Wall clock time and date at job start Mon Mar 30 2020 02:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47191 * 2 1 4 4 C 1.50700 * 109.46883 * 240.00909 * 2 1 3 5 5 H 1.08000 * 119.99802 * 240.15500 * 4 2 1 6 6 C 1.37874 * 120.00318 * 60.15704 * 4 2 1 7 7 N 1.31511 * 120.00210 * 202.91723 * 6 4 2 8 8 Si 1.86803 * 120.00136 * 22.91209 * 6 4 2 9 9 H 1.48508 * 109.46972 * 91.69147 * 8 6 4 10 10 H 1.48490 * 109.47505 * 211.69742 * 8 6 4 11 11 H 1.48502 * 109.46916 * 331.70054 * 8 6 4 12 12 N 1.46898 * 109.47565 * 120.00539 * 2 1 3 13 13 C 1.48532 * 111.00062 * 302.97443 * 12 2 1 14 14 C 1.54932 * 103.22826 * 159.72045 * 13 12 2 15 15 H 1.09002 * 110.72397 * 80.94211 * 14 13 12 16 16 C 1.52992 * 110.72640 * 204.04690 * 14 13 12 17 17 C 1.54593 * 102.92114 * 322.58549 * 14 13 12 18 18 H 1.08998 * 110.31208 * 263.04204 * 17 14 13 19 19 N 1.46905 * 110.31348 * 140.97487 * 17 14 13 20 20 C 1.47904 * 110.99606 * 60.37026 * 12 2 1 21 21 H 1.08997 * 109.46531 * 186.06529 * 1 2 3 22 22 H 1.09000 * 109.47595 * 66.06501 * 1 2 3 23 23 H 1.08996 * 109.46952 * 306.05871 * 1 2 3 24 24 H 0.97008 * 120.00190 * 179.97438 * 7 6 4 25 25 H 1.09005 * 110.66237 * 278.15436 * 13 12 2 26 26 H 1.08991 * 110.66741 * 41.11448 * 13 12 2 27 27 H 1.09012 * 109.47038 * 58.54598 * 16 14 13 28 28 H 1.08993 * 109.47388 * 178.54222 * 16 14 13 29 29 H 1.08997 * 109.47400 * 298.54808 * 16 14 13 30 30 H 1.00900 * 111.00070 * 180.02562 * 19 17 14 31 31 H 1.00907 * 110.99333 * 303.95280 * 19 17 14 32 32 H 1.08996 * 109.91830 * 333.50632 * 20 12 2 33 33 H 1.08998 * 109.91803 * 94.80575 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6511 -1.5898 -1.1316 6 6 1.7019 -0.2371 -2.4828 7 7 1.7305 -1.0454 -3.5198 8 14 1.2134 1.5520 -2.7064 9 1 2.4181 2.3570 -3.0321 10 1 0.2302 1.6620 -3.8138 11 1 0.6038 2.0593 -1.4509 12 7 2.0198 -0.6926 1.1993 13 6 1.4857 -0.0620 2.4336 14 6 1.6453 -1.1760 3.4984 15 1 2.6679 -1.2064 3.8746 16 6 0.6541 -0.9738 4.6462 17 6 1.3156 -2.4617 2.7058 18 1 0.2752 -2.7464 2.8625 19 7 2.2091 -3.5546 3.1122 20 6 1.5528 -2.0957 1.2289 21 1 -0.3632 -1.0219 0.1086 22 1 -0.3634 0.4169 -0.9393 23 1 -0.3633 0.6049 0.8308 24 1 1.4976 -0.7127 -4.4007 25 1 2.0743 0.8150 2.7031 26 1 0.4366 0.2047 2.3063 27 1 -0.3626 -0.9766 4.2530 28 1 0.7661 -1.7815 5.3694 29 1 0.8525 -0.0194 5.1338 30 1 2.0031 -4.3994 2.6005 31 1 3.1767 -3.2911 3.0001 32 1 0.6223 -2.1892 0.6690 33 1 2.3135 -2.7492 0.8019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300049546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:58 Heat of formation + Delta-G solvation = 7.809488 kcal Electronic energy + Delta-G solvation = -13423.205821 eV Core-core repulsion = 11290.769159 eV Total energy + Delta-G solvation = -2132.436662 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.05954 -34.87296 -32.43205 -31.74392 -29.32548 -26.63661 -25.50016 -24.52970 -21.61104 -19.84629 -19.06881 -16.52728 -15.66679 -15.26545 -15.05547 -14.19850 -13.60002 -13.28864 -12.91093 -12.79246 -12.35032 -12.12914 -11.92472 -11.46667 -11.13638 -11.03435 -10.81348 -10.51522 -10.32595 -10.18178 -10.07418 -9.58812 -9.28188 -8.37363 -8.28912 -7.39735 -6.15674 -4.03309 3.26716 3.36240 3.39576 4.40831 4.80642 4.83614 5.01310 5.14865 5.28326 5.43006 5.70469 5.81558 5.85264 5.95780 6.07445 6.23764 6.28351 6.34587 6.37082 6.44510 6.57766 6.64068 6.69828 6.97932 7.22181 7.41829 7.56102 7.68837 7.91607 8.04977 8.61926 8.98594 9.54070 10.97161 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052748 B = 0.010696 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.694929 B = 2617.095774 C = 2953.428607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.176 3.824 3 H 0.035 0.965 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.079 3.921 7 N -0.884 5.884 8 Si 0.860 3.140 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.259 1.259 12 N -0.500 5.500 13 C 0.026 3.974 14 C -0.087 4.087 15 H 0.080 0.920 16 C -0.137 4.137 17 C 0.079 3.921 18 H 0.077 0.923 19 N -0.841 5.841 20 C 0.015 3.985 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.026 0.974 24 H 0.263 0.737 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.337 0.663 31 H 0.342 0.658 32 H 0.055 0.945 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -0.052 11.749 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 H 0.053 0.947 4 C -0.553 4.553 5 H 0.094 0.906 6 C -0.124 4.124 7 N -0.521 5.521 8 Si 0.687 3.313 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.184 1.184 12 N -0.223 5.223 13 C -0.103 4.103 14 C -0.106 4.106 15 H 0.098 0.902 16 C -0.195 4.195 17 C -0.033 4.033 18 H 0.095 0.905 19 N -0.369 5.369 20 C -0.115 4.115 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.145 0.035 12.240 12.426 hybrid contribution -0.860 1.003 -1.503 2.001 sum -3.005 1.037 10.736 11.197 Atomic orbital electron populations 1.22780 1.01274 1.00117 0.99543 1.19766 0.89221 0.95119 0.89163 0.94727 1.20788 1.32914 1.13593 0.88008 0.90567 1.24845 0.94479 0.97120 0.95982 1.70053 1.47511 1.34312 1.00245 0.87214 0.78521 0.87430 0.78125 1.20536 1.21471 1.18377 1.64917 1.54547 1.01237 1.01575 1.23387 0.98672 0.97112 0.91129 1.22057 0.99894 0.93966 0.94695 0.90174 1.21711 0.98637 1.01146 0.97975 1.22489 0.96586 0.91083 0.93141 0.90456 1.59027 1.08122 1.06203 1.63593 1.23596 1.00269 0.92347 0.95307 0.93079 0.93068 0.95474 0.92693 0.91139 0.93610 0.93104 0.92470 0.92968 0.85065 0.84549 0.92658 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 7.79 37.16 0.29 -3.65 16 2 C 0.18 4.20 2.02 -68.87 -0.14 4.06 16 3 H 0.03 0.86 6.86 -51.93 -0.36 0.51 16 4 C -0.52 -14.41 8.49 -34.44 -0.29 -14.71 16 5 H 0.08 2.33 7.48 -52.49 -0.39 1.94 16 6 C 0.08 2.25 5.19 -17.82 -0.09 2.16 16 7 N -0.88 -26.67 13.96 55.43 0.77 -25.89 16 8 Si 0.86 21.21 25.85 -169.99 -4.39 16.82 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.08 5.79 56.52 0.33 -5.75 16 12 N -0.50 -10.45 5.32 -223.89 -1.19 -11.64 16 13 C 0.03 0.44 5.82 -1.90 -0.01 0.43 16 14 C -0.09 -1.28 3.34 -88.77 -0.30 -1.58 16 15 H 0.08 1.20 7.95 -51.93 -0.41 0.78 16 16 C -0.14 -1.70 9.17 37.15 0.34 -1.36 16 17 C 0.08 1.22 3.71 -66.35 -0.25 0.98 16 18 H 0.08 1.17 7.83 -51.93 -0.41 0.76 16 19 N -0.84 -11.47 9.17 -3.51 -0.03 -11.50 16 20 C 0.01 0.29 5.23 -2.75 -0.01 0.27 16 21 H 0.05 1.11 5.82 -51.93 -0.30 0.81 16 22 H 0.05 1.18 5.11 -51.93 -0.27 0.92 16 23 H 0.03 0.52 6.33 -51.93 -0.33 0.20 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.79 5.59 -51.93 -0.29 0.50 16 27 H 0.05 0.62 8.11 -51.92 -0.42 0.20 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.34 4.20 9.08 -39.29 -0.36 3.85 16 31 H 0.34 4.62 8.89 -39.29 -0.35 4.28 16 32 H 0.06 1.16 5.44 -51.93 -0.28 0.88 16 33 H 0.07 1.41 7.68 -51.93 -0.40 1.01 16 LS Contribution 249.95 15.07 3.77 3.77 Total: -1.00 -29.28 249.95 -6.58 -35.86 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.04 Total: 5.99 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.46 Total: -13.40 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.45 Total: -49.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.39 Total: 16.82 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.28 -6.58 -35.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300049546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.668 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds