Wall clock time and date at job start Mon Mar 30 2020 02:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47191 * 2 1 4 4 C 1.50700 * 109.46883 * 240.00909 * 2 1 3 5 5 H 1.08000 * 119.99802 * 240.15500 * 4 2 1 6 6 C 1.37874 * 120.00318 * 60.15704 * 4 2 1 7 7 N 1.31511 * 120.00210 * 202.91723 * 6 4 2 8 8 Si 1.86803 * 120.00136 * 22.91209 * 6 4 2 9 9 H 1.48508 * 109.46972 * 91.69147 * 8 6 4 10 10 H 1.48490 * 109.47505 * 211.69742 * 8 6 4 11 11 H 1.48502 * 109.46916 * 331.70054 * 8 6 4 12 12 N 1.46898 * 109.47565 * 120.00539 * 2 1 3 13 13 C 1.48532 * 111.00062 * 302.97443 * 12 2 1 14 14 C 1.54932 * 103.22826 * 159.72045 * 13 12 2 15 15 H 1.09002 * 110.72397 * 80.94211 * 14 13 12 16 16 C 1.52992 * 110.72640 * 204.04690 * 14 13 12 17 17 C 1.54593 * 102.92114 * 322.58549 * 14 13 12 18 18 H 1.08998 * 110.31208 * 263.04204 * 17 14 13 19 19 N 1.46905 * 110.31348 * 140.97487 * 17 14 13 20 20 C 1.47904 * 110.99606 * 60.37026 * 12 2 1 21 21 H 1.08997 * 109.46531 * 186.06529 * 1 2 3 22 22 H 1.09000 * 109.47595 * 66.06501 * 1 2 3 23 23 H 1.08996 * 109.46952 * 306.05871 * 1 2 3 24 24 H 0.97008 * 120.00190 * 179.97438 * 7 6 4 25 25 H 1.09005 * 110.66237 * 278.15436 * 13 12 2 26 26 H 1.08991 * 110.66741 * 41.11448 * 13 12 2 27 27 H 1.09012 * 109.47038 * 58.54598 * 16 14 13 28 28 H 1.08993 * 109.47388 * 178.54222 * 16 14 13 29 29 H 1.08997 * 109.47400 * 298.54808 * 16 14 13 30 30 H 1.00900 * 111.00070 * 180.02562 * 19 17 14 31 31 H 1.00907 * 110.99333 * 303.95280 * 19 17 14 32 32 H 1.08996 * 109.91830 * 333.50632 * 20 12 2 33 33 H 1.08998 * 109.91803 * 94.80575 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6511 -1.5898 -1.1316 6 6 1.7019 -0.2371 -2.4828 7 7 1.7305 -1.0454 -3.5198 8 14 1.2134 1.5520 -2.7064 9 1 2.4181 2.3570 -3.0321 10 1 0.2302 1.6620 -3.8138 11 1 0.6038 2.0593 -1.4509 12 7 2.0198 -0.6926 1.1993 13 6 1.4857 -0.0620 2.4336 14 6 1.6453 -1.1760 3.4984 15 1 2.6679 -1.2064 3.8746 16 6 0.6541 -0.9738 4.6462 17 6 1.3156 -2.4617 2.7058 18 1 0.2752 -2.7464 2.8625 19 7 2.2091 -3.5546 3.1122 20 6 1.5528 -2.0957 1.2289 21 1 -0.3632 -1.0219 0.1086 22 1 -0.3634 0.4169 -0.9393 23 1 -0.3633 0.6049 0.8308 24 1 1.4976 -0.7127 -4.4007 25 1 2.0743 0.8150 2.7031 26 1 0.4366 0.2047 2.3063 27 1 -0.3626 -0.9766 4.2530 28 1 0.7661 -1.7815 5.3694 29 1 0.8525 -0.0194 5.1338 30 1 2.0031 -4.3994 2.6005 31 1 3.1767 -3.2911 3.0001 32 1 0.6223 -2.1892 0.6690 33 1 2.3135 -2.7492 0.8019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300049546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:58 Heat of formation + Delta-G solvation = -15.660839 kcal Electronic energy + Delta-G solvation = -13424.223571 eV Core-core repulsion = 11290.769159 eV Total energy + Delta-G solvation = -2133.454412 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.53223 -36.49566 -34.30514 -33.08481 -30.98573 -28.07418 -27.32851 -26.03365 -23.16079 -21.13673 -20.82554 -18.55707 -17.20217 -16.74844 -16.42566 -15.95913 -15.14224 -14.94067 -14.42979 -14.35006 -13.95962 -13.53618 -13.33032 -13.08151 -12.77913 -12.63030 -12.41356 -12.16310 -11.90906 -11.57161 -11.53110 -11.44367 -11.23257 -10.46417 -9.60229 -9.03577 -8.35743 -6.27795 1.31025 1.36650 1.45069 2.33009 2.97215 3.34382 3.60365 3.76060 3.95916 4.22188 4.33065 4.46006 4.57124 4.62576 4.71996 4.73512 4.76630 4.87234 5.03309 5.05557 5.16245 5.20130 5.34875 5.46053 5.50329 5.60757 6.00951 6.22732 6.27612 6.57551 6.66220 6.73827 7.33117 8.80879 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052748 B = 0.010696 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.694929 B = 2617.095774 C = 2953.428607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.178 3.822 3 H 0.031 0.969 4 C -0.520 4.520 5 H 0.031 0.969 6 C 0.024 3.976 7 N -0.933 5.933 8 Si 0.927 3.073 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.236 1.236 12 N -0.518 5.518 13 C 0.024 3.976 14 C -0.078 4.078 15 H 0.080 0.920 16 C -0.130 4.130 17 C 0.091 3.909 18 H 0.087 0.913 19 N -0.833 5.833 20 C 0.019 3.981 21 H 0.047 0.953 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.266 0.734 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.344 0.656 31 H 0.343 0.657 32 H 0.034 0.966 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 1.330 13.849 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.069 3.931 3 H 0.049 0.951 4 C -0.558 4.558 5 H 0.050 0.950 6 C -0.175 4.175 7 N -0.571 5.571 8 Si 0.751 3.249 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.159 1.159 12 N -0.242 5.242 13 C -0.103 4.103 14 C -0.098 4.098 15 H 0.099 0.901 16 C -0.188 4.188 17 C -0.022 4.022 18 H 0.105 0.895 19 N -0.361 5.361 20 C -0.112 4.112 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.052 0.948 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.099 1.412 14.372 14.770 hybrid contribution -0.488 0.463 -2.145 2.248 sum -3.587 1.875 12.227 12.879 Atomic orbital electron populations 1.22644 0.99631 1.00575 1.00200 1.19592 0.90326 0.94427 0.88747 0.95072 1.20994 1.32093 1.12451 0.90238 0.95047 1.25687 0.94819 1.01485 0.95538 1.70174 1.49540 1.36511 1.00924 0.86141 0.78366 0.81391 0.79024 1.20268 1.21110 1.15871 1.64788 1.55382 1.01992 1.01998 1.23500 0.98841 0.98083 0.89923 1.22030 1.00854 0.92178 0.94693 0.90120 1.21664 0.97824 1.02346 0.96974 1.22409 0.97438 0.92094 0.90296 0.89522 1.59045 1.08014 1.05950 1.63095 1.23575 0.98199 0.91423 0.97960 0.93410 0.94176 0.92341 0.92511 0.90262 0.93108 0.92794 0.91640 0.91454 0.84307 0.84398 0.94821 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.29 7.79 71.98 0.56 -6.73 16 2 C 0.18 8.40 2.02 44.17 0.09 8.49 16 3 H 0.03 1.50 6.86 -2.38 -0.02 1.48 16 4 C -0.52 -29.86 8.49 25.60 0.22 -29.64 16 5 H 0.03 2.03 7.48 -2.91 -0.02 2.01 16 6 C 0.02 1.38 5.19 84.65 0.44 1.82 16 7 N -0.93 -57.89 13.96 21.45 0.30 -57.59 16 8 Si 0.93 43.65 25.85 68.60 1.77 45.43 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.24 -10.12 5.79 99.48 0.58 -9.54 16 12 N -0.52 -21.37 5.32 -862.24 -4.59 -25.95 16 13 C 0.02 0.78 5.82 86.65 0.50 1.29 16 14 C -0.08 -2.09 3.34 -9.59 -0.03 -2.12 16 15 H 0.08 2.18 7.95 -2.39 -0.02 2.16 16 16 C -0.13 -2.72 9.17 71.98 0.66 -2.06 16 17 C 0.09 2.63 3.71 45.79 0.17 2.80 16 18 H 0.09 2.41 7.83 -2.39 -0.02 2.39 16 19 N -0.83 -21.38 9.17 -165.03 -1.51 -22.89 16 20 C 0.02 0.73 5.23 86.45 0.45 1.18 16 21 H 0.05 2.04 5.82 -2.39 -0.01 2.02 16 22 H 0.04 1.76 5.11 -2.39 -0.01 1.75 16 23 H 0.06 2.10 6.33 -2.39 -0.02 2.08 16 24 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 25 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.05 1.58 5.59 -2.39 -0.01 1.57 16 27 H 0.05 1.11 8.11 -2.38 -0.02 1.09 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.34 8.18 9.08 -89.69 -0.81 7.37 16 31 H 0.34 8.86 8.89 -89.69 -0.80 8.06 16 32 H 0.03 1.43 5.44 -2.39 -0.01 1.42 16 33 H 0.04 1.92 7.68 -2.39 -0.02 1.90 16 Total: -1.00 -63.79 249.95 -1.60 -65.38 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.63 Total: 20.61 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 3.06 Total: -24.99 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -5.80 Total: -106.44 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.77 Total: 45.43 kcal Total: -63.79 -1.60 -65.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300049546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.724 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds