Wall clock time and date at job start Mon Mar 30 2020 02:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45593 * 2 1 4 4 N 1.46850 * 109.49532 * 119.95648 * 2 1 3 5 5 C 1.46895 * 110.99682 * 305.83104 * 4 2 1 6 6 C 1.46850 * 111.22996 * 181.71602 * 4 2 1 7 7 C 1.53036 * 109.52249 * 298.27495 * 6 4 2 8 8 C 1.53126 * 109.27716 * 59.18283 * 7 6 4 9 9 C 1.53040 * 109.46208 * 240.02746 * 2 1 3 10 10 N 1.46904 * 109.49971 * 300.78738 * 9 2 1 11 11 C 1.50704 * 109.49972 * 60.86309 * 9 2 1 12 12 H 1.07995 * 120.00433 * 2.20670 * 11 9 2 13 13 C 1.37877 * 119.99501 * 182.20308 * 11 9 2 14 14 N 1.31512 * 120.00188 * 2.51597 * 13 11 9 15 15 Si 1.86801 * 119.99793 * 182.51690 * 13 11 9 16 16 H 1.48503 * 109.47078 * 265.59573 * 15 13 11 17 17 H 1.48503 * 109.47204 * 25.59347 * 15 13 11 18 18 H 1.48499 * 109.47241 * 145.59210 * 15 13 11 19 19 H 1.08995 * 109.47012 * 179.97438 * 1 2 3 20 20 H 1.09009 * 109.46572 * 299.97136 * 1 2 3 21 21 H 1.08993 * 109.47128 * 59.96937 * 1 2 3 22 22 H 1.08995 * 109.47567 * 299.70713 * 5 4 2 23 23 H 1.09003 * 109.46971 * 59.70575 * 5 4 2 24 24 H 1.09001 * 109.47312 * 179.70466 * 5 4 2 25 25 H 1.09001 * 109.46455 * 178.26087 * 6 4 2 26 26 H 1.09001 * 109.46467 * 58.29597 * 6 4 2 27 27 H 1.08993 * 109.50904 * 299.24052 * 7 6 4 28 28 H 1.09005 * 109.53651 * 179.14057 * 7 6 4 29 29 H 1.08997 * 109.52229 * 182.44009 * 8 7 6 30 30 H 1.09004 * 109.52214 * 62.24802 * 8 7 6 31 31 H 1.00901 * 110.99194 * 186.35467 * 10 9 2 32 32 H 1.00892 * 111.00145 * 310.30663 * 10 9 2 33 33 H 0.96999 * 119.99915 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 7 2.0201 -0.6912 1.1994 5 6 1.4390 -0.1095 2.4166 6 6 3.4874 -0.6780 1.2585 7 6 4.0548 -1.4197 0.0461 8 6 3.5709 -0.7369 -1.2362 9 6 2.0399 -0.7209 -1.2500 10 7 1.5350 -2.1004 -1.2608 11 6 1.5554 0.0019 -2.4804 12 1 0.9747 0.9071 -2.3814 13 6 1.8536 -0.4924 -3.7325 14 7 2.5182 -1.6209 -3.8528 15 14 1.3135 0.4407 -5.2580 16 1 0.0120 -0.0955 -5.7313 17 1 1.1656 1.8816 -4.9304 18 1 2.3335 0.2778 -6.3249 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5134 0.8903 21 1 -0.3633 0.5143 -0.8897 22 1 1.7180 0.9419 2.4858 23 1 0.3530 -0.1953 2.3776 24 1 1.8145 -0.6433 3.2896 25 1 3.8184 -1.1702 2.1730 26 1 3.8418 0.3527 1.2524 27 1 3.7119 -2.4543 0.0591 28 1 5.1440 -1.3969 0.0818 29 1 3.9372 -1.2875 -2.1026 30 1 3.9462 0.2860 -1.2681 31 1 1.9401 -2.6276 -2.0197 32 1 1.7030 -2.5538 -0.3753 33 1 2.7283 -1.9684 -4.7337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260375939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:30 Heat of formation + Delta-G solvation = -15.543377 kcal Electronic energy + Delta-G solvation = -13922.452859 eV Core-core repulsion = 11789.003541 eV Total energy + Delta-G solvation = -2133.449318 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.41236 -36.08066 -33.87745 -33.15180 -30.18145 -28.01343 -27.17312 -26.30666 -22.79868 -22.04491 -19.71217 -18.25781 -17.05104 -16.16185 -16.07078 -15.67065 -15.19139 -14.71271 -14.37752 -14.05222 -13.40065 -13.27976 -13.02577 -12.85088 -12.80344 -12.63993 -12.35319 -12.07149 -11.85826 -11.78302 -11.54249 -10.79891 -10.60445 -10.48469 -9.10621 -8.58076 -8.01494 -6.09976 1.41852 1.44574 1.52329 2.47393 3.16705 3.25692 4.14391 4.21317 4.30280 4.37649 4.55892 4.69130 4.72224 4.73062 4.85342 4.94658 5.00095 5.02819 5.08231 5.24571 5.28771 5.43346 5.53931 5.69555 5.79908 6.09302 6.13795 6.40463 6.52306 6.81466 7.33801 7.54062 7.67405 9.03571 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047290 B = 0.013300 C = 0.011665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.944579 B = 2104.710668 C = 2399.749125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.101 3.899 3 H 0.006 0.994 4 N -0.544 5.544 5 C 0.024 3.976 6 C 0.063 3.937 7 C -0.113 4.113 8 C -0.138 4.138 9 C 0.250 3.750 10 N -0.832 5.832 11 C -0.512 4.512 12 H 0.045 0.955 13 C 0.030 3.970 14 N -0.908 5.908 15 Si 0.945 3.055 16 H -0.282 1.282 17 H -0.275 1.275 18 H -0.286 1.286 19 H 0.058 0.942 20 H 0.054 0.946 21 H 0.042 0.958 22 H 0.018 0.982 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.340 0.660 32 H 0.312 0.688 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 1.497 9.097 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.007 4.007 3 H 0.024 0.976 4 N -0.269 5.269 5 C -0.124 4.124 6 C -0.065 4.065 7 C -0.151 4.151 8 C -0.179 4.179 9 C 0.158 3.842 10 N -0.364 5.364 11 C -0.552 4.552 12 H 0.063 0.937 13 C -0.169 4.169 14 N -0.549 5.549 15 Si 0.773 3.227 16 H -0.208 1.208 17 H -0.200 1.200 18 H -0.212 1.212 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.061 0.939 22 H 0.037 0.963 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.156 0.844 32 H 0.124 0.876 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.006 1.226 8.813 8.898 hybrid contribution 1.156 1.089 -1.061 1.910 sum 1.150 2.315 7.752 8.172 Atomic orbital electron populations 1.21561 0.94085 1.01875 0.99720 1.21560 0.95941 0.93105 0.90099 0.97622 1.61910 1.07009 1.55418 1.02561 1.22449 1.00981 0.96876 0.92095 1.22064 0.87592 0.98113 0.98766 1.21603 0.99351 0.99475 0.94696 1.22252 1.00981 0.97684 0.96950 1.18262 0.87973 0.87559 0.90420 1.59099 1.66392 1.04236 1.06672 1.21354 1.33336 1.08809 0.91682 0.93707 1.25481 0.94862 0.95601 1.00970 1.69725 1.41207 1.20477 1.23471 0.85755 0.77779 0.79071 0.80118 1.20795 1.19984 1.21176 0.92339 0.92705 0.93925 0.96345 0.90774 0.90028 0.89100 0.96223 0.92498 0.91581 0.92633 0.96296 0.84366 0.87616 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 8.36 71.98 0.60 -3.96 16 2 C 0.10 4.28 1.68 44.94 0.08 4.35 16 3 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 4 N -0.54 -19.14 3.95 -897.16 -3.54 -22.69 16 5 C 0.02 0.66 9.06 127.69 1.16 1.82 16 6 C 0.06 2.06 5.47 86.32 0.47 2.53 16 7 C -0.11 -4.22 5.77 30.65 0.18 -4.05 16 8 C -0.14 -6.48 4.67 30.67 0.14 -6.34 16 9 C 0.25 12.10 0.33 2.83 0.00 12.10 16 10 N -0.83 -40.16 7.88 -154.31 -1.22 -41.37 16 11 C -0.51 -27.93 7.44 25.60 0.19 -27.74 16 12 H 0.04 2.47 6.86 -2.91 -0.02 2.45 16 13 C 0.03 1.64 5.23 84.65 0.44 2.08 16 14 N -0.91 -50.20 9.69 21.45 0.21 -49.99 16 15 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 20 H 0.05 1.81 6.32 -2.38 -0.02 1.79 16 21 H 0.04 1.83 6.72 -2.39 -0.02 1.81 16 22 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.07 1.99 6.19 -2.39 -0.01 1.98 16 24 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 25 H 0.09 2.45 8.09 -2.39 -0.02 2.43 16 26 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 2.15 7.06 -2.39 -0.02 2.14 16 28 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.06 2.92 6.43 -2.39 -0.02 2.90 16 30 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.34 17.81 6.78 -89.69 -0.61 17.21 16 32 H 0.31 13.90 6.92 -89.70 -0.62 13.28 16 33 H 0.26 13.81 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -56.77 246.45 0.61 -56.17 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.13 Total: 31.04 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 3.26 Total: -19.21 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -4.55 Total: -114.05 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -56.77 0.61 -56.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.625 kcal (2) G-P(sol) polarization free energy of solvation -56.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds