Wall clock time and date at job start Mon Mar 30 2020 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46748 * 2 1 4 4 N 1.46901 * 109.46681 * 179.97438 * 3 2 1 5 5 C 1.48564 * 111.00128 * 290.12398 * 4 3 2 6 6 C 1.54378 * 104.59638 * 200.96512 * 5 4 3 7 7 C 1.54260 * 105.06215 * 23.84988 * 6 5 4 8 8 N 1.46898 * 110.32660 * 241.00406 * 7 6 5 9 9 C 1.50700 * 110.32684 * 118.89742 * 7 6 5 10 10 H 1.07994 * 120.00280 * 243.78311 * 9 7 6 11 11 C 1.37883 * 119.99809 * 63.77788 * 9 7 6 12 12 N 1.31515 * 119.99822 * 351.81528 * 11 9 7 13 13 Si 1.86796 * 119.99836 * 171.80977 * 11 9 7 14 14 H 1.48501 * 109.47110 * 269.99921 * 13 11 9 15 15 H 1.48498 * 109.47049 * 150.00645 * 13 11 9 16 16 H 1.48489 * 109.47289 * 30.00295 * 13 11 9 17 17 C 1.48565 * 110.99769 * 174.70618 * 4 3 2 18 18 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 19 19 H 1.08992 * 109.46852 * 300.00212 * 1 2 3 20 20 H 1.09002 * 109.46817 * 59.99977 * 1 2 3 21 21 H 1.08994 * 109.47525 * 240.00113 * 2 1 3 22 22 H 1.08996 * 109.47162 * 119.99822 * 2 1 3 23 23 H 1.08995 * 109.47113 * 60.00347 * 3 2 1 24 24 H 1.08996 * 109.47144 * 299.99833 * 3 2 1 25 25 H 1.08998 * 110.41044 * 82.18425 * 5 4 3 26 26 H 1.09005 * 110.40776 * 319.73842 * 5 4 3 27 27 H 1.09003 * 110.32396 * 264.95826 * 6 5 4 28 28 H 1.08990 * 110.32834 * 142.74792 * 6 5 4 29 29 H 1.00895 * 111.00031 * 297.72762 * 8 7 6 30 30 H 1.00907 * 111.00148 * 61.68380 * 8 7 6 31 31 H 0.96998 * 120.00202 * 354.49213 * 12 11 9 32 32 H 1.08998 * 110.41013 * 40.26210 * 17 4 3 33 33 H 1.08997 * 110.41255 * 277.81561 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0409 0.9656 1.3032 6 6 5.4827 1.5145 1.3592 7 6 5.4831 2.7368 0.4181 8 7 6.4355 2.5337 -0.6816 9 6 5.8289 3.9874 1.1845 10 1 5.1043 4.7830 1.2750 11 6 7.0705 4.1158 1.7703 12 7 7.8928 3.0899 1.8001 13 14 7.5845 5.7470 2.5215 14 1 8.2600 6.5756 1.4908 15 1 8.5193 5.5002 3.6487 16 1 6.3832 6.4619 3.0221 17 6 4.0414 2.8236 -0.1273 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.8935 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 4.0474 -0.1239 1.3351 26 1 3.4489 1.3674 2.1256 27 1 6.1879 0.7631 1.0040 28 1 5.7326 1.8191 2.3754 29 1 7.3775 2.4425 -0.3320 30 1 6.1780 1.7336 -1.2400 31 1 7.5974 2.2222 1.4826 32 1 3.4496 3.5161 0.4712 33 1 4.0484 3.1330 -1.1724 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260731298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:21 Heat of formation + Delta-G solvation = -6.295705 kcal Electronic energy + Delta-G solvation = -13285.897039 eV Core-core repulsion = 11152.848730 eV Total energy + Delta-G solvation = -2133.048309 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.62540 -35.23864 -32.82368 -30.71019 -28.96300 -27.20569 -25.17396 -23.56282 -21.57280 -20.04827 -19.10560 -17.08689 -15.36187 -14.96541 -14.53926 -13.97323 -13.74726 -13.50761 -13.05981 -12.77716 -12.12213 -11.74702 -11.65780 -11.51314 -11.08095 -10.82081 -10.61568 -10.48487 -10.44010 -10.33510 -10.08972 -9.79074 -8.64960 -8.36719 -7.93443 -7.22465 -6.33134 -4.09484 3.44967 3.46978 3.62635 4.48219 4.60291 5.06772 5.18474 5.26705 5.44174 5.62154 5.64274 5.82171 5.83290 5.92587 6.04392 6.07917 6.11200 6.27566 6.39579 6.40374 6.55746 6.74005 6.84343 6.88667 7.27323 7.37610 7.64711 8.08979 8.36105 8.66576 8.79393 8.98626 9.61744 10.99252 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062821 B = 0.008796 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.604620 B = 3182.566965 C = 3282.166131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.045 3.955 4 N -0.518 5.518 5 C 0.037 3.963 6 C -0.147 4.147 7 C 0.231 3.769 8 N -0.840 5.840 9 C -0.578 4.578 10 H 0.051 0.949 11 C 0.031 3.969 12 N -0.915 5.915 13 Si 1.068 2.932 14 H -0.286 1.286 15 H -0.287 1.287 16 H -0.290 1.290 17 C 0.052 3.948 18 H 0.052 0.948 19 H 0.051 0.949 20 H 0.053 0.947 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.341 0.659 30 H 0.308 0.692 31 H 0.271 0.729 32 H 0.039 0.961 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 -4.473 -1.560 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.084 4.084 4 N -0.242 5.242 5 C -0.091 4.091 6 C -0.188 4.188 7 C 0.139 3.861 8 N -0.370 5.370 9 C -0.617 4.617 10 H 0.069 0.931 11 C -0.174 4.174 12 N -0.554 5.554 13 Si 0.897 3.103 14 H -0.213 1.213 15 H -0.212 1.212 16 H -0.217 1.217 17 C -0.076 4.076 18 H 0.071 0.929 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.157 0.843 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.377 -3.298 -1.540 9.134 hybrid contribution -1.448 -1.225 0.436 1.946 sum -9.825 -4.523 -1.105 10.872 Atomic orbital electron populations 1.21742 0.96123 1.01288 1.01596 1.21478 0.94833 0.96961 1.02355 1.22257 0.89443 0.96458 1.00275 1.65405 1.06368 1.21440 1.31009 1.23059 0.97176 0.98835 0.90046 1.23378 0.93327 0.98932 1.03142 1.19177 0.87765 0.92687 0.86478 1.59232 1.06831 1.45322 1.25648 1.21890 1.02743 1.02569 1.34500 0.93087 1.25750 0.92946 1.03922 0.94746 1.70824 1.37867 1.01311 1.45373 0.83569 0.75586 0.74700 0.76490 1.21271 1.21242 1.21655 1.23150 0.96668 0.87337 1.00438 0.92880 0.93021 0.92815 0.91457 0.92304 0.95250 0.91434 0.91985 0.94786 0.93835 0.91123 0.84349 0.88197 0.91593 0.94308 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.58 5.99 -26.73 -0.16 -1.74 16 3 C 0.04 0.71 4.81 -3.82 -0.02 0.69 16 4 N -0.52 -9.95 5.37 -229.96 -1.24 -11.18 16 5 C 0.04 0.73 5.74 -2.18 -0.01 0.72 16 6 C -0.15 -3.40 4.62 -25.35 -0.12 -3.51 16 7 C 0.23 5.69 0.87 -131.37 -0.11 5.58 16 8 N -0.84 -20.36 8.80 0.93 0.01 -20.35 16 9 C -0.58 -16.04 8.02 -34.44 -0.28 -16.31 16 10 H 0.05 1.43 7.57 -52.49 -0.40 1.04 16 11 C 0.03 0.85 5.05 -17.82 -0.09 0.76 16 12 N -0.92 -26.41 12.52 55.43 0.69 -25.71 16 13 Si 1.07 25.07 29.91 -169.99 -5.08 19.98 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.05 1.14 5.67 -2.18 -0.01 1.13 16 18 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 19 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.81 7.25 -51.93 -0.38 0.43 16 23 H 0.03 0.48 7.88 -51.93 -0.41 0.07 16 24 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 25 H 0.06 1.11 7.76 -51.93 -0.40 0.71 16 26 H 0.03 0.67 7.82 -51.93 -0.41 0.26 16 27 H 0.04 0.99 7.66 -51.93 -0.40 0.59 16 28 H 0.07 1.80 7.14 -51.93 -0.37 1.43 16 29 H 0.34 8.74 6.61 -39.29 -0.26 8.48 16 30 H 0.31 6.78 8.98 -39.29 -0.35 6.43 16 31 H 0.27 7.62 4.44 -40.82 -0.18 7.44 16 32 H 0.04 0.87 7.55 -51.93 -0.39 0.48 16 33 H 0.07 1.59 8.06 -51.93 -0.42 1.17 16 LS Contribution 258.02 15.07 3.89 3.89 Total: -1.00 -28.53 258.02 -7.44 -35.97 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.27 Total: 11.35 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -0.43 Total: -13.94 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.53 Total: -57.24 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.53 -7.44 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260731298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.673 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds