Wall clock time and date at job start Mon Mar 30 2020 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46748 * 2 1 4 4 N 1.46901 * 109.46681 * 179.97438 * 3 2 1 5 5 C 1.48564 * 111.00128 * 290.12398 * 4 3 2 6 6 C 1.54378 * 104.59638 * 200.96512 * 5 4 3 7 7 C 1.54260 * 105.06215 * 23.84988 * 6 5 4 8 8 N 1.46898 * 110.32660 * 241.00406 * 7 6 5 9 9 C 1.50700 * 110.32684 * 118.89742 * 7 6 5 10 10 H 1.07994 * 120.00280 * 243.78311 * 9 7 6 11 11 C 1.37883 * 119.99809 * 63.77788 * 9 7 6 12 12 N 1.31515 * 119.99822 * 351.81528 * 11 9 7 13 13 Si 1.86796 * 119.99836 * 171.80977 * 11 9 7 14 14 H 1.48501 * 109.47110 * 269.99921 * 13 11 9 15 15 H 1.48498 * 109.47049 * 150.00645 * 13 11 9 16 16 H 1.48489 * 109.47289 * 30.00295 * 13 11 9 17 17 C 1.48565 * 110.99769 * 174.70618 * 4 3 2 18 18 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 19 19 H 1.08992 * 109.46852 * 300.00212 * 1 2 3 20 20 H 1.09002 * 109.46817 * 59.99977 * 1 2 3 21 21 H 1.08994 * 109.47525 * 240.00113 * 2 1 3 22 22 H 1.08996 * 109.47162 * 119.99822 * 2 1 3 23 23 H 1.08995 * 109.47113 * 60.00347 * 3 2 1 24 24 H 1.08996 * 109.47144 * 299.99833 * 3 2 1 25 25 H 1.08998 * 110.41044 * 82.18425 * 5 4 3 26 26 H 1.09005 * 110.40776 * 319.73842 * 5 4 3 27 27 H 1.09003 * 110.32396 * 264.95826 * 6 5 4 28 28 H 1.08990 * 110.32834 * 142.74792 * 6 5 4 29 29 H 1.00895 * 111.00031 * 297.72762 * 8 7 6 30 30 H 1.00907 * 111.00148 * 61.68380 * 8 7 6 31 31 H 0.96998 * 120.00202 * 354.49213 * 12 11 9 32 32 H 1.08998 * 110.41013 * 40.26210 * 17 4 3 33 33 H 1.08997 * 110.41255 * 277.81561 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0409 0.9656 1.3032 6 6 5.4827 1.5145 1.3592 7 6 5.4831 2.7368 0.4181 8 7 6.4355 2.5337 -0.6816 9 6 5.8289 3.9874 1.1845 10 1 5.1043 4.7830 1.2750 11 6 7.0705 4.1158 1.7703 12 7 7.8928 3.0899 1.8001 13 14 7.5845 5.7470 2.5215 14 1 8.2600 6.5756 1.4908 15 1 8.5193 5.5002 3.6487 16 1 6.3832 6.4619 3.0221 17 6 4.0414 2.8236 -0.1273 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.8935 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 4.0474 -0.1239 1.3351 26 1 3.4489 1.3674 2.1256 27 1 6.1879 0.7631 1.0040 28 1 5.7326 1.8191 2.3754 29 1 7.3775 2.4425 -0.3320 30 1 6.1780 1.7336 -1.2400 31 1 7.5974 2.2222 1.4826 32 1 3.4496 3.5161 0.4712 33 1 4.0484 3.1330 -1.1724 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260731298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:21 Heat of formation + Delta-G solvation = -26.823173 kcal Electronic energy + Delta-G solvation = -13286.787177 eV Core-core repulsion = 11152.848730 eV Total energy + Delta-G solvation = -2133.938447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.33018 -36.83389 -34.35180 -32.57406 -30.62714 -28.99587 -26.81674 -25.31074 -22.88241 -21.54694 -21.00709 -19.07744 -16.88188 -16.54841 -16.00532 -15.76003 -15.61550 -15.17127 -14.40955 -14.30002 -13.80211 -13.40775 -13.19208 -12.81180 -12.71840 -12.53196 -12.26096 -12.16682 -11.93516 -11.87294 -11.67464 -11.45856 -10.69631 -10.43996 -9.52518 -9.14926 -8.51669 -6.29232 1.54445 1.61245 1.78815 2.57501 3.08008 3.15219 3.86548 3.91624 4.01538 4.17156 4.24092 4.36580 4.46768 4.57767 4.65371 4.72624 4.78487 4.82203 4.99580 5.01062 5.07308 5.16057 5.26367 5.36388 5.39816 5.68534 6.10003 6.10476 6.18900 6.62603 6.72266 7.04561 7.49386 8.82042 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062821 B = 0.008796 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.604620 B = 3182.566965 C = 3282.166131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C 0.042 3.958 4 N -0.515 5.515 5 C 0.046 3.954 6 C -0.139 4.139 7 C 0.217 3.783 8 N -0.841 5.841 9 C -0.597 4.597 10 H 0.039 0.961 11 C -0.012 4.012 12 N -0.935 5.935 13 Si 1.110 2.890 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.277 1.277 17 C 0.061 3.939 18 H 0.068 0.932 19 H 0.052 0.948 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.027 0.973 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.332 0.668 30 H 0.320 0.680 31 H 0.267 0.733 32 H 0.028 0.972 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.802 -4.877 -1.800 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.087 4.087 4 N -0.239 5.239 5 C -0.082 4.082 6 C -0.180 4.180 7 C 0.125 3.875 8 N -0.371 5.371 9 C -0.636 4.636 10 H 0.057 0.943 11 C -0.212 4.212 12 N -0.574 5.574 13 Si 0.934 3.066 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.202 1.202 17 C -0.068 4.068 18 H 0.087 0.913 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.641 -3.719 -1.796 10.488 hybrid contribution -1.094 -1.125 0.483 1.641 sum -10.735 -4.844 -1.313 11.850 Atomic orbital electron populations 1.21706 0.93999 1.02515 1.02048 1.21438 0.96614 0.94758 1.02216 1.22407 0.87080 0.98591 1.00580 1.65414 1.08663 1.19272 1.30515 1.22988 0.94766 1.00071 0.90396 1.23156 0.95643 0.98379 1.00825 1.19261 0.89204 0.92193 0.86823 1.59142 1.06189 1.46099 1.25712 1.22203 1.02791 1.03518 1.35101 0.94312 1.26937 0.93240 1.06130 0.94896 1.70898 1.38372 1.01633 1.46490 0.83004 0.75828 0.71693 0.76071 1.20400 1.21048 1.20242 1.22935 0.95106 0.88864 0.99852 0.91301 0.92839 0.92141 0.91466 0.92561 0.95480 0.90588 0.89595 0.94785 0.94078 0.94172 0.85426 0.86800 0.92091 0.95379 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.11 -2.69 5.99 30.60 0.18 -2.51 16 3 C 0.04 1.24 4.81 86.30 0.42 1.65 16 4 N -0.51 -18.91 5.37 -881.47 -4.73 -23.64 16 5 C 0.05 1.75 5.74 86.45 0.50 2.24 16 6 C -0.14 -6.44 4.62 31.49 0.15 -6.29 16 7 C 0.22 10.72 0.87 3.68 0.00 10.72 16 8 N -0.84 -40.71 8.80 -150.97 -1.33 -42.04 16 9 C -0.60 -33.44 8.02 25.60 0.21 -33.23 16 10 H 0.04 2.20 7.57 -2.91 -0.02 2.18 16 11 C -0.01 -0.69 5.05 84.66 0.43 -0.26 16 12 N -0.93 -54.42 12.52 21.45 0.27 -54.16 16 13 Si 1.11 50.45 29.91 68.60 2.05 52.50 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 C 0.06 2.63 5.67 86.45 0.49 3.12 16 18 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 19 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 22 H 0.06 1.38 7.25 -2.39 -0.02 1.36 16 23 H 0.03 0.83 7.88 -2.39 -0.02 0.81 16 24 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 25 H 0.09 2.88 7.76 -2.39 -0.02 2.86 16 26 H 0.03 1.29 7.82 -2.38 -0.02 1.27 16 27 H 0.04 1.88 7.66 -2.39 -0.02 1.86 16 28 H 0.04 2.07 7.14 -2.39 -0.02 2.05 16 29 H 0.33 17.15 6.61 -89.70 -0.59 16.55 16 30 H 0.32 13.93 8.98 -89.69 -0.81 13.13 16 31 H 0.27 15.24 4.44 -92.71 -0.41 14.83 16 32 H 0.03 1.26 7.55 -2.39 -0.02 1.24 16 33 H 0.07 3.07 8.06 -2.39 -0.02 3.05 16 Total: -1.00 -59.98 258.02 -0.62 -60.60 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.05 Total: 33.26 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 3.08 Total: -26.52 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.79 Total: -119.84 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -59.98 -0.62 -60.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260731298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.775 kcal (2) G-P(sol) polarization free energy of solvation -59.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds