Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47532 * 2 1 4 4 C 1.50703 * 109.47048 * 239.99555 * 2 1 3 5 5 H 1.08002 * 120.00008 * 239.99887 * 4 2 1 6 6 C 1.37880 * 119.99849 * 60.00505 * 4 2 1 7 7 N 1.31517 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99782 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47392 * 59.99953 * 8 6 4 10 10 H 1.48507 * 109.47030 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47309 * 299.99658 * 8 6 4 12 12 N 1.46907 * 109.47152 * 119.99735 * 2 1 3 13 13 C 1.48554 * 110.99717 * 48.05358 * 12 2 1 14 14 C 1.54377 * 104.59491 * 200.95871 * 13 12 2 15 15 C 1.54267 * 105.05858 * 23.85247 * 14 13 12 16 16 H 1.08994 * 110.32077 * 241.10052 * 15 14 13 17 17 N 1.46901 * 110.32051 * 118.89665 * 15 14 13 18 18 C 1.48554 * 110.99777 * 292.63273 * 12 2 1 19 19 H 1.09000 * 110.41146 * 40.26634 * 18 12 2 20 20 C 1.52994 * 110.51638 * 277.86795 * 18 12 2 21 21 H 1.08998 * 109.47161 * 171.79307 * 1 2 3 22 22 H 1.09001 * 109.47152 * 291.79396 * 1 2 3 23 23 H 1.09003 * 109.46906 * 51.79305 * 1 2 3 24 24 H 0.96994 * 120.00667 * 180.02562 * 7 6 4 25 25 H 1.09003 * 110.41366 * 319.73961 * 13 12 2 26 26 H 1.09000 * 110.41234 * 82.06331 * 13 12 2 27 27 H 1.08995 * 110.32534 * 264.95885 * 14 13 12 28 28 H 1.09004 * 110.32672 * 142.75005 * 14 13 12 29 29 H 1.00896 * 111.00362 * 64.35979 * 17 15 14 30 30 H 1.00899 * 111.00019 * 188.31781 * 17 15 14 31 31 H 1.09004 * 109.47047 * 303.31551 * 20 18 12 32 32 H 1.08994 * 109.47020 * 63.31876 * 20 18 12 33 33 H 1.09006 * 109.47130 * 183.31819 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0081 10 1 1.8269 -0.4201 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 7 2.0197 -0.6925 1.1995 13 6 1.3231 -1.9912 1.3861 14 6 1.5151 -2.3245 2.8811 15 6 1.7591 -0.9643 3.5668 16 1 2.7418 -0.9488 4.0381 17 7 0.7109 -0.6989 4.5612 18 6 1.6939 0.0763 2.4282 19 1 0.6921 0.4998 2.3573 20 6 2.7250 1.1832 2.6573 21 1 -0.3633 -1.0171 -0.1467 22 1 -0.3633 0.3815 0.9542 23 1 -0.3633 0.6356 -0.8076 24 1 0.7082 1.1608 -3.4844 25 1 0.2632 -1.8913 1.1519 26 1 1.7785 -2.7600 0.7619 27 1 2.3781 -2.9765 3.0159 28 1 0.6176 -2.7952 3.2825 29 1 0.7442 -1.3737 5.3106 30 1 0.7813 0.2420 4.9185 31 1 3.7220 0.7457 2.7101 32 1 2.6835 1.8946 1.8327 33 1 2.5040 1.6977 3.5926 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306252886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = 4.918588 kcal Electronic energy + Delta-G solvation = -13470.618073 eV Core-core repulsion = 11338.056053 eV Total energy + Delta-G solvation = -2132.562021 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.83043 -34.57231 -32.35931 -30.79959 -29.85200 -26.52547 -25.17730 -24.14607 -21.82873 -19.61113 -18.64158 -16.11541 -15.64941 -15.12276 -14.85020 -14.09073 -13.65266 -13.44227 -13.05732 -12.29825 -11.87399 -11.71994 -11.45756 -11.05355 -10.89883 -10.75123 -10.57375 -10.35764 -10.23886 -10.10112 -9.85969 -9.65579 -8.79867 -8.49627 -8.33290 -7.19360 -5.95571 -3.98277 3.36098 3.39892 3.43210 4.44957 4.66706 5.09988 5.26391 5.31011 5.37166 5.61007 5.86596 6.02432 6.06241 6.13307 6.29066 6.43821 6.57624 6.64708 6.73177 6.78962 6.89873 6.90844 7.18482 7.29452 7.52324 7.57905 7.76205 7.90788 8.14277 8.41239 8.63278 9.07453 9.66198 11.12241 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054836 B = 0.010071 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.492753 B = 2779.463602 C = 2922.322787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.201 3.799 3 H 0.039 0.961 4 C -0.496 4.496 5 H 0.060 0.940 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.498 5.498 13 C 0.041 3.959 14 C -0.120 4.120 15 C 0.088 3.912 16 H 0.039 0.961 17 N -0.843 5.843 18 C 0.055 3.945 19 H 0.060 0.940 20 C -0.133 4.133 21 H 0.035 0.965 22 H 0.011 0.989 23 H 0.081 0.919 24 H 0.260 0.740 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.335 0.665 30 H 0.337 0.663 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -2.343 10.644 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.094 3.906 3 H 0.056 0.944 4 C -0.535 4.535 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.222 5.222 13 C -0.088 4.088 14 C -0.159 4.159 15 C -0.023 4.023 16 H 0.056 0.944 17 N -0.373 5.373 18 C -0.055 4.055 19 H 0.078 0.922 20 C -0.191 4.191 21 H 0.054 0.946 22 H 0.030 0.970 23 H 0.100 0.900 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.612 -2.416 9.799 10.112 hybrid contribution 0.158 -0.138 -0.184 0.279 sum 0.769 -2.554 9.615 9.978 Atomic orbital electron populations 1.22375 1.00735 1.00565 0.99020 1.19395 0.89894 0.94676 0.86609 0.94363 1.21036 1.30504 1.12354 0.89618 0.92174 1.24931 0.95300 0.95164 0.98954 1.69899 1.37132 1.23108 1.23390 0.86589 0.79171 0.79609 0.82165 1.20417 1.21448 1.20305 1.65669 1.52675 1.02281 1.01570 1.22936 0.98330 0.93977 0.93518 1.22405 1.00816 0.95843 0.96799 1.22151 0.91604 0.96094 0.92478 0.94351 1.58843 1.52112 1.07527 1.18856 1.22628 0.98014 0.93813 0.91013 0.92236 1.21692 0.99218 0.97995 1.00195 0.94630 0.97021 0.89999 0.93053 0.93156 0.90963 0.92140 0.91514 0.85312 0.85079 0.92494 0.92250 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 7.79 37.16 0.29 -3.90 16 2 C 0.20 5.17 2.28 -68.86 -0.16 5.02 16 3 H 0.04 1.08 7.27 -51.93 -0.38 0.70 16 4 C -0.50 -13.90 8.33 -34.44 -0.29 -14.19 16 5 H 0.06 1.70 7.78 -52.49 -0.41 1.29 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.94 11.42 55.43 0.63 -25.31 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.50 -11.01 5.02 -215.62 -1.08 -12.09 16 13 C 0.04 0.83 5.76 -2.19 -0.01 0.81 16 14 C -0.12 -1.96 6.79 -25.35 -0.17 -2.13 16 15 C 0.09 1.39 3.74 -66.33 -0.25 1.14 16 16 H 0.04 0.58 7.86 -51.93 -0.41 0.17 16 17 N -0.84 -11.14 9.14 -3.49 -0.03 -11.17 16 18 C 0.05 1.03 2.41 -66.08 -0.16 0.87 16 19 H 0.06 1.22 5.90 -51.93 -0.31 0.91 16 20 C -0.13 -2.26 9.32 37.15 0.35 -1.92 16 21 H 0.03 0.88 6.42 -51.93 -0.33 0.54 16 22 H 0.01 0.26 6.11 -51.93 -0.32 -0.06 16 23 H 0.08 2.23 6.34 -51.93 -0.33 1.90 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.05 1.08 5.39 -51.93 -0.28 0.80 16 26 H 0.07 1.50 8.11 -51.93 -0.42 1.08 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.02 7.95 -51.93 -0.41 0.61 16 29 H 0.33 3.63 9.08 -39.29 -0.36 3.28 16 30 H 0.34 3.97 9.02 -39.29 -0.35 3.62 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.10 7.38 -51.93 -0.38 0.72 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 255.50 15.07 3.85 3.85 Total: -1.00 -29.03 255.50 -7.24 -36.27 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.09 Total: 4.51 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -0.50 Total: -12.79 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.48 Total: -48.57 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.03 -7.24 -36.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306252886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.185 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds