Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.91581 * 2 1 4 4 C 1.54905 * 111.00473 * 236.09234 * 2 1 3 5 5 N 1.47419 * 104.92834 * 278.99353 * 4 2 1 6 6 C 1.36941 * 125.65218 * 155.79798 * 5 4 2 7 7 H 1.07996 * 120.00459 * 180.02562 * 6 5 4 8 8 C 1.38815 * 119.99408 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99985 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99927 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47294 * 89.99647 * 10 8 6 12 12 H 1.48497 * 109.47254 * 210.00512 * 10 8 6 13 13 H 1.48503 * 109.46897 * 330.00038 * 10 8 6 14 14 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 15 15 C 1.54321 * 107.26791 * 1.06162 * 14 5 4 16 16 C 1.53001 * 110.72302 * 263.82651 * 15 14 5 17 17 C 1.52997 * 110.71911 * 140.73224 * 15 14 5 18 18 N 1.46902 * 109.47319 * 61.45743 * 17 15 14 19 19 H 1.08997 * 109.46961 * 182.45019 * 1 2 3 20 20 H 1.09003 * 109.46792 * 302.45317 * 1 2 3 21 21 H 1.08997 * 109.46833 * 62.45285 * 1 2 3 22 22 H 1.09002 * 110.36692 * 160.09726 * 4 2 1 23 23 H 1.08995 * 110.36664 * 37.88528 * 4 2 1 24 24 H 0.97009 * 119.99534 * 180.02562 * 9 8 6 25 25 H 1.08998 * 109.88266 * 120.47537 * 14 5 4 26 26 H 1.09000 * 109.88221 * 241.64354 * 14 5 4 27 27 H 1.09006 * 109.46997 * 58.54814 * 16 15 14 28 28 H 1.08997 * 109.47063 * 178.54423 * 16 15 14 29 29 H 1.08999 * 109.47345 * 298.55049 * 16 15 14 30 30 H 1.09008 * 109.47345 * 181.45165 * 17 15 14 31 31 H 1.08998 * 109.47529 * 301.45317 * 17 15 14 32 32 H 1.00894 * 111.00249 * 56.04365 * 18 17 15 33 33 H 1.00897 * 111.00418 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 2.0136 -2.2167 -0.7758 6 6 1.9438 -3.2992 -1.6116 7 1 1.8940 -4.2966 -1.2004 8 6 1.9370 -3.1145 -2.9874 9 7 1.9982 -1.8989 -3.4884 10 14 1.8411 -4.5910 -4.1276 11 1 0.4179 -4.9049 -4.4123 12 1 2.5438 -4.2814 -5.3986 13 1 2.4855 -5.7607 -3.4780 14 6 2.0290 -2.2682 0.6935 15 6 2.0874 -0.8125 1.2023 16 6 3.5295 -0.4038 1.5094 17 6 1.2019 -0.6348 2.4373 18 7 1.6874 -1.5043 3.5172 19 1 -0.3633 -1.0267 0.0439 20 1 -0.3633 0.5515 0.8672 21 1 -0.3633 0.4753 -0.9111 22 1 3.1183 -0.5235 -1.4023 23 1 1.4684 -0.6448 -2.0840 24 1 1.9930 -1.7699 -4.4499 25 1 1.1223 -2.7518 1.0569 26 1 2.9067 -2.8162 1.0360 27 1 4.1364 -0.5093 0.6101 28 1 3.5501 0.6339 1.8420 29 1 3.9295 -1.0451 2.2948 30 1 1.2380 0.4046 2.7638 31 1 0.1747 -0.9023 2.1895 32 1 2.6581 -1.3196 3.7215 33 1 1.1184 -1.4055 4.3445 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306311978.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -5.314760 kcal Electronic energy + Delta-G solvation = -13602.699506 eV Core-core repulsion = 11469.693734 eV Total energy + Delta-G solvation = -2133.005772 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40074 -36.10810 -34.10530 -32.26504 -31.11071 -28.07052 -27.53517 -25.55520 -23.94354 -21.54141 -19.49207 -18.73493 -16.95224 -16.65418 -16.12181 -15.48514 -15.46304 -14.69916 -14.39570 -14.08826 -13.63661 -13.34515 -13.11487 -12.92482 -12.70430 -12.65942 -12.46654 -12.29777 -11.84950 -11.68498 -11.23249 -11.20008 -10.95526 -10.70513 -9.43190 -8.81122 -7.74263 -5.17226 1.45134 1.47401 1.56070 2.51175 3.33919 3.60775 3.78124 3.94893 4.00620 4.14323 4.41014 4.48691 4.61603 4.70817 4.76859 4.92290 4.99945 5.04441 5.14434 5.16037 5.24468 5.41507 5.42549 5.48854 5.60412 5.73444 5.89317 6.35635 6.37400 6.75885 7.15417 7.84382 8.49278 9.27232 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051555 B = 0.010745 C = 0.010117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.982561 B = 2605.255512 C = 2766.851126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 H 0.085 0.915 4 C 0.163 3.837 5 N -0.624 5.624 6 C -0.237 4.237 7 H 0.074 0.926 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.273 1.273 14 C 0.162 3.838 15 C -0.061 4.061 16 C -0.128 4.128 17 C 0.087 3.913 18 N -0.858 5.858 19 H 0.032 0.968 20 H 0.077 0.923 21 H 0.044 0.956 22 H -0.022 1.022 23 H 0.071 0.929 24 H 0.246 0.754 25 H 0.016 0.984 26 H 0.007 0.993 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.344 0.656 33 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 5.253 11.820 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.123 4.123 3 H 0.103 0.897 4 C 0.038 3.962 5 N -0.350 5.350 6 C -0.366 4.366 7 H 0.092 0.908 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.212 1.212 12 H -0.219 1.219 13 H -0.198 1.198 14 C 0.037 3.963 15 C -0.062 4.062 16 C -0.185 4.185 17 C -0.044 4.044 18 N -0.390 5.390 19 H 0.052 0.948 20 H 0.096 0.904 21 H 0.063 0.937 22 H -0.004 1.004 23 H 0.089 0.911 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.243 4.586 11.139 12.110 hybrid contribution 0.347 -0.037 -0.579 0.676 sum -0.897 4.549 10.560 11.533 Atomic orbital electron populations 1.21557 0.94371 1.00609 1.01286 1.22586 0.96337 0.98270 0.95098 0.89712 1.21720 0.95793 0.82569 0.96141 1.44813 1.86152 1.02778 1.01253 1.19441 1.41966 0.86999 0.88179 0.90795 1.25597 1.03004 0.99493 0.97982 1.70072 1.58818 1.20313 1.10666 0.85071 0.77497 0.78680 0.78064 1.21178 1.21894 1.19779 1.21255 0.96607 0.95514 0.82957 1.21601 0.96187 0.94016 0.94379 1.21708 0.94467 1.01580 1.00793 1.21677 0.97910 0.94690 0.90094 1.58608 1.08186 1.60294 1.11921 0.94835 0.90407 0.93718 1.00370 0.91107 0.94466 0.96645 0.97475 0.94936 0.90791 0.91486 0.93588 0.91446 0.84151 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 7.97 71.98 0.57 -3.65 16 2 C -0.10 -3.90 3.05 -9.30 -0.03 -3.93 16 3 H 0.08 2.84 8.05 -2.39 -0.02 2.82 16 4 C 0.16 8.36 5.02 86.85 0.44 8.80 16 5 N -0.62 -33.94 3.38 -692.01 -2.34 -36.28 16 6 C -0.24 -14.01 10.27 84.03 0.86 -13.15 16 7 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 8 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 9 N -0.95 -58.36 10.09 21.65 0.22 -58.14 16 10 Si 0.98 47.45 29.55 68.60 2.03 49.47 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 14 C 0.16 7.23 5.73 86.73 0.50 7.72 16 15 C -0.06 -2.09 0.57 -50.89 -0.03 -2.12 16 16 C -0.13 -3.89 8.09 71.98 0.58 -3.31 16 17 C 0.09 2.32 4.87 86.30 0.42 2.74 16 18 N -0.86 -20.14 9.30 -186.71 -1.74 -21.87 16 19 H 0.03 1.33 7.68 -2.39 -0.02 1.31 16 20 H 0.08 2.09 7.13 -2.39 -0.02 2.08 16 21 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 22 H -0.02 -1.20 7.71 -2.39 -0.02 -1.22 16 23 H 0.07 4.13 5.78 -2.39 -0.01 4.12 16 24 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 25 H 0.02 0.72 7.82 -2.39 -0.02 0.70 16 26 H 0.01 0.34 7.84 -2.39 -0.02 0.32 16 27 H 0.03 1.17 7.44 -2.38 -0.02 1.15 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.81 6.79 -2.39 -0.02 1.79 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.93 6.47 -2.39 -0.02 1.91 16 32 H 0.34 7.25 7.24 -89.70 -0.65 6.60 16 33 H 0.35 6.31 9.08 -89.70 -0.81 5.49 16 Total: -1.00 -67.54 254.30 1.58 -65.96 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -0.37 Total: 11.33 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 3.78 Total: -10.47 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.86 Total: -116.29 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -67.54 1.58 -65.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306311978.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.642 kcal (2) G-P(sol) polarization free energy of solvation -67.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds