Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47532 * 2 1 4 4 C 1.50703 * 109.47048 * 239.99555 * 2 1 3 5 5 H 1.08002 * 120.00008 * 239.99887 * 4 2 1 6 6 C 1.37880 * 119.99849 * 60.00505 * 4 2 1 7 7 N 1.31517 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99782 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47392 * 59.99953 * 8 6 4 10 10 H 1.48507 * 109.47030 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47309 * 299.99658 * 8 6 4 12 12 N 1.46907 * 109.47152 * 119.99735 * 2 1 3 13 13 C 1.48554 * 110.99717 * 48.05358 * 12 2 1 14 14 C 1.54377 * 104.59491 * 200.95871 * 13 12 2 15 15 C 1.54267 * 105.05858 * 23.85247 * 14 13 12 16 16 H 1.08994 * 110.32077 * 241.10052 * 15 14 13 17 17 N 1.46901 * 110.32051 * 118.89665 * 15 14 13 18 18 C 1.48554 * 110.99777 * 292.63273 * 12 2 1 19 19 H 1.09000 * 110.41146 * 40.26634 * 18 12 2 20 20 C 1.52994 * 110.51638 * 277.86795 * 18 12 2 21 21 H 1.08998 * 109.47161 * 171.79307 * 1 2 3 22 22 H 1.09001 * 109.47152 * 291.79396 * 1 2 3 23 23 H 1.09003 * 109.46906 * 51.79305 * 1 2 3 24 24 H 0.96994 * 120.00667 * 180.02562 * 7 6 4 25 25 H 1.09003 * 110.41366 * 319.73961 * 13 12 2 26 26 H 1.09000 * 110.41234 * 82.06331 * 13 12 2 27 27 H 1.08995 * 110.32534 * 264.95885 * 14 13 12 28 28 H 1.09004 * 110.32672 * 142.75005 * 14 13 12 29 29 H 1.00896 * 111.00362 * 64.35979 * 17 15 14 30 30 H 1.00899 * 111.00019 * 188.31781 * 17 15 14 31 31 H 1.09004 * 109.47047 * 303.31551 * 20 18 12 32 32 H 1.08994 * 109.47020 * 63.31876 * 20 18 12 33 33 H 1.09006 * 109.47130 * 183.31819 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0081 10 1 1.8269 -0.4201 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 7 2.0197 -0.6925 1.1995 13 6 1.3231 -1.9912 1.3861 14 6 1.5151 -2.3245 2.8811 15 6 1.7591 -0.9643 3.5668 16 1 2.7418 -0.9488 4.0381 17 7 0.7109 -0.6989 4.5612 18 6 1.6939 0.0763 2.4282 19 1 0.6921 0.4998 2.3573 20 6 2.7250 1.1832 2.6573 21 1 -0.3633 -1.0171 -0.1467 22 1 -0.3633 0.3815 0.9542 23 1 -0.3633 0.6356 -0.8076 24 1 0.7082 1.1608 -3.4844 25 1 0.2632 -1.8913 1.1519 26 1 1.7785 -2.7600 0.7619 27 1 2.3781 -2.9765 3.0159 28 1 0.6176 -2.7952 3.2825 29 1 0.7442 -1.3737 5.3106 30 1 0.7813 0.2420 4.9185 31 1 3.7220 0.7457 2.7101 32 1 2.6835 1.8946 1.8327 33 1 2.5040 1.6977 3.5926 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306252886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = -16.919384 kcal Electronic energy + Delta-G solvation = -13471.565039 eV Core-core repulsion = 11338.056053 eV Total energy + Delta-G solvation = -2133.508986 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.39928 -36.27099 -34.16959 -32.24147 -31.53408 -28.21239 -27.32236 -25.54961 -23.59176 -21.10426 -20.34046 -18.10068 -17.32682 -16.61976 -16.19765 -15.86428 -15.18750 -15.07815 -14.76444 -13.94182 -13.58690 -13.43395 -13.16128 -12.82509 -12.58333 -12.45134 -12.24421 -12.17706 -11.95850 -11.76676 -11.68121 -11.28464 -10.87164 -10.49372 -9.56335 -8.96895 -8.10801 -6.21351 1.41701 1.43618 1.51315 2.42828 3.18134 3.34175 3.72756 3.87976 3.94541 4.26926 4.38185 4.58242 4.66686 4.75572 4.82155 4.85671 4.93399 5.02405 5.06118 5.16819 5.22949 5.31114 5.37120 5.51236 5.68613 5.81050 6.14669 6.32050 6.45538 6.66133 6.72763 6.91344 7.47614 8.95868 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054836 B = 0.010071 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.492753 B = 2779.463602 C = 2922.322787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.208 3.792 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.510 5.510 13 C 0.037 3.963 14 C -0.111 4.111 15 C 0.100 3.900 16 H 0.054 0.946 17 N -0.846 5.846 18 C 0.050 3.950 19 H 0.041 0.959 20 C -0.128 4.128 21 H 0.031 0.969 22 H 0.026 0.974 23 H 0.055 0.945 24 H 0.261 0.739 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.353 0.647 30 H 0.347 0.653 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 -3.254 11.970 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.100 3.900 3 H 0.023 0.977 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.234 5.234 13 C -0.091 4.091 14 C -0.149 4.149 15 C -0.012 4.012 16 H 0.072 0.928 17 N -0.379 5.379 18 C -0.059 4.059 19 H 0.059 0.941 20 C -0.186 4.186 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.034 -3.335 11.157 11.691 hybrid contribution 0.012 0.170 -0.550 0.576 sum 1.046 -3.165 10.607 11.119 Atomic orbital electron populations 1.22148 1.00410 0.99636 0.98708 1.19110 0.89934 0.93043 0.87931 0.97689 1.21302 1.30687 1.12354 0.90979 0.92913 1.25722 0.95419 0.95847 1.01888 1.70029 1.37883 1.24211 1.24043 0.85581 0.78700 0.78647 0.78502 1.19704 1.20882 1.19793 1.65564 1.52898 1.03253 1.01679 1.22950 0.96887 0.92800 0.96468 1.22362 1.02304 0.96673 0.93591 1.21949 0.93113 0.94163 0.91970 0.92829 1.58722 1.51011 1.08839 1.19325 1.22740 0.97444 0.94893 0.90832 0.94094 1.21661 0.98878 0.97127 1.00915 0.95023 0.95555 0.92612 0.92999 0.94767 0.92201 0.90478 0.90047 0.83330 0.83905 0.92248 0.94818 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 7.79 71.98 0.56 -7.10 16 2 C 0.21 10.96 2.28 44.17 0.10 11.06 16 3 H 0.01 0.31 7.27 -2.39 -0.02 0.29 16 4 C -0.51 -29.37 8.33 25.60 0.21 -29.16 16 5 H 0.05 3.02 7.78 -2.91 -0.02 2.99 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -54.41 11.42 21.45 0.24 -54.16 16 8 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.51 -22.58 5.02 -836.10 -4.20 -26.77 16 13 C 0.04 1.49 5.76 86.45 0.50 1.99 16 14 C -0.11 -3.33 6.79 31.49 0.21 -3.12 16 15 C 0.10 2.84 3.74 45.81 0.17 3.02 16 16 H 0.05 1.41 7.86 -2.39 -0.02 1.39 16 17 N -0.85 -19.47 9.14 -164.96 -1.51 -20.97 16 18 C 0.05 1.82 2.41 45.06 0.11 1.93 16 19 H 0.04 1.65 5.90 -2.39 -0.01 1.64 16 20 C -0.13 -4.20 9.32 71.98 0.67 -3.53 16 21 H 0.03 1.59 6.42 -2.39 -0.02 1.57 16 22 H 0.03 1.22 6.11 -2.39 -0.01 1.20 16 23 H 0.05 3.12 6.34 -2.39 -0.02 3.11 16 24 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 25 H 0.03 1.46 5.39 -2.39 -0.01 1.45 16 26 H 0.06 2.49 8.11 -2.39 -0.02 2.47 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 2.23 7.95 -2.39 -0.02 2.21 16 29 H 0.35 6.24 9.08 -89.70 -0.81 5.42 16 30 H 0.35 6.98 9.02 -89.69 -0.81 6.17 16 31 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.03 1.25 7.38 -2.39 -0.02 1.23 16 33 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -62.62 255.50 -0.97 -63.59 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.52 Total: 15.37 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 2.99 Total: -23.91 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -5.46 Total: -101.91 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.62 -0.97 -63.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306252886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.670 kcal (2) G-P(sol) polarization free energy of solvation -62.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds