Wall clock time and date at job start Mon Mar 30 2020 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.44995 * 2 1 4 4 N 1.46842 * 109.46059 * 240.02618 * 2 1 3 5 5 C 1.46905 * 110.99963 * 54.14588 * 4 2 1 6 6 C 1.46852 * 111.19563 * 178.24211 * 4 2 1 7 7 C 1.53028 * 109.52502 * 61.74307 * 6 4 2 8 8 C 1.53118 * 109.27856 * 300.82223 * 7 6 4 9 9 C 1.53032 * 109.46227 * 119.97169 * 2 1 3 10 10 N 1.46905 * 109.53780 * 59.23687 * 9 2 1 11 11 C 1.50698 * 109.50809 * 299.13628 * 9 2 1 12 12 H 1.07997 * 119.99762 * 355.96890 * 11 9 2 13 13 C 1.37881 * 120.00379 * 175.96367 * 11 9 2 14 14 N 1.31515 * 119.99868 * 0.92435 * 13 11 9 15 15 Si 1.86801 * 119.99950 * 180.91951 * 13 11 9 16 16 H 1.48495 * 109.47203 * 269.99968 * 15 13 11 17 17 H 1.48501 * 109.46648 * 150.00191 * 15 13 11 18 18 H 1.48502 * 109.46990 * 30.00644 * 15 13 11 19 19 H 1.09004 * 109.47384 * 300.02788 * 1 2 3 20 20 H 1.09000 * 109.47319 * 60.02426 * 1 2 3 21 21 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46519 * 180.25365 * 5 4 2 23 23 H 1.09000 * 109.46901 * 300.25485 * 5 4 2 24 24 H 1.08996 * 109.46893 * 60.25706 * 5 4 2 25 25 H 1.08995 * 109.46114 * 301.72250 * 6 4 2 26 26 H 1.09001 * 109.45904 * 181.75949 * 6 4 2 27 27 H 1.09003 * 109.50467 * 180.87839 * 7 6 4 28 28 H 1.09009 * 109.50406 * 60.76079 * 7 6 4 29 29 H 1.09002 * 109.51967 * 297.74707 * 8 7 6 30 30 H 1.09000 * 109.52319 * 177.55851 * 8 7 6 31 31 H 1.00896 * 111.00663 * 173.13503 * 10 9 2 32 32 H 1.00907 * 110.99662 * 297.08915 * 10 9 2 33 33 H 0.96995 * 119.99931 * 6.27114 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6917 -1.1994 5 6 1.4372 -0.1105 -2.4165 6 6 3.4865 -0.6777 -1.2590 7 6 4.0548 -1.4187 -0.0468 8 6 3.5709 -0.7360 1.2355 9 6 2.0399 -0.7208 1.2499 10 7 1.5359 -2.1007 1.2613 11 6 1.5555 0.0018 2.4804 12 1 1.0000 0.9228 2.3822 13 6 1.8213 -0.5128 3.7317 14 7 2.5132 -1.6247 3.8520 15 14 1.1987 0.3695 5.2560 16 1 2.2189 1.3466 5.7138 17 1 0.9444 -0.6216 6.3322 18 1 -0.0623 1.0846 4.9336 19 1 -0.3634 0.5143 0.8897 20 1 -0.3634 0.5134 -0.8902 21 1 -0.3634 -1.0276 0.0005 22 1 1.8129 -0.6443 -3.2895 23 1 0.3514 -0.1970 -2.3771 24 1 1.7157 0.9410 -2.4860 25 1 3.8403 0.3533 -1.2532 26 1 3.8174 -1.1698 -2.1736 27 1 5.1439 -1.3946 -0.0832 28 1 3.7125 -2.4536 -0.0595 29 1 3.9457 0.2871 1.2672 30 1 3.9379 -1.2863 2.1019 31 1 1.9475 -2.6299 2.0153 32 1 0.5284 -2.1172 1.3158 33 1 2.9138 -2.0337 3.0690 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:33 Heat of formation + Delta-G solvation = 9.562332 kcal Electronic energy + Delta-G solvation = -13969.624247 eV Core-core repulsion = 11837.263594 eV Total energy + Delta-G solvation = -2132.360653 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.84709 -34.91023 -32.32033 -31.12553 -28.57383 -26.18304 -25.67369 -24.56294 -21.03237 -20.52954 -18.08972 -17.22084 -15.10197 -14.72679 -14.50875 -13.90145 -13.65260 -13.30831 -12.62998 -12.10216 -11.94799 -11.62830 -11.46587 -11.36451 -11.01075 -10.87386 -10.74211 -10.21615 -10.13360 -10.07177 -9.86649 -9.19993 -9.02130 -8.39100 -7.50917 -6.98115 -6.21309 -4.16173 3.39310 3.41144 3.57404 4.44464 4.66496 5.25651 5.58891 5.66901 5.76286 5.85505 6.01472 6.01745 6.13378 6.19460 6.26297 6.33283 6.40162 6.61746 6.64245 6.71860 6.88254 7.06275 7.09904 7.37211 7.49798 7.82422 7.89211 8.09531 8.31920 8.77351 8.86528 9.02815 9.55374 10.94995 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047348 B = 0.013407 C = 0.011708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.226937 B = 2087.984924 C = 2391.051386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.109 3.891 3 H 0.022 0.978 4 N -0.521 5.521 5 C 0.023 3.977 6 C 0.066 3.934 7 C -0.111 4.111 8 C -0.111 4.111 9 C 0.235 3.765 10 N -0.836 5.836 11 C -0.617 4.617 12 H 0.048 0.952 13 C 0.028 3.972 14 N -0.919 5.919 15 Si 1.065 2.935 16 H -0.289 1.289 17 H -0.284 1.284 18 H -0.290 1.290 19 H 0.063 0.937 20 H 0.033 0.967 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.011 0.989 25 H 0.016 0.984 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.333 0.667 32 H 0.320 0.680 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 2.133 -7.177 7.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.001 3.999 3 H 0.039 0.961 4 N -0.246 5.246 5 C -0.126 4.126 6 C -0.062 4.062 7 C -0.149 4.149 8 C -0.150 4.150 9 C 0.143 3.857 10 N -0.368 5.368 11 C -0.658 4.658 12 H 0.066 0.934 13 C -0.176 4.176 14 N -0.562 5.562 15 Si 0.894 3.106 16 H -0.216 1.216 17 H -0.210 1.210 18 H -0.216 1.216 19 H 0.082 0.918 20 H 0.052 0.948 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.029 0.971 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.527 1.453 -6.242 6.431 hybrid contribution 0.056 1.455 -0.753 1.639 sum -0.471 2.907 -6.995 7.589 Atomic orbital electron populations 1.21801 0.95490 1.01855 1.00069 1.21531 0.94667 0.93821 0.89912 0.96051 1.61900 1.06272 1.54893 1.01514 1.22398 1.00610 0.96226 0.93367 1.21952 0.88161 0.97571 0.98497 1.21552 0.97164 1.01240 0.94975 1.21785 0.98323 0.98698 0.96219 1.18378 0.90231 0.86788 0.90319 1.59390 1.10311 1.14712 1.52340 1.22668 1.38684 1.11551 0.92876 0.93358 1.25688 0.95143 0.95794 1.00968 1.70891 1.32583 1.17716 1.34976 0.83605 0.75895 0.75460 0.75636 1.21618 1.21016 1.21650 0.91777 0.94824 0.92041 0.92564 0.91466 0.97063 0.96581 0.92353 0.93914 0.90645 0.94079 0.91419 0.85166 0.86904 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.17 37.16 0.30 -2.36 16 2 C 0.11 2.35 1.69 -67.73 -0.11 2.24 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 N -0.52 -10.16 4.60 -234.93 -1.08 -11.24 16 5 C 0.02 0.37 9.06 60.07 0.54 0.91 16 6 C 0.07 1.23 5.46 -3.84 -0.02 1.21 16 7 C -0.11 -2.23 5.93 -26.66 -0.16 -2.39 16 8 C -0.11 -2.61 4.63 -26.61 -0.12 -2.73 16 9 C 0.23 5.62 0.29 -132.67 -0.04 5.58 16 10 N -0.84 -19.70 7.92 -0.13 0.00 -19.70 16 11 C -0.62 -16.43 7.33 -34.44 -0.25 -16.68 16 12 H 0.05 1.31 6.93 -52.49 -0.36 0.94 16 13 C 0.03 0.77 5.24 -17.82 -0.09 0.68 16 14 N -0.92 -25.97 12.61 55.43 0.70 -25.27 16 15 Si 1.07 24.58 29.90 -169.99 -5.08 19.50 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H 0.06 1.34 6.76 -51.93 -0.35 0.98 16 20 H 0.03 0.57 6.32 -51.93 -0.33 0.25 16 21 H 0.06 1.22 6.73 -51.93 -0.35 0.87 16 22 H 0.06 0.81 8.10 -51.93 -0.42 0.38 16 23 H 0.07 1.04 6.19 -51.93 -0.32 0.72 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.59 7.73 -51.92 -0.40 1.19 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.72 5.54 -51.93 -0.29 1.44 16 31 H 0.33 8.35 5.90 -39.29 -0.23 8.11 16 32 H 0.32 7.51 7.25 -39.29 -0.28 7.23 16 33 H 0.28 7.70 3.31 -40.82 -0.14 7.56 16 LS Contribution 243.70 15.07 3.67 3.67 Total: -1.00 -27.63 243.70 -6.55 -34.18 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.80 Total: 12.41 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 0.05 Total: -13.54 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.38 Total: -56.22 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.63 -6.55 -34.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.743 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds