Wall clock time and date at job start Mon Mar 30 2020 01:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47018 * 2 1 4 4 C 1.53006 * 109.46890 * 119.99888 * 2 1 3 5 5 H 1.08998 * 109.62632 * 55.01070 * 4 2 1 6 6 C 1.53244 * 109.62639 * 294.62652 * 4 2 1 7 7 N 1.46894 * 109.33668 * 186.45716 * 6 4 2 8 8 C 1.46905 * 111.26649 * 63.10929 * 7 6 4 9 9 C 1.53237 * 109.33900 * 296.89397 * 8 7 6 10 10 N 1.47073 * 108.52445 * 53.82854 * 9 8 7 11 11 C 1.36939 * 120.88312 * 128.83925 * 10 9 8 12 12 H 1.07996 * 120.00493 * 146.58367 * 11 10 9 13 13 C 1.38813 * 119.99320 * 326.58109 * 11 10 9 14 14 N 1.31608 * 120.00515 * 348.27750 * 13 11 10 15 15 Si 1.86808 * 119.99496 * 168.27706 * 13 11 10 16 16 H 1.48501 * 109.47164 * 59.99996 * 15 13 11 17 17 H 1.48496 * 109.47148 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46839 * 300.00092 * 15 13 11 19 19 H 1.09005 * 109.46672 * 60.00264 * 1 2 3 20 20 H 1.08995 * 109.47061 * 300.00490 * 1 2 3 21 21 H 1.08999 * 109.47378 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47061 * 239.99510 * 2 1 3 23 23 H 1.08996 * 109.47372 * 52.77654 * 3 2 1 24 24 H 1.09002 * 109.46837 * 172.77990 * 3 2 1 25 25 H 1.08998 * 109.46929 * 292.77488 * 3 2 1 26 26 H 1.08992 * 109.49513 * 306.42206 * 6 4 2 27 27 H 1.09001 * 109.49027 * 66.47640 * 6 4 2 28 28 H 1.00902 * 111.00001 * 187.25299 * 7 6 4 29 29 H 1.08999 * 109.49443 * 56.85390 * 8 7 6 30 30 H 1.09000 * 109.49472 * 176.90358 * 8 7 6 31 31 H 1.08998 * 109.62883 * 173.54211 * 9 8 7 32 32 H 1.09004 * 109.62785 * 293.91908 * 9 8 7 33 33 H 0.97007 * 120.00326 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6070 -1.7204 1.2976 6 6 1.6445 0.0722 2.4993 7 7 2.2667 -0.5397 3.6809 8 6 3.7324 -0.4762 3.6044 9 6 4.2134 -1.2920 2.3998 10 7 3.5069 -0.8160 1.2009 11 6 4.1966 -0.4706 0.0693 12 1 3.7594 -0.6424 -0.9031 13 6 5.4577 0.1003 0.1724 14 7 5.8960 0.5216 1.3396 15 14 6.5326 0.2705 -1.3459 16 1 5.8383 1.1135 -2.3521 17 1 7.8213 0.9062 -0.9713 18 1 6.7931 -1.0736 -1.9212 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.5750 1.9922 0.8183 24 1 3.1223 1.4451 0.1292 25 1 1.7860 1.9176 -0.9475 26 1 1.9872 1.1021 2.3999 27 1 0.5603 0.0588 2.6106 28 1 1.9300 -0.1106 4.5298 29 1 4.0460 0.5613 3.4897 30 1 4.1624 -0.8872 4.5177 31 1 5.2871 -1.1557 2.2704 32 1 3.9954 -2.3477 2.5618 33 1 6.7774 0.9202 1.4117 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261052365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:35 Heat of formation + Delta-G solvation = 19.869677 kcal Electronic energy + Delta-G solvation = -13911.040477 eV Core-core repulsion = 11779.126784 eV Total energy + Delta-G solvation = -2131.913693 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.20542 -34.39923 -33.39713 -30.42214 -28.59619 -26.59574 -25.63864 -23.06401 -22.39677 -19.75830 -18.33041 -16.33241 -15.62531 -14.65622 -14.27821 -13.76250 -13.38158 -13.09123 -12.98700 -12.35112 -12.26057 -11.75279 -11.15155 -11.11619 -10.84775 -10.82103 -10.42299 -10.26718 -10.11003 -9.98683 -9.66220 -9.51718 -9.18696 -8.36955 -7.65828 -6.42928 -5.71601 -3.23882 3.38875 3.44384 3.45975 4.50500 5.07830 5.37097 5.41465 5.71034 5.77614 6.02597 6.14338 6.16082 6.31790 6.38271 6.47281 6.51964 6.54963 6.64559 6.73127 6.83016 6.90804 7.09404 7.19768 7.44164 7.60337 7.62002 7.81400 8.00584 8.17543 8.55426 9.26454 9.88184 10.50298 11.30972 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032731 B = 0.016605 C = 0.012281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.264170 B = 1685.784646 C = 2279.382740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.147 4.147 4 C 0.181 3.819 5 H 0.029 0.971 6 C 0.046 3.954 7 N -0.694 5.694 8 C 0.051 3.949 9 C 0.158 3.842 10 N -0.587 5.587 11 C -0.235 4.235 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.284 1.284 19 H 0.045 0.955 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.099 0.901 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.319 0.681 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.001 0.999 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 0.160 0.939 6.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.204 4.204 4 C 0.075 3.925 5 H 0.046 0.954 6 C -0.085 4.085 7 N -0.324 5.324 8 C -0.079 4.079 9 C 0.032 3.968 10 N -0.311 5.311 11 C -0.365 4.365 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.546 5.546 15 Si 0.729 3.271 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.211 1.211 19 H 0.064 0.936 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.053 0.947 24 H 0.118 0.882 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.019 0.981 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.342 -0.398 0.699 6.393 hybrid contribution 0.706 1.189 -0.451 1.454 sum -5.636 0.790 0.248 5.697 Atomic orbital electron populations 1.21895 0.96962 1.00713 1.00715 1.21078 0.92959 0.97425 0.98927 1.21990 1.05522 0.94505 0.98338 1.20618 0.86082 0.94780 0.91069 0.95369 1.22567 0.96553 0.96997 0.92387 1.60403 1.08027 1.60204 1.03768 1.22355 0.85910 1.00517 0.99106 1.21049 1.00040 0.91714 0.83979 1.44134 0.99431 1.75394 1.12093 1.19005 0.98784 1.32713 0.86037 0.91780 1.25139 0.99783 0.98369 0.96466 1.69876 1.18973 1.43036 1.22672 0.86424 0.79954 0.77861 0.82876 1.20905 1.21733 1.21083 0.93556 0.93240 0.93404 0.91031 0.94722 0.88231 0.95169 0.94947 0.92943 0.86550 0.94276 0.93271 0.87820 0.98093 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.96 37.16 0.33 -1.96 16 2 C -0.08 -1.66 2.24 -90.62 -0.20 -1.86 16 3 C -0.15 -2.98 8.18 37.15 0.30 -2.68 16 4 C 0.18 3.94 2.82 -67.49 -0.19 3.75 16 5 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 6 C 0.05 0.92 5.29 -3.70 -0.02 0.90 16 7 N -0.69 -13.79 6.82 -113.51 -0.77 -14.56 16 8 C 0.05 1.12 6.70 -3.70 -0.02 1.10 16 9 C 0.16 3.90 5.91 -3.61 -0.02 3.88 16 10 N -0.59 -14.73 2.92 -164.48 -0.48 -15.21 16 11 C -0.24 -6.23 6.31 -15.06 -0.10 -6.32 16 12 H 0.06 1.69 6.35 -52.49 -0.33 1.35 16 13 C 0.00 0.02 4.98 -17.43 -0.09 -0.07 16 14 N -0.90 -25.10 10.96 55.49 0.61 -24.49 16 15 Si 0.90 21.39 29.57 -169.99 -5.03 16.36 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.05 0.74 6.74 -51.93 -0.35 0.39 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 1.49 6.65 -51.93 -0.35 1.15 16 23 H 0.03 0.66 6.65 -51.93 -0.35 0.32 16 24 H 0.10 2.44 5.55 -51.93 -0.29 2.15 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.03 0.70 6.16 -51.93 -0.32 0.38 16 27 H 0.05 0.93 6.92 -51.93 -0.36 0.57 16 28 H 0.32 5.45 8.90 -39.29 -0.35 5.10 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 2.81 5.50 -51.93 -0.29 2.52 16 32 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 247.71 15.07 3.73 3.73 Total: -1.00 -27.57 247.71 -7.01 -34.59 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.07 Total: 2.83 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 0.00 Total: -3.26 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.65 Total: -54.26 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.57 -7.01 -34.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.459 kcal (2) G-P(sol) polarization free energy of solvation -27.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds