Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.38374 * 2 1 4 4 C 1.54380 * 110.34584 * 122.23574 * 2 1 3 5 5 N 1.48148 * 104.61793 * 142.73726 * 4 2 1 6 6 C 1.36937 * 127.83657 * 140.39535 * 5 4 2 7 7 H 1.07995 * 120.00137 * 344.33761 * 6 5 4 8 8 C 1.38816 * 120.00021 * 164.33949 * 6 5 4 9 9 N 1.31627 * 119.99644 * 350.57121 * 8 6 5 10 10 Si 1.86792 * 120.00185 * 170.57018 * 8 6 5 11 11 H 1.48503 * 109.47200 * 60.00114 * 10 8 6 12 12 H 1.48499 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47450 * 300.00004 * 10 8 6 14 14 C 1.48148 * 104.32321 * 320.41542 * 5 4 2 15 15 C 1.54285 * 110.34203 * 237.77743 * 2 1 3 16 16 C 1.52998 * 110.34409 * 122.14732 * 15 2 1 17 17 C 1.53003 * 110.33993 * 359.97438 * 15 2 1 18 18 N 1.46904 * 109.46871 * 180.02562 * 17 15 2 19 19 H 1.09001 * 109.47236 * 182.22910 * 1 2 3 20 20 H 1.09004 * 109.46858 * 302.22273 * 1 2 3 21 21 H 1.09001 * 109.47553 * 62.22565 * 1 2 3 22 22 H 1.09000 * 110.41187 * 261.52101 * 4 2 1 23 23 H 1.09003 * 110.40722 * 23.95251 * 4 2 1 24 24 H 0.96996 * 119.99730 * 180.02562 * 9 8 6 25 25 H 1.08997 * 110.40428 * 280.79930 * 14 5 4 26 26 H 1.09003 * 110.40730 * 158.37004 * 14 5 4 27 27 H 1.08990 * 109.47437 * 298.52244 * 16 15 2 28 28 H 1.09001 * 109.46970 * 58.53188 * 16 15 2 29 29 H 1.09005 * 109.46775 * 178.52556 * 16 15 2 30 30 H 1.08995 * 109.47388 * 300.00443 * 17 15 2 31 31 H 1.08999 * 109.47208 * 60.00424 * 17 15 2 32 32 H 1.00896 * 111.00043 * 180.02562 * 18 17 15 33 33 H 1.00903 * 110.99930 * 303.95042 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0667 -0.7721 1.2244 5 7 3.2665 -1.4817 0.7224 6 6 4.4615 -1.6690 1.3643 7 1 4.7063 -1.0766 2.2334 8 6 5.3582 -2.6205 0.8978 9 7 4.9903 -3.4674 -0.0403 10 14 7.0868 -2.6989 1.6012 11 1 7.0157 -2.9586 3.0616 12 1 7.8410 -3.7942 0.9403 13 1 7.7780 -1.4066 1.3615 14 6 2.8801 -1.9421 -0.6317 15 6 2.0663 -0.7714 -1.2238 16 6 2.9669 0.1317 -2.0689 17 6 0.9060 -1.3037 -2.0672 18 7 1.4376 -2.0344 -3.2255 19 1 -0.3634 -1.0269 0.0400 20 1 -0.3633 0.5480 0.8694 21 1 -0.3634 0.4789 -0.9093 22 1 2.3401 -0.0796 2.0205 23 1 1.3235 -1.4862 1.5792 24 1 5.6168 -4.1324 -0.3660 25 1 2.2640 -2.8388 -0.5668 26 1 3.7672 -2.1323 -1.2359 27 1 2.3893 0.9799 -2.4360 28 1 3.7949 0.4926 -1.4587 29 1 3.3584 -0.4343 -2.9142 30 1 0.2959 -1.9752 -1.4632 31 1 0.2952 -0.4696 -2.4126 32 1 0.6903 -2.3959 -3.7990 33 1 2.0588 -1.4518 -3.7666 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306311979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = 18.569428 kcal Electronic energy + Delta-G solvation = -13615.201134 eV Core-core repulsion = 11483.231058 eV Total energy + Delta-G solvation = -2131.970076 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.73236 -34.26012 -32.58391 -30.33703 -29.85084 -25.92310 -25.82347 -23.79304 -22.27597 -20.11362 -17.58941 -16.70935 -15.57369 -14.72617 -14.40968 -14.17755 -13.51373 -13.22956 -13.00246 -12.31355 -12.08978 -11.69470 -11.52844 -11.24487 -11.11177 -10.73053 -10.58781 -10.47541 -9.94598 -9.73847 -9.54702 -9.52383 -9.37630 -8.51353 -8.11771 -6.67676 -5.63666 -2.98115 3.45562 3.49932 3.51371 4.57386 5.00998 5.31496 5.41566 5.48681 5.63316 5.74019 5.83202 5.93713 6.03410 6.06806 6.22095 6.34030 6.38394 6.42448 6.58486 6.64295 6.79977 6.92035 7.07980 7.17853 7.56590 7.64242 7.76288 7.85437 7.98308 8.40684 9.26930 9.89588 10.69668 11.49187 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043725 B = 0.011875 C = 0.010424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.205199 B = 2357.246510 C = 2685.347712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.064 0.936 4 C 0.130 3.870 5 N -0.600 5.600 6 C -0.226 4.226 7 H 0.072 0.928 8 C -0.006 4.006 9 N -0.910 5.910 10 Si 0.908 3.092 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.185 3.815 15 C -0.085 4.085 16 C -0.127 4.127 17 C 0.082 3.918 18 N -0.845 5.845 19 H 0.055 0.945 20 H 0.046 0.954 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.019 0.981 24 H 0.253 0.747 25 H 0.020 0.980 26 H 0.085 0.915 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.015 0.985 32 H 0.330 0.670 33 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 6.142 -4.286 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.003 3.997 5 N -0.324 5.324 6 C -0.355 4.355 7 H 0.090 0.910 8 C -0.203 4.203 9 N -0.556 5.556 10 Si 0.738 3.262 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.060 3.940 15 C -0.087 4.087 16 C -0.185 4.185 17 C -0.049 4.049 18 N -0.374 5.374 19 H 0.074 0.926 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.033 0.967 32 H 0.141 0.859 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.117 5.489 -3.733 9.732 hybrid contribution 0.356 0.636 -0.205 0.758 sum -6.760 6.126 -3.938 9.937 Atomic orbital electron populations 1.21879 0.96238 1.01363 1.00358 1.22205 0.94015 0.99040 0.96828 0.91783 1.21713 0.90104 0.94035 0.93809 1.45003 1.09461 1.64087 1.13808 1.18912 0.91497 1.14778 1.10279 0.91030 1.24880 0.99033 0.96608 0.99795 1.69936 1.34225 1.19947 1.31518 0.86276 0.84561 0.77061 0.78307 1.21162 1.21629 1.21245 1.21411 0.96831 0.90151 0.85627 1.21761 0.95066 0.98095 0.93805 1.21736 0.99460 0.97751 0.99515 1.21928 0.95837 0.95009 0.92121 1.58658 1.22823 1.43299 1.12657 0.92584 0.93502 0.93342 0.94081 0.96288 0.93700 0.96193 0.89682 0.94728 0.92144 0.92994 0.91295 0.96685 0.85862 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.94 37.16 0.30 -1.79 16 2 C -0.10 -1.84 3.31 -89.22 -0.30 -2.13 16 3 H 0.06 1.15 7.71 -51.93 -0.40 0.75 16 4 C 0.13 2.85 6.78 -2.41 -0.02 2.84 16 5 N -0.60 -15.97 3.38 -168.86 -0.57 -16.54 16 6 C -0.23 -6.53 10.35 -15.06 -0.16 -6.68 16 7 H 0.07 2.00 7.85 -52.49 -0.41 1.58 16 8 C -0.01 -0.17 5.39 -17.43 -0.09 -0.26 16 9 N -0.91 -27.68 10.89 55.49 0.60 -27.07 16 10 Si 0.91 22.58 29.56 -169.99 -5.03 17.56 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.19 4.63 4.75 -2.41 -0.01 4.62 16 15 C -0.09 -1.64 0.82 -153.11 -0.13 -1.77 16 16 C -0.13 -2.29 7.88 37.16 0.29 -2.00 16 17 C 0.08 1.34 4.48 -3.82 -0.02 1.32 16 18 N -0.84 -13.19 9.33 -10.37 -0.10 -13.29 16 19 H 0.06 0.84 6.75 -51.93 -0.35 0.49 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.64 6.80 -51.93 -0.35 0.29 16 22 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.02 0.42 7.83 -51.93 -0.41 0.02 16 24 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.55 7.83 -51.93 -0.41 0.14 16 26 H 0.08 2.41 6.26 -51.93 -0.32 2.08 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.91 6.58 -51.93 -0.34 0.56 16 30 H 0.07 1.18 6.75 -51.93 -0.35 0.83 16 31 H 0.02 0.22 6.80 -51.93 -0.35 -0.13 16 32 H 0.33 4.21 9.08 -39.29 -0.36 3.85 16 33 H 0.34 4.94 7.02 -39.29 -0.28 4.66 16 LS Contribution 254.32 15.07 3.83 3.83 Total: -1.00 -31.06 254.32 -6.54 -37.60 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.16 Total: 3.76 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.13 Total: -5.85 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.06 Total: -56.90 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.06 -6.54 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306311979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.169 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds