Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48534 * 111.00336 * 2 1 4 4 C 1.54933 * 103.22918 * 159.72037 * 3 2 1 5 5 C 1.54591 * 102.92615 * 322.58639 * 4 3 2 6 6 N 1.46897 * 110.31293 * 263.04516 * 5 4 3 7 7 C 1.50697 * 110.31007 * 140.86793 * 5 4 3 8 8 H 1.07997 * 120.00358 * 244.28389 * 7 5 4 9 9 C 1.37881 * 119.99647 * 64.28669 * 7 5 4 10 10 N 1.31515 * 119.99920 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 120.00209 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46733 * 89.99926 * 11 9 7 13 13 H 1.48493 * 109.47246 * 210.00608 * 11 9 7 14 14 H 1.48499 * 109.46615 * 330.00636 * 11 9 7 15 15 C 1.47906 * 111.00463 * 117.39710 * 2 1 3 16 16 C 1.53004 * 109.91246 * 333.51181 * 15 2 1 17 17 C 1.53000 * 109.91614 * 94.60380 * 15 2 1 18 18 H 1.08999 * 109.46875 * 302.60212 * 1 2 3 19 19 H 1.08997 * 109.47137 * 62.60028 * 1 2 3 20 20 H 1.09005 * 109.46683 * 182.60616 * 1 2 3 21 21 H 1.09004 * 110.66939 * 278.16097 * 3 2 1 22 22 H 1.09002 * 110.66619 * 41.28493 * 3 2 1 23 23 H 1.09008 * 110.72472 * 204.22643 * 4 3 2 24 24 H 1.09006 * 110.87315 * 81.02185 * 4 3 2 25 25 H 1.00907 * 110.99768 * 295.71525 * 6 5 4 26 26 H 1.00898 * 111.00043 * 59.66068 * 6 5 4 27 27 H 0.96998 * 119.99863 * 179.97438 * 10 9 7 28 28 H 1.08999 * 109.47330 * 61.45004 * 16 15 2 29 29 H 1.08996 * 109.46691 * 181.45732 * 16 15 2 30 30 H 1.09005 * 109.46916 * 301.44697 * 16 15 2 31 31 H 1.08998 * 109.46956 * 58.54756 * 17 15 2 32 32 H 1.09004 * 109.47257 * 178.55191 * 17 15 2 33 33 H 1.09006 * 109.46944 * 298.54834 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2984 0.1053 1.5930 6 7 3.1843 0.7026 2.9303 7 6 4.4717 -0.8387 1.5390 8 1 4.3203 -1.8735 1.2695 9 6 5.7387 -0.3814 1.8336 10 7 5.9230 0.8786 2.1623 11 14 7.1932 -1.5517 1.7673 12 1 7.7759 -1.5400 0.4015 13 1 8.2212 -1.1197 2.7479 14 1 6.7383 -2.9257 2.0997 15 6 1.9992 -0.6354 1.2259 16 6 0.9839 -0.5019 2.3628 17 6 2.2938 -2.1132 0.9614 18 1 -0.3633 0.5537 0.8657 19 1 -0.3633 0.4729 -0.9123 20 1 -0.3633 -1.0267 0.0467 21 1 2.0041 1.7977 -1.0095 22 1 1.4238 2.0205 0.6729 23 1 3.8124 2.1352 0.9716 24 1 4.1140 0.8848 -0.2773 25 1 4.0307 1.1910 3.1816 26 1 2.3838 1.3143 2.9860 27 1 6.8142 1.2003 2.3699 28 1 0.0617 -1.0141 2.0884 29 1 1.3924 -0.9494 3.2689 30 1 0.7747 0.5529 2.5411 31 1 3.0125 -2.2002 0.1465 32 1 2.7079 -2.5680 1.8613 33 1 1.3707 -2.6244 0.6878 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260581879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = 20.369013 kcal Electronic energy + Delta-G solvation = -14032.955650 eV Core-core repulsion = 11901.063610 eV Total energy + Delta-G solvation = -2131.892040 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.21569 -33.94037 -31.56485 -31.16817 -28.92846 -26.65946 -25.13347 -23.98370 -22.79492 -19.82261 -17.75985 -15.82450 -15.37445 -14.87614 -14.43131 -13.97014 -13.37021 -12.76765 -12.49189 -12.10981 -11.95086 -11.74194 -11.40809 -11.05938 -10.90452 -10.65271 -10.59191 -10.40792 -10.25344 -10.13087 -9.81383 -9.16918 -8.69238 -8.49693 -7.64667 -6.96252 -6.02374 -4.01638 3.33051 3.39952 3.43666 4.45810 4.77332 5.26930 5.64890 5.68298 5.87190 5.98892 6.00702 6.14002 6.21291 6.28348 6.34900 6.38210 6.59570 6.70654 6.78069 6.84179 6.97413 7.15287 7.26532 7.34064 7.56382 7.77373 7.91139 7.96438 8.35115 8.77865 9.11816 9.27180 9.65219 11.08234 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047261 B = 0.013635 C = 0.012784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.315081 B = 2053.061217 C = 2189.700969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.028 3.972 4 C -0.125 4.125 5 C 0.249 3.751 6 N -0.838 5.838 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.067 3.933 10 N -0.901 5.901 11 Si 0.894 3.106 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.096 3.904 16 C -0.147 4.147 17 C -0.105 4.105 18 H 0.025 0.975 19 H 0.053 0.947 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.026 0.974 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.358 0.642 26 H 0.291 0.709 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -0.214 -1.755 7.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.239 5.239 3 C -0.100 4.100 4 C -0.166 4.166 5 C 0.156 3.844 6 N -0.371 5.371 7 C -0.534 4.534 8 H 0.094 0.906 9 C -0.134 4.134 10 N -0.541 5.541 11 Si 0.722 3.278 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.199 1.199 15 C 0.007 3.993 16 C -0.205 4.205 17 C -0.163 4.163 18 H 0.044 0.956 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.178 0.822 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.778 -1.135 -1.892 7.128 hybrid contribution 0.623 0.981 0.141 1.171 sum -6.155 -0.154 -1.751 6.401 Atomic orbital electron populations 1.22474 0.90188 1.00951 0.99548 1.64809 1.06107 1.14727 1.38225 1.23285 0.98082 0.89458 0.99165 1.23185 0.92073 1.00421 1.00909 1.19029 0.90392 0.90519 0.84428 1.59470 1.07998 1.40143 1.29502 1.21426 0.90340 0.96626 1.44974 0.90648 1.24984 0.98817 0.95004 0.94602 1.69672 1.22260 1.14138 1.48018 0.86565 0.82315 0.81367 0.77520 1.20941 1.21484 1.19916 1.21875 0.95190 0.95762 0.86502 1.22144 0.97702 1.00125 1.00558 1.21645 0.98796 0.93965 1.01850 0.95635 0.92830 0.92132 0.92003 0.95605 0.92553 0.91721 0.82241 0.89879 0.93033 0.94630 0.91114 0.93960 0.91717 0.92148 0.95978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.31 60.06 0.50 0.78 16 2 N -0.51 -10.19 5.17 -223.15 -1.15 -11.34 16 3 C 0.03 0.55 6.55 -1.90 -0.01 0.54 16 4 C -0.13 -2.91 5.45 -24.88 -0.14 -3.05 16 5 C 0.25 5.92 0.81 -131.40 -0.11 5.82 16 6 N -0.84 -19.65 7.75 0.90 0.01 -19.65 16 7 C -0.49 -13.07 7.22 -34.44 -0.25 -13.31 16 8 H 0.08 1.98 4.71 -52.49 -0.25 1.73 16 9 C 0.07 1.78 5.25 -17.82 -0.09 1.69 16 10 N -0.90 -24.46 10.73 55.43 0.59 -23.86 16 11 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.10 2.02 0.89 -130.53 -0.12 1.90 16 16 C -0.15 -2.77 6.13 37.16 0.23 -2.54 16 17 C -0.10 -2.17 7.33 37.16 0.27 -1.90 16 18 H 0.03 0.40 6.29 -51.93 -0.33 0.08 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 20 H 0.06 0.94 7.74 -51.93 -0.40 0.54 16 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 23 H 0.06 1.36 8.03 -51.92 -0.42 0.94 16 24 H 0.06 1.64 7.86 -51.93 -0.41 1.23 16 25 H 0.36 9.11 6.83 -39.29 -0.27 8.84 16 26 H 0.29 6.23 7.13 -39.29 -0.28 5.95 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.03 0.60 6.62 -51.93 -0.34 0.25 16 29 H 0.07 1.42 7.83 -51.93 -0.41 1.01 16 30 H 0.04 0.78 6.26 -51.93 -0.33 0.45 16 31 H 0.06 1.42 6.96 -51.93 -0.36 1.05 16 32 H 0.06 1.28 7.29 -51.93 -0.38 0.91 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 246.70 15.07 3.72 3.72 Total: -1.00 -26.70 246.70 -6.55 -33.25 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -4.98 Total: 11.82 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 0.29 Total: -10.07 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.55 Total: -54.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.70 -6.55 -33.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260581879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.623 kcal (2) G-P(sol) polarization free energy of solvation -26.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds