Wall clock time and date at job start Mon Mar 30 2020 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.44995 * 2 1 4 4 N 1.46842 * 109.46059 * 240.02618 * 2 1 3 5 5 C 1.46905 * 110.99963 * 54.14588 * 4 2 1 6 6 C 1.46852 * 111.19563 * 178.24211 * 4 2 1 7 7 C 1.53028 * 109.52502 * 61.74307 * 6 4 2 8 8 C 1.53118 * 109.27856 * 300.82223 * 7 6 4 9 9 C 1.53032 * 109.46227 * 119.97169 * 2 1 3 10 10 N 1.46905 * 109.53780 * 59.23687 * 9 2 1 11 11 C 1.50698 * 109.50809 * 299.13628 * 9 2 1 12 12 H 1.07997 * 119.99762 * 355.96890 * 11 9 2 13 13 C 1.37881 * 120.00379 * 175.96367 * 11 9 2 14 14 N 1.31515 * 119.99868 * 0.92435 * 13 11 9 15 15 Si 1.86801 * 119.99950 * 180.91951 * 13 11 9 16 16 H 1.48495 * 109.47203 * 269.99968 * 15 13 11 17 17 H 1.48501 * 109.46648 * 150.00191 * 15 13 11 18 18 H 1.48502 * 109.46990 * 30.00644 * 15 13 11 19 19 H 1.09004 * 109.47384 * 300.02788 * 1 2 3 20 20 H 1.09000 * 109.47319 * 60.02426 * 1 2 3 21 21 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46519 * 180.25365 * 5 4 2 23 23 H 1.09000 * 109.46901 * 300.25485 * 5 4 2 24 24 H 1.08996 * 109.46893 * 60.25706 * 5 4 2 25 25 H 1.08995 * 109.46114 * 301.72250 * 6 4 2 26 26 H 1.09001 * 109.45904 * 181.75949 * 6 4 2 27 27 H 1.09003 * 109.50467 * 180.87839 * 7 6 4 28 28 H 1.09009 * 109.50406 * 60.76079 * 7 6 4 29 29 H 1.09002 * 109.51967 * 297.74707 * 8 7 6 30 30 H 1.09000 * 109.52319 * 177.55851 * 8 7 6 31 31 H 1.00896 * 111.00663 * 173.13503 * 10 9 2 32 32 H 1.00907 * 110.99662 * 297.08915 * 10 9 2 33 33 H 0.96995 * 119.99931 * 6.27114 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6917 -1.1994 5 6 1.4372 -0.1105 -2.4165 6 6 3.4865 -0.6777 -1.2590 7 6 4.0548 -1.4187 -0.0468 8 6 3.5709 -0.7360 1.2355 9 6 2.0399 -0.7208 1.2499 10 7 1.5359 -2.1007 1.2613 11 6 1.5555 0.0018 2.4804 12 1 1.0000 0.9228 2.3822 13 6 1.8213 -0.5128 3.7317 14 7 2.5132 -1.6247 3.8520 15 14 1.1987 0.3695 5.2560 16 1 2.2189 1.3466 5.7138 17 1 0.9444 -0.6216 6.3322 18 1 -0.0623 1.0846 4.9336 19 1 -0.3634 0.5143 0.8897 20 1 -0.3634 0.5134 -0.8902 21 1 -0.3634 -1.0276 0.0005 22 1 1.8129 -0.6443 -3.2895 23 1 0.3514 -0.1970 -2.3771 24 1 1.7157 0.9410 -2.4860 25 1 3.8403 0.3533 -1.2532 26 1 3.8174 -1.1698 -2.1736 27 1 5.1439 -1.3946 -0.0832 28 1 3.7125 -2.4536 -0.0595 29 1 3.9457 0.2871 1.2672 30 1 3.9379 -1.2863 2.1019 31 1 1.9475 -2.6299 2.0153 32 1 0.5284 -2.1172 1.3158 33 1 2.9138 -2.0337 3.0690 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260375973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:33 Heat of formation + Delta-G solvation = -9.769015 kcal Electronic energy + Delta-G solvation = -13970.462517 eV Core-core repulsion = 11837.263594 eV Total energy + Delta-G solvation = -2133.198923 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.54069 -36.68571 -33.96197 -33.03690 -30.34163 -27.88572 -27.32112 -26.35602 -22.72997 -22.18881 -19.88524 -19.16991 -16.88601 -16.35350 -16.11997 -15.70951 -15.24083 -15.03513 -14.32156 -13.78854 -13.59931 -13.44367 -13.08337 -13.02734 -12.70911 -12.63213 -12.24940 -11.99122 -11.88904 -11.80190 -11.63877 -11.11520 -10.77529 -10.38953 -9.04561 -8.96158 -8.29300 -6.29683 1.51705 1.57112 1.75364 2.54982 3.15702 3.18983 4.06000 4.12864 4.20420 4.29042 4.31699 4.57136 4.60406 4.65429 4.71934 4.78570 4.89533 4.95092 5.04258 5.13194 5.17467 5.36065 5.38861 5.53914 5.67643 5.99614 6.16300 6.34780 6.43230 6.68694 6.91801 7.04777 7.48213 8.83198 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047348 B = 0.013407 C = 0.011708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.226937 B = 2087.984924 C = 2391.051386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.112 3.888 3 H 0.003 0.997 4 N -0.532 5.532 5 C 0.022 3.978 6 C 0.066 3.934 7 C -0.104 4.104 8 C -0.109 4.109 9 C 0.226 3.774 10 N -0.823 5.823 11 C -0.626 4.626 12 H 0.037 0.963 13 C -0.015 4.015 14 N -0.941 5.941 15 Si 1.106 2.894 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.278 1.278 19 H 0.046 0.954 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.041 0.959 31 H 0.323 0.677 32 H 0.319 0.681 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 2.452 -8.543 8.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.004 3.996 3 H 0.021 0.979 4 N -0.257 5.257 5 C -0.126 4.126 6 C -0.062 4.062 7 C -0.142 4.142 8 C -0.148 4.148 9 C 0.134 3.866 10 N -0.353 5.353 11 C -0.667 4.667 12 H 0.055 0.945 13 C -0.215 4.215 14 N -0.584 5.584 15 Si 0.931 3.069 16 H -0.209 1.209 17 H -0.211 1.211 18 H -0.203 1.203 19 H 0.065 0.935 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.817 1.779 -7.640 7.887 hybrid contribution 0.165 1.361 -0.371 1.420 sum -0.652 3.139 -8.011 8.629 Atomic orbital electron populations 1.21700 0.94263 1.01782 1.00622 1.21347 0.95661 0.92495 0.90123 0.97907 1.61869 1.06909 1.55000 1.01879 1.22481 1.00956 0.96722 0.92425 1.22000 0.87709 0.97663 0.98798 1.21477 0.98595 1.00246 0.93885 1.21686 0.98149 0.97776 0.97196 1.18455 0.90586 0.86776 0.90785 1.59409 1.10093 1.14339 1.51486 1.22961 1.38189 1.11216 0.94305 0.94478 1.26793 0.95041 0.95922 1.03702 1.70957 1.33770 1.18697 1.35013 0.83049 0.76131 0.74769 0.72980 1.20857 1.21137 1.20319 0.93491 0.92004 0.92314 0.90215 0.90807 0.96527 0.96537 0.89348 0.91743 0.91690 0.95464 0.94081 0.86306 0.87000 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.17 71.98 0.59 -4.23 16 2 C 0.11 4.74 1.69 44.94 0.08 4.82 16 3 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 4 N -0.53 -19.45 4.60 -897.19 -4.13 -23.58 16 5 C 0.02 0.63 9.06 127.69 1.16 1.79 16 6 C 0.07 2.29 5.46 86.32 0.47 2.76 16 7 C -0.10 -4.03 5.93 30.64 0.18 -3.85 16 8 C -0.11 -5.15 4.63 30.67 0.14 -5.00 16 9 C 0.23 10.83 0.29 2.83 0.00 10.84 16 10 N -0.82 -38.80 7.92 -154.32 -1.22 -40.02 16 11 C -0.63 -33.63 7.33 25.60 0.19 -33.45 16 12 H 0.04 2.03 6.93 -2.91 -0.02 2.01 16 13 C -0.01 -0.81 5.24 84.66 0.44 -0.37 16 14 N -0.94 -53.89 12.61 21.45 0.27 -53.62 16 15 Si 1.11 49.66 29.90 68.60 2.05 51.72 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H 0.05 1.92 6.76 -2.38 -0.02 1.91 16 20 H 0.06 1.98 6.32 -2.39 -0.02 1.96 16 21 H 0.06 2.25 6.73 -2.39 -0.02 2.24 16 22 H 0.08 1.94 8.10 -2.39 -0.02 1.92 16 23 H 0.07 2.02 6.19 -2.39 -0.01 2.00 16 24 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 2.56 8.09 -2.39 -0.02 2.54 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.65 7.73 -2.38 -0.02 2.63 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.04 2.13 5.54 -2.39 -0.01 2.12 16 31 H 0.32 16.40 5.90 -89.70 -0.53 15.87 16 32 H 0.32 14.95 7.25 -89.69 -0.65 14.30 16 33 H 0.27 15.50 3.31 -92.71 -0.31 15.19 16 Total: -1.00 -58.28 243.70 0.61 -57.67 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.38 Total: 34.52 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.25 Total: -26.69 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -5.08 Total: -117.22 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.72 kcal Total: -58.28 0.61 -57.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.903 kcal (2) G-P(sol) polarization free energy of solvation -58.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds