Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48534 * 111.00336 * 2 1 4 4 C 1.54933 * 103.22918 * 159.72037 * 3 2 1 5 5 C 1.54591 * 102.92615 * 322.58639 * 4 3 2 6 6 N 1.46897 * 110.31293 * 263.04516 * 5 4 3 7 7 C 1.50697 * 110.31007 * 140.86793 * 5 4 3 8 8 H 1.07997 * 120.00358 * 244.28389 * 7 5 4 9 9 C 1.37881 * 119.99647 * 64.28669 * 7 5 4 10 10 N 1.31515 * 119.99920 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 120.00209 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46733 * 89.99926 * 11 9 7 13 13 H 1.48493 * 109.47246 * 210.00608 * 11 9 7 14 14 H 1.48499 * 109.46615 * 330.00636 * 11 9 7 15 15 C 1.47906 * 111.00463 * 117.39710 * 2 1 3 16 16 C 1.53004 * 109.91246 * 333.51181 * 15 2 1 17 17 C 1.53000 * 109.91614 * 94.60380 * 15 2 1 18 18 H 1.08999 * 109.46875 * 302.60212 * 1 2 3 19 19 H 1.08997 * 109.47137 * 62.60028 * 1 2 3 20 20 H 1.09005 * 109.46683 * 182.60616 * 1 2 3 21 21 H 1.09004 * 110.66939 * 278.16097 * 3 2 1 22 22 H 1.09002 * 110.66619 * 41.28493 * 3 2 1 23 23 H 1.09008 * 110.72472 * 204.22643 * 4 3 2 24 24 H 1.09006 * 110.87315 * 81.02185 * 4 3 2 25 25 H 1.00907 * 110.99768 * 295.71525 * 6 5 4 26 26 H 1.00898 * 111.00043 * 59.66068 * 6 5 4 27 27 H 0.96998 * 119.99863 * 179.97438 * 10 9 7 28 28 H 1.08999 * 109.47330 * 61.45004 * 16 15 2 29 29 H 1.08996 * 109.46691 * 181.45732 * 16 15 2 30 30 H 1.09005 * 109.46916 * 301.44697 * 16 15 2 31 31 H 1.08998 * 109.46956 * 58.54756 * 17 15 2 32 32 H 1.09004 * 109.47257 * 178.55191 * 17 15 2 33 33 H 1.09006 * 109.46944 * 298.54834 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2984 0.1053 1.5930 6 7 3.1843 0.7026 2.9303 7 6 4.4717 -0.8387 1.5390 8 1 4.3203 -1.8735 1.2695 9 6 5.7387 -0.3814 1.8336 10 7 5.9230 0.8786 2.1623 11 14 7.1932 -1.5517 1.7673 12 1 7.7759 -1.5400 0.4015 13 1 8.2212 -1.1197 2.7479 14 1 6.7383 -2.9257 2.0997 15 6 1.9992 -0.6354 1.2259 16 6 0.9839 -0.5019 2.3628 17 6 2.2938 -2.1132 0.9614 18 1 -0.3633 0.5537 0.8657 19 1 -0.3633 0.4729 -0.9123 20 1 -0.3633 -1.0267 0.0467 21 1 2.0041 1.7977 -1.0095 22 1 1.4238 2.0205 0.6729 23 1 3.8124 2.1352 0.9716 24 1 4.1140 0.8848 -0.2773 25 1 4.0307 1.1910 3.1816 26 1 2.3838 1.3143 2.9860 27 1 6.8142 1.2003 2.3699 28 1 0.0617 -1.0141 2.0884 29 1 1.3924 -0.9494 3.2689 30 1 0.7747 0.5529 2.5411 31 1 3.0125 -2.2002 0.1465 32 1 2.7079 -2.5680 1.8613 33 1 1.3707 -2.6244 0.6878 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260581879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = 1.290753 kcal Electronic energy + Delta-G solvation = -14033.782945 eV Core-core repulsion = 11901.063610 eV Total energy + Delta-G solvation = -2132.719335 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.86895 -35.73087 -33.27925 -33.01096 -30.62883 -28.33149 -26.90427 -25.53715 -24.54349 -21.57973 -19.47870 -17.71814 -17.19633 -16.43723 -16.15969 -15.75654 -14.89128 -14.55925 -14.09137 -13.90658 -13.51025 -13.47090 -13.06925 -12.80591 -12.66899 -12.43702 -12.25140 -12.00391 -11.97574 -11.72080 -11.63379 -10.97219 -10.56836 -10.52632 -9.14602 -8.82737 -8.04882 -6.08717 1.43059 1.45745 1.53840 2.48948 3.21224 3.28656 4.04661 4.19027 4.39273 4.39592 4.55061 4.63887 4.70539 4.74348 4.77101 4.95105 5.01704 5.06731 5.12526 5.19521 5.36768 5.41735 5.46348 5.63331 5.74682 5.91636 6.16591 6.34578 6.49050 6.80383 7.16534 7.38464 7.60357 9.03541 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047261 B = 0.013635 C = 0.012784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.315081 B = 2053.061217 C = 2189.700969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.039 3.961 4 C -0.120 4.120 5 C 0.237 3.763 6 N -0.837 5.837 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.023 3.977 10 N -0.918 5.918 11 Si 0.946 3.054 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.094 3.906 16 C -0.136 4.136 17 C -0.099 4.099 18 H 0.033 0.967 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.346 0.654 26 H 0.303 0.697 27 H 0.257 0.743 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -0.569 -2.078 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.251 5.251 3 C -0.089 4.089 4 C -0.161 4.161 5 C 0.144 3.856 6 N -0.369 5.369 7 C -0.549 4.549 8 H 0.089 0.911 9 C -0.175 4.175 10 N -0.559 5.559 11 Si 0.773 3.227 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.196 1.196 15 C 0.004 3.996 16 C -0.195 4.195 17 C -0.157 4.157 18 H 0.052 0.948 19 H 0.091 0.909 20 H 0.090 0.910 21 H 0.095 0.905 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.163 0.837 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.368 -1.497 -2.222 8.787 hybrid contribution 1.087 1.093 0.219 1.557 sum -7.281 -0.405 -2.002 7.562 Atomic orbital electron populations 1.22570 0.87602 1.02113 1.00926 1.64777 1.08559 1.14296 1.37469 1.23179 0.95567 0.90076 1.00098 1.22978 0.93964 0.99328 0.99843 1.19120 0.91354 0.90564 0.84537 1.59419 1.07814 1.40241 1.29456 1.21789 0.91620 0.97039 1.44467 0.91066 1.25594 1.00902 0.96223 0.94820 1.69775 1.22327 1.15085 1.48738 0.85749 0.79820 0.79879 0.77230 1.20937 1.21512 1.19643 1.21804 0.94473 0.95430 0.87901 1.22026 0.97972 1.00568 0.98952 1.21535 0.99400 0.94261 1.00474 0.94808 0.90949 0.91028 0.90508 0.94299 0.94342 0.94814 0.83694 0.88537 0.93345 0.92104 0.92601 0.93585 0.93689 0.93439 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.31 127.69 1.06 1.52 16 2 N -0.53 -19.47 5.17 -859.92 -4.45 -23.92 16 3 C 0.04 1.45 6.55 86.65 0.57 2.02 16 4 C -0.12 -5.61 5.45 31.80 0.17 -5.44 16 5 C 0.24 11.20 0.81 3.66 0.00 11.20 16 6 N -0.84 -39.00 7.75 -151.05 -1.17 -40.17 16 7 C -0.51 -27.15 7.22 25.60 0.18 -26.96 16 8 H 0.07 3.77 4.71 -2.91 -0.01 3.75 16 9 C 0.02 1.24 5.25 84.66 0.44 1.69 16 10 N -0.92 -50.61 10.73 21.45 0.23 -50.38 16 11 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 C 0.09 3.77 0.89 3.67 0.00 3.77 16 16 C -0.14 -4.79 6.13 71.98 0.44 -4.35 16 17 C -0.10 -3.96 7.33 71.98 0.53 -3.43 16 18 H 0.03 0.92 6.29 -2.39 -0.02 0.90 16 19 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 20 H 0.07 1.90 7.74 -2.38 -0.02 1.88 16 21 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16 22 H 0.04 1.37 7.96 -2.39 -0.02 1.35 16 23 H 0.04 1.88 8.03 -2.38 -0.02 1.86 16 24 H 0.03 1.73 7.86 -2.38 -0.02 1.71 16 25 H 0.35 17.74 6.83 -89.69 -0.61 17.13 16 26 H 0.30 12.66 7.13 -89.70 -0.64 12.02 16 27 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.06 1.82 6.62 -2.39 -0.02 1.80 16 29 H 0.05 2.12 7.83 -2.39 -0.02 2.10 16 30 H 0.05 1.56 6.26 -2.38 -0.01 1.54 16 31 H 0.04 1.94 6.96 -2.39 -0.02 1.92 16 32 H 0.05 1.98 7.29 -2.38 -0.02 1.96 16 33 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -56.06 246.70 -0.10 -56.17 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.15 Total: 32.43 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 3.41 Total: -19.97 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -5.39 Total: -114.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -56.06 -0.10 -56.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260581879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.458 kcal (2) G-P(sol) polarization free energy of solvation -56.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds