 6.84 -2.39 -0.02 1.06 16 5 N -0.52 -19.18 5.03 -884.07 -4.45 -23.63 16 6 C 0.01 0.34 9.09 127.69 1.16 1.50 16 7 C 0.05 1.94 6.55 86.65 0.57 2.51 16 8 C -0.15 -6.90 5.01 31.80 0.16 -6.74 16 9 C 0.21 10.41 0.79 3.66 0.00 10.41 16 10 N -0.84 -39.18 7.57 -151.04 -1.14 -40.33 16 11 C -0.59 -32.69 8.22 25.60 0.21 -32.48 16 12 H 0.03 1.91 7.36 -2.91 -0.02 1.89 16 13 C -0.01 -0.78 4.95 84.66 0.42 -0.36 16 14 N -0.93 -53.68 12.26 21.45 0.26 -53.41 16 15 Si 1.11 50.09 29.90 68.60 2.05 52.14 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H 0.06 1.75 6.24 -2.39 -0.01 1.73 16 20 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.05 2.20 7.72 -2.39 -0.02 2.18 16 23 H 0.06 2.10 7.05 -2.39 -0.02 2.08 16 24 H 0.01 0.44 7.85 -2.39 -0.02 0.42 16 25 H 0.09 2.31 5.46 -2.39 -0.01 2.30 16 26 H 0.08 2.05 8.13 -2.38 -0.02 2.03 16 27 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.03 1.17 8.02 -2.39 -0.02 1.15 16 29 H 0.05 2.03 7.94 -2.39 -0.02 2.01 16 30 H 0.05 2.50 6.14 -2.38 -0.01 2.49 16 31 H 0.33 16.74 6.44 -89.70 -0.58 16.16 16 32 H 0.32 13.29 7.42 -89.70 -0.67 12.62 16 33 H 0.27 15.07 4.36 -92.71 -0.40 14.67 16 Total: -1.00 -59.38 247.64 0.34 -59.04 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.22 Total: 34.00 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 3.39 Total: -27.81 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -5.33 Total: -117.37 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.05 Total: 52.14 kcal Total: -59.38 0.34 -59.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.903 kcal (2) G-P(sol) polarization free energy of solvation -59.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds