Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 N 1.46907 * 109.47049 * 174.74009 * 3 2 1 5 5 C 1.48563 * 110.99609 * 174.68841 * 4 3 2 6 6 C 1.54380 * 104.59088 * 200.96217 * 5 4 3 7 7 C 1.54260 * 105.06302 * 23.85108 * 6 5 4 8 8 N 1.46898 * 110.32314 * 118.89258 * 7 6 5 9 9 C 1.50699 * 110.32944 * 241.00489 * 7 6 5 10 10 H 1.07997 * 120.00476 * 117.17064 * 9 7 6 11 11 C 1.37874 * 119.99592 * 297.16943 * 9 7 6 12 12 N 1.31516 * 120.00516 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 119.99934 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47258 * 90.00250 * 13 11 9 15 15 H 1.48504 * 109.47247 * 210.00243 * 13 11 9 16 16 H 1.48507 * 109.47340 * 330.00208 * 13 11 9 17 17 C 1.48559 * 110.99750 * 59.27158 * 4 3 2 18 18 H 1.09001 * 109.47166 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.47153 * 299.99881 * 1 2 3 20 20 H 1.09001 * 109.47246 * 59.99296 * 1 2 3 21 21 H 1.09007 * 109.47076 * 240.00371 * 2 1 3 22 22 H 1.09001 * 109.47246 * 120.00704 * 2 1 3 23 23 H 1.09004 * 109.47056 * 54.74459 * 3 2 1 24 24 H 1.08995 * 109.47520 * 294.74116 * 3 2 1 25 25 H 1.08995 * 110.41289 * 82.18657 * 5 4 3 26 26 H 1.08997 * 110.51281 * 319.78506 * 5 4 3 27 27 H 1.09006 * 110.32413 * 264.96035 * 6 5 4 28 28 H 1.09002 * 110.32773 * 142.75230 * 6 5 4 29 29 H 1.00901 * 110.99983 * 61.45757 * 8 7 6 30 30 H 1.00904 * 111.00089 * 185.40878 * 8 7 6 31 31 H 0.96998 * 120.00478 * 179.97438 * 12 11 9 32 32 H 1.09000 * 110.40946 * 40.25696 * 17 4 3 33 33 H 1.09003 * 110.41204 * 277.82150 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5036 1.4443 0.1270 5 6 4.0469 2.8215 0.0029 6 6 5.5280 2.6219 -0.3841 7 6 5.5867 1.2264 -1.0390 8 7 6.0458 1.3345 -2.4301 9 6 6.5001 0.3187 -0.2562 10 1 6.1051 -0.5691 0.2150 11 6 7.8403 0.6218 -0.1417 12 7 8.3214 1.7032 -0.7151 13 14 8.9725 -0.5028 0.8291 14 1 9.5382 -1.5362 -0.0751 15 1 10.0764 0.2960 1.4197 16 1 8.2033 -1.1625 1.9147 17 6 4.1360 0.7002 -0.9926 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 1.8934 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6019 1.9828 0.8392 24 1 1.7557 1.9284 -0.9333 25 1 3.9702 3.3475 0.9544 26 1 3.5208 3.3708 -0.7778 27 1 6.1586 2.6498 0.5046 28 1 5.8401 3.3871 -1.0949 29 1 6.9763 1.7223 -2.4747 30 1 6.0042 0.4400 -2.8952 31 1 9.2641 1.9166 -0.6342 32 1 3.6232 0.9158 -1.9299 33 1 4.1263 -0.3709 -0.7906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260731299.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = -7.873477 kcal Electronic energy + Delta-G solvation = -13304.081052 eV Core-core repulsion = 11170.964326 eV Total energy + Delta-G solvation = -2133.116726 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.30160 -34.84363 -32.70675 -30.86368 -28.67225 -26.88369 -25.21492 -23.89826 -21.04546 -20.05224 -18.74284 -16.42436 -15.22577 -15.05078 -14.55738 -14.00518 -13.58271 -13.29132 -12.89223 -12.44011 -12.09429 -11.79405 -11.47914 -11.24616 -10.95156 -10.76957 -10.58426 -10.50744 -10.19780 -10.08388 -9.85324 -9.56294 -9.15335 -8.46717 -7.66346 -7.15054 -5.98653 -4.11124 3.27839 3.35518 3.40516 4.41037 4.72469 5.18851 5.25043 5.32546 5.56986 5.79838 5.85326 5.95341 6.01187 6.14901 6.16334 6.24423 6.38340 6.42295 6.55370 6.63588 6.64644 6.98905 7.26860 7.31134 7.65982 7.84256 7.88340 7.91723 8.25699 8.83085 9.05161 9.19354 9.58466 10.99953 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044924 B = 0.010097 C = 0.009272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.123386 B = 2772.349200 C = 3019.261018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.045 3.955 4 N -0.505 5.505 5 C 0.033 3.967 6 C -0.083 4.083 7 C 0.233 3.767 8 N -0.850 5.850 9 C -0.524 4.524 10 H 0.055 0.945 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.050 3.950 18 H 0.052 0.948 19 H 0.052 0.948 20 H 0.049 0.951 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.025 0.975 25 H 0.061 0.939 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.356 0.644 30 H 0.310 0.690 31 H 0.262 0.738 32 H 0.028 0.972 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -0.648 0.272 9.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.084 4.084 4 N -0.228 5.228 5 C -0.095 4.095 6 C -0.122 4.122 7 C 0.142 3.858 8 N -0.380 5.380 9 C -0.564 4.564 10 H 0.073 0.927 11 C -0.138 4.138 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.078 4.078 18 H 0.071 0.929 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.172 0.828 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.480 -0.256 0.687 9.509 hybrid contribution 1.223 -0.862 0.121 1.501 sum -8.257 -1.119 0.808 8.372 Atomic orbital electron populations 1.21737 0.96259 1.01228 1.01381 1.21528 0.94740 0.97029 1.02713 1.22277 0.90213 0.96525 0.99350 1.65365 1.03245 1.10980 1.43249 1.23144 0.97882 0.89817 0.98672 1.22138 0.91577 0.98170 1.00326 1.18964 0.88865 0.91722 0.86293 1.59544 1.33461 1.28319 1.16665 1.21822 0.93008 1.08920 1.32658 0.92662 1.24986 0.98183 0.95088 0.95519 1.69746 1.14143 1.24815 1.44721 0.86596 0.80351 0.80632 0.80403 1.20907 1.21295 1.19917 1.23155 0.96513 0.97907 0.90207 0.92931 0.92931 0.93140 0.92058 0.91208 0.91699 0.95703 0.92008 0.95509 0.91452 0.93064 0.82778 0.88117 0.92806 0.95393 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.81 5.64 -26.73 -0.15 -1.96 16 3 C 0.05 0.75 4.93 -3.82 -0.02 0.73 16 4 N -0.50 -10.36 5.45 -229.97 -1.25 -11.61 16 5 C 0.03 0.68 6.49 -2.18 -0.01 0.66 16 6 C -0.08 -2.00 5.58 -25.35 -0.14 -2.15 16 7 C 0.23 5.75 0.87 -131.37 -0.11 5.63 16 8 N -0.85 -20.37 8.77 0.93 0.01 -20.37 16 9 C -0.52 -14.18 8.04 -34.44 -0.28 -14.46 16 10 H 0.06 1.53 7.55 -52.49 -0.40 1.14 16 11 C 0.06 1.72 5.04 -17.82 -0.09 1.63 16 12 N -0.89 -24.47 10.69 55.43 0.59 -23.87 16 13 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.05 1.11 4.56 -2.18 -0.01 1.10 16 18 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.94 7.21 -51.93 -0.37 0.57 16 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.02 0.41 7.97 -51.93 -0.41 0.00 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.03 0.52 7.90 -51.93 -0.41 0.11 16 27 H 0.07 1.78 7.33 -51.93 -0.38 1.40 16 28 H 0.05 1.26 7.95 -51.93 -0.41 0.85 16 29 H 0.36 9.13 7.00 -39.29 -0.28 8.85 16 30 H 0.31 7.08 9.04 -39.29 -0.35 6.73 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.03 0.60 7.89 -51.93 -0.41 0.19 16 33 H 0.06 1.45 7.33 -51.93 -0.38 1.07 16 LS Contribution 261.15 15.07 3.94 3.94 Total: -1.00 -27.18 261.15 -7.67 -34.85 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.48 Total: 11.01 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.45 Total: -10.17 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.65 Total: -55.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.18 -7.67 -34.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260731299.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.973 kcal (2) G-P(sol) polarization free energy of solvation -27.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds