Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.45045 * 2 1 4 4 N 1.46846 * 109.46341 * 119.96944 * 2 1 3 5 5 C 1.46901 * 111.00296 * 305.86005 * 4 2 1 6 6 C 1.46842 * 111.19893 * 181.75473 * 4 2 1 7 7 C 1.53029 * 109.52705 * 298.26386 * 6 4 2 8 8 C 1.53118 * 109.27858 * 59.17896 * 7 6 4 9 9 C 1.53031 * 109.46344 * 240.02859 * 2 1 3 10 10 N 1.46896 * 109.50589 * 60.86100 * 9 2 1 11 11 C 1.50702 * 109.53468 * 300.76260 * 9 2 1 12 12 H 1.08006 * 120.00088 * 2.05078 * 11 9 2 13 13 C 1.37879 * 120.00105 * 182.04433 * 11 9 2 14 14 N 1.31517 * 119.99563 * 192.67470 * 13 11 9 15 15 Si 1.86796 * 120.00085 * 12.67879 * 13 11 9 16 16 H 1.48501 * 109.47019 * 84.35482 * 15 13 11 17 17 H 1.48494 * 109.47095 * 204.35845 * 15 13 11 18 18 H 1.48500 * 109.47220 * 324.36084 * 15 13 11 19 19 H 1.09006 * 109.46802 * 300.02714 * 1 2 3 20 20 H 1.09003 * 109.46993 * 60.02145 * 1 2 3 21 21 H 1.08995 * 109.46965 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46873 * 291.83227 * 5 4 2 23 23 H 1.08996 * 109.47156 * 51.83028 * 5 4 2 24 24 H 1.09001 * 109.46909 * 171.83076 * 5 4 2 25 25 H 1.09005 * 109.46315 * 58.28303 * 6 4 2 26 26 H 1.08999 * 109.46337 * 178.25160 * 6 4 2 27 27 H 1.09001 * 109.50880 * 179.11941 * 7 6 4 28 28 H 1.09002 * 109.50677 * 299.19705 * 7 6 4 29 29 H 1.08994 * 109.52753 * 62.25294 * 8 7 6 30 30 H 1.09000 * 109.52459 * 182.37862 * 8 7 6 31 31 H 1.00898 * 111.00359 * 188.33424 * 10 9 2 32 32 H 1.00902 * 111.00323 * 312.29102 * 10 9 2 33 33 H 0.97000 * 119.99358 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0193 -0.6916 1.1994 5 6 1.4373 -0.1105 2.4166 6 6 3.4865 -0.6776 1.2591 7 6 4.0548 -1.4187 0.0468 8 6 3.5710 -0.7359 -1.2355 9 6 2.0399 -0.7208 -1.2499 10 7 1.5677 -0.0164 -2.4493 11 6 1.5229 -2.1363 -1.2615 12 1 0.8662 -2.4778 -0.4749 13 6 1.8880 -2.9954 -2.2763 14 7 1.2539 -4.1371 -2.4313 15 14 3.2834 -2.5376 -3.4307 16 1 4.5801 -2.9190 -2.8155 17 1 3.1161 -3.2569 -4.7190 18 1 3.2634 -1.0730 -3.6752 19 1 -0.3633 0.5143 0.8898 20 1 -0.3633 0.5135 -0.8902 21 1 -0.3633 -1.0276 0.0005 22 1 1.8278 0.8969 2.5608 23 1 0.3527 -0.0689 2.3166 24 1 1.6996 -0.7283 3.2754 25 1 3.8404 0.3533 1.2532 26 1 3.8175 -1.1699 2.1735 27 1 5.1439 -1.3946 0.0832 28 1 3.7131 -2.4537 0.0598 29 1 3.9457 0.2871 -1.2672 30 1 3.9389 -1.2855 -2.1019 31 1 1.7746 -0.5444 -3.2838 32 1 0.5813 0.1862 -2.3849 33 1 1.5106 -4.7412 -3.1454 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260376063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = 28.547881 kcal Electronic energy + Delta-G solvation = -14096.202860 eV Core-core repulsion = 11964.665482 eV Total energy + Delta-G solvation = -2131.537378 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.96842 -34.62610 -32.50420 -31.71848 -28.81113 -26.52872 -25.63623 -24.52850 -21.23936 -20.69896 -18.58056 -16.02969 -15.71991 -14.99847 -14.71961 -14.14888 -13.82087 -13.13403 -12.88170 -12.60938 -12.19284 -11.89737 -11.45764 -11.43132 -11.25877 -10.89577 -10.56272 -10.33873 -10.05766 -9.98556 -9.60026 -9.48894 -8.59851 -8.43524 -7.53900 -7.32256 -6.05659 -3.99667 3.27885 3.38241 3.42337 4.39987 4.56615 5.26929 5.54030 5.58100 5.70386 5.75266 5.90387 5.98300 6.04545 6.08726 6.20112 6.27798 6.38071 6.43727 6.59311 6.60555 6.71591 6.94417 7.07156 7.16772 7.23121 7.73341 7.85820 7.89367 8.30354 8.60929 8.73224 9.11931 9.59400 11.07697 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039225 B = 0.016701 C = 0.015294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.652920 B = 1676.123126 C = 1830.298987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.112 3.888 3 H 0.020 0.980 4 N -0.520 5.520 5 C 0.022 3.978 6 C 0.068 3.932 7 C -0.110 4.110 8 C -0.109 4.109 9 C 0.210 3.790 10 N -0.857 5.857 11 C -0.508 4.508 12 H 0.085 0.915 13 C 0.066 3.934 14 N -0.895 5.895 15 Si 0.873 3.127 16 H -0.284 1.284 17 H -0.307 1.307 18 H -0.249 1.249 19 H 0.038 0.962 20 H 0.054 0.946 21 H 0.077 0.923 22 H 0.012 0.988 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.018 0.982 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.331 0.669 32 H 0.324 0.676 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.178 7.407 4.998 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.003 3.997 3 H 0.038 0.962 4 N -0.244 5.244 5 C -0.126 4.126 6 C -0.060 4.060 7 C -0.148 4.148 8 C -0.147 4.147 9 C 0.119 3.881 10 N -0.390 5.390 11 C -0.548 4.548 12 H 0.102 0.898 13 C -0.135 4.135 14 N -0.533 5.533 15 Si 0.706 3.294 16 H -0.212 1.212 17 H -0.236 1.236 18 H -0.175 1.175 19 H 0.057 0.943 20 H 0.073 0.927 21 H 0.095 0.905 22 H 0.030 0.970 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.518 7.333 5.076 9.267 hybrid contribution 0.597 0.028 -0.732 0.945 sum 3.115 7.361 4.344 9.097 Atomic orbital electron populations 1.21930 0.95253 1.03211 0.99537 1.21328 0.94763 0.93225 0.90340 0.96199 1.61728 1.06461 1.54888 1.01361 1.22430 1.00643 0.96353 0.93204 1.21946 0.87905 0.97514 0.98647 1.21495 0.97280 1.02135 0.93863 1.21916 0.98382 0.97909 0.96519 1.18663 0.90312 0.92795 0.86328 1.59783 1.21162 1.52459 1.05610 1.21520 1.29021 0.94473 1.09780 0.89751 1.25045 0.96102 0.95273 0.97078 1.69948 1.39861 1.11010 1.32515 0.87352 0.83707 0.78620 0.79726 1.21187 1.23564 1.17513 0.94294 0.92728 0.90456 0.96984 0.91126 0.92236 0.96403 0.91868 0.93484 0.89540 0.94097 0.93722 0.85294 0.86355 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.24 37.16 0.31 -2.35 16 2 C 0.11 2.29 1.82 -67.72 -0.12 2.16 16 3 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 4 N -0.52 -10.16 4.33 -234.94 -1.02 -11.18 16 5 C 0.02 0.35 9.30 60.07 0.56 0.91 16 6 C 0.07 1.25 5.46 -3.84 -0.02 1.22 16 7 C -0.11 -2.24 5.84 -26.66 -0.16 -2.40 16 8 C -0.11 -2.44 4.29 -26.61 -0.11 -2.56 16 9 C 0.21 4.81 0.47 -132.68 -0.06 4.75 16 10 N -0.86 -18.87 8.78 -0.13 0.00 -18.87 16 11 C -0.51 -13.56 6.66 -34.44 -0.23 -13.79 16 12 H 0.08 2.51 6.81 -52.48 -0.36 2.15 16 13 C 0.07 1.86 5.37 -17.82 -0.10 1.76 16 14 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 15 Si 0.87 21.53 22.92 -169.99 -3.90 17.64 16 16 H -0.28 -7.05 7.06 56.52 0.40 -6.65 16 17 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 18 H -0.25 -5.79 4.90 56.52 0.28 -5.52 16 19 H 0.04 0.63 6.15 -51.93 -0.32 0.31 16 20 H 0.05 0.97 6.41 -51.93 -0.33 0.63 16 21 H 0.08 1.64 6.54 -51.93 -0.34 1.30 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.07 1.08 5.75 -51.93 -0.30 0.78 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 1.04 8.12 -51.93 -0.42 0.61 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 2.00 7.36 -51.93 -0.38 1.62 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.04 1.05 2.23 -51.93 -0.12 0.94 16 31 H 0.33 7.61 4.92 -39.29 -0.19 7.41 16 32 H 0.32 6.67 6.79 -39.29 -0.27 6.40 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 234.72 15.07 3.54 3.54 Total: -1.00 -29.19 234.72 -5.37 -34.55 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.82 Total: 10.73 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 0.06 Total: -10.28 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.25 Total: -56.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -3.90 Total: 17.64 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.19 -5.37 -34.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260376063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.099 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds