Wall clock time and date at job start Mon Mar 30 2020 01:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46990 * 2 1 4 4 C 1.53000 * 109.47133 * 119.99552 * 2 1 3 5 5 H 1.09003 * 109.49299 * 60.05663 * 4 2 1 6 6 C 1.53249 * 109.51486 * 180.11940 * 4 2 1 7 7 N 1.47078 * 108.52085 * 173.80390 * 6 4 2 8 8 C 1.36936 * 120.87761 * 129.08916 * 7 6 4 9 9 H 1.08003 * 119.99918 * 206.35378 * 8 7 6 10 10 C 1.38812 * 120.00093 * 26.35777 * 8 7 6 11 11 N 1.31613 * 120.00062 * 17.10567 * 10 8 7 12 12 Si 1.86800 * 119.99878 * 197.11163 * 10 8 7 13 13 H 1.48495 * 109.47661 * 89.99597 * 12 10 8 14 14 H 1.48499 * 109.46917 * 209.99939 * 12 10 8 15 15 H 1.48507 * 109.46961 * 329.99339 * 12 10 8 16 16 C 1.47081 * 118.23818 * 308.81938 * 7 6 4 17 17 C 1.53239 * 108.52030 * 51.18533 * 16 7 6 18 18 N 1.46897 * 109.49572 * 300.00252 * 4 2 1 19 19 H 1.09003 * 109.47596 * 300.00118 * 1 2 3 20 20 H 1.08997 * 109.47224 * 59.99995 * 1 2 3 21 21 H 1.08999 * 109.47138 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47596 * 239.99881 * 2 1 3 23 23 H 1.08998 * 109.46783 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.46970 * 299.99599 * 3 2 1 25 25 H 1.08992 * 109.46843 * 59.99953 * 3 2 1 26 26 H 1.09004 * 109.62289 * 54.09820 * 6 4 2 27 27 H 1.08994 * 109.62630 * 293.51884 * 6 4 2 28 28 H 0.96997 * 120.00041 * 180.02562 * 11 10 8 29 29 H 1.09000 * 109.62520 * 170.89431 * 16 7 6 30 30 H 1.08996 * 109.62525 * 291.47220 * 16 7 6 31 31 H 1.08999 * 109.49805 * 66.13281 * 17 16 7 32 32 H 1.09002 * 109.49030 * 186.21074 * 17 16 7 33 33 H 1.00902 * 110.99942 * 301.05625 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6776 -1.7492 1.2492 6 6 3.5724 -0.7191 1.2518 7 7 4.0383 -1.2822 2.5282 8 6 4.9655 -2.2895 2.5552 9 1 4.9959 -2.9732 3.3908 10 6 5.8663 -2.4319 1.5088 11 7 6.0653 -1.4361 0.6716 12 14 6.7960 -4.0371 1.2887 13 1 6.0147 -4.9456 0.4115 14 1 8.1164 -3.7631 0.6669 15 1 6.9962 -4.6788 2.6130 16 6 3.4863 -0.7304 3.7749 17 6 1.9573 -0.7321 3.6730 18 7 1.5505 -0.0290 2.4490 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 3.9373 0.3027 1.1475 27 1 3.9407 -1.3285 0.4266 28 1 6.6945 -1.5357 -0.0598 29 1 3.7978 -1.3474 4.6177 30 1 3.8430 0.2902 3.9130 31 1 1.5961 -1.7600 3.6392 32 1 1.5345 -0.2260 4.5408 33 1 1.8598 0.9313 2.4639 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261022190.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:27 Heat of formation + Delta-G solvation = 12.939101 kcal Electronic energy + Delta-G solvation = -13574.721592 eV Core-core repulsion = 11442.507367 eV Total energy + Delta-G solvation = -2132.214225 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.41911 -34.80729 -33.04310 -30.42614 -28.99207 -26.76377 -25.72901 -23.16673 -22.44364 -20.05386 -18.76362 -16.84495 -15.20222 -14.72942 -14.27373 -13.77917 -13.62181 -13.41396 -12.86032 -12.66204 -12.26714 -11.89007 -11.57441 -11.23693 -10.93573 -10.84905 -10.64076 -10.35472 -10.28302 -10.12307 -9.99689 -9.74688 -9.60233 -8.49654 -7.85866 -6.57213 -5.76694 -3.21055 3.37053 3.43721 3.44917 4.47662 4.97491 5.23554 5.42198 5.49474 5.58820 5.64760 5.98046 6.05974 6.13140 6.18777 6.22770 6.23653 6.36445 6.48272 6.54413 6.61138 6.64767 6.78506 6.87726 6.92426 7.24745 7.58189 7.74393 7.83707 8.08509 8.42156 9.19218 9.82697 10.39102 11.28913 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040768 B = 0.011809 C = 0.010288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.652407 B = 2370.434624 C = 2721.075997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.149 4.149 4 C 0.066 3.934 5 H 0.069 0.931 6 C 0.144 3.856 7 N -0.596 5.596 8 C -0.252 4.252 9 H 0.066 0.934 10 C 0.001 3.999 11 N -0.904 5.904 12 Si 0.903 3.097 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.279 1.279 16 C 0.107 3.893 17 C 0.043 3.957 18 N -0.681 5.681 19 H 0.063 0.937 20 H 0.039 0.961 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.023 0.977 27 H 0.086 0.914 28 H 0.253 0.747 29 H 0.054 0.946 30 H 0.014 0.986 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 3.228 0.250 8.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.046 4.046 5 H 0.088 0.912 6 C 0.017 3.983 7 N -0.319 5.319 8 C -0.381 4.381 9 H 0.084 0.916 10 C -0.198 4.198 11 N -0.548 5.548 12 Si 0.733 3.267 13 H -0.214 1.214 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.020 4.020 17 C -0.088 4.088 18 N -0.311 5.311 19 H 0.082 0.918 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.672 2.916 0.110 9.149 hybrid contribution 1.613 -0.606 -0.133 1.728 sum -7.059 2.309 -0.023 7.427 Atomic orbital electron populations 1.21699 0.95556 1.00980 1.00895 1.21051 0.95424 0.96171 0.97807 1.21894 1.01833 0.96198 1.00668 1.22231 0.96798 0.96905 0.88637 0.91241 1.21529 0.88887 0.97667 0.90184 1.44113 1.47028 1.41338 0.99464 1.19209 1.08214 1.04085 1.06605 0.91643 1.25019 0.97235 0.97577 0.99922 1.70037 1.37152 1.29242 1.18389 0.86271 0.78945 0.83514 0.77950 1.21417 1.21745 1.20455 1.21650 0.93054 0.96505 0.90823 1.22398 0.95607 0.98910 0.91919 1.60854 1.62679 1.05475 1.02090 0.91826 0.94224 0.93588 0.91507 0.91847 0.93644 0.92878 0.95882 0.89537 0.93666 0.92708 0.96805 0.91640 0.92119 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.04 37.15 0.34 -1.60 16 2 C -0.09 -1.41 2.80 -90.62 -0.25 -1.67 16 3 C -0.15 -2.31 8.52 37.16 0.32 -1.99 16 4 C 0.07 1.28 2.37 -67.59 -0.16 1.12 16 5 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 6 C 0.14 3.45 4.47 -3.60 -0.02 3.44 16 7 N -0.60 -15.31 3.04 -172.01 -0.52 -15.83 16 8 C -0.25 -7.07 9.63 -15.06 -0.15 -7.22 16 9 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 10 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 11 N -0.90 -26.53 11.15 55.49 0.62 -25.91 16 12 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.11 2.31 6.67 -3.60 -0.02 2.29 16 17 C 0.04 0.78 6.70 -3.70 -0.02 0.75 16 18 N -0.68 -12.15 5.67 -106.45 -0.60 -12.75 16 19 H 0.06 0.93 7.61 -51.93 -0.39 0.54 16 20 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.06 1.11 6.31 -51.93 -0.33 0.78 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.78 6.64 -51.93 -0.34 0.44 16 26 H 0.02 0.58 6.15 -51.93 -0.32 0.26 16 27 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.33 5.71 6.92 -39.29 -0.27 5.43 16 LS Contribution 254.92 15.07 3.84 3.84 Total: -1.00 -29.12 254.92 -7.07 -36.20 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.32 Total: 2.40 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.06 Total: -4.94 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.51 Total: -54.50 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.12 -7.07 -36.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022190.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.137 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds