Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.38374 * 2 1 4 4 C 1.54380 * 110.34584 * 122.23574 * 2 1 3 5 5 N 1.48148 * 104.61793 * 142.73726 * 4 2 1 6 6 C 1.36937 * 127.83657 * 140.39535 * 5 4 2 7 7 H 1.07995 * 120.00137 * 344.33761 * 6 5 4 8 8 C 1.38816 * 120.00021 * 164.33949 * 6 5 4 9 9 N 1.31627 * 119.99644 * 350.57121 * 8 6 5 10 10 Si 1.86792 * 120.00185 * 170.57018 * 8 6 5 11 11 H 1.48503 * 109.47200 * 60.00114 * 10 8 6 12 12 H 1.48499 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47450 * 300.00004 * 10 8 6 14 14 C 1.48148 * 104.32321 * 320.41542 * 5 4 2 15 15 C 1.54285 * 110.34203 * 237.77743 * 2 1 3 16 16 C 1.52998 * 110.34409 * 122.14732 * 15 2 1 17 17 C 1.53003 * 110.33993 * 359.97438 * 15 2 1 18 18 N 1.46904 * 109.46871 * 180.02562 * 17 15 2 19 19 H 1.09001 * 109.47236 * 182.22910 * 1 2 3 20 20 H 1.09004 * 109.46858 * 302.22273 * 1 2 3 21 21 H 1.09001 * 109.47553 * 62.22565 * 1 2 3 22 22 H 1.09000 * 110.41187 * 261.52101 * 4 2 1 23 23 H 1.09003 * 110.40722 * 23.95251 * 4 2 1 24 24 H 0.96996 * 119.99730 * 180.02562 * 9 8 6 25 25 H 1.08997 * 110.40428 * 280.79930 * 14 5 4 26 26 H 1.09003 * 110.40730 * 158.37004 * 14 5 4 27 27 H 1.08990 * 109.47437 * 298.52244 * 16 15 2 28 28 H 1.09001 * 109.46970 * 58.53188 * 16 15 2 29 29 H 1.09005 * 109.46775 * 178.52556 * 16 15 2 30 30 H 1.08995 * 109.47388 * 300.00443 * 17 15 2 31 31 H 1.08999 * 109.47208 * 60.00424 * 17 15 2 32 32 H 1.00896 * 111.00043 * 180.02562 * 18 17 15 33 33 H 1.00903 * 110.99930 * 303.95042 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0667 -0.7721 1.2244 5 7 3.2665 -1.4817 0.7224 6 6 4.4615 -1.6690 1.3643 7 1 4.7063 -1.0766 2.2334 8 6 5.3582 -2.6205 0.8978 9 7 4.9903 -3.4674 -0.0403 10 14 7.0868 -2.6989 1.6012 11 1 7.0157 -2.9586 3.0616 12 1 7.8410 -3.7942 0.9403 13 1 7.7780 -1.4066 1.3615 14 6 2.8801 -1.9421 -0.6317 15 6 2.0663 -0.7714 -1.2238 16 6 2.9669 0.1317 -2.0689 17 6 0.9060 -1.3037 -2.0672 18 7 1.4376 -2.0344 -3.2255 19 1 -0.3634 -1.0269 0.0400 20 1 -0.3633 0.5480 0.8694 21 1 -0.3634 0.4789 -0.9093 22 1 2.3401 -0.0796 2.0205 23 1 1.3235 -1.4862 1.5792 24 1 5.6168 -4.1324 -0.3660 25 1 2.2640 -2.8388 -0.5668 26 1 3.7672 -2.1323 -1.2359 27 1 2.3893 0.9799 -2.4360 28 1 3.7949 0.4926 -1.4587 29 1 3.3584 -0.4343 -2.9142 30 1 0.2959 -1.9752 -1.4632 31 1 0.2952 -0.4696 -2.4126 32 1 0.6903 -2.3959 -3.7990 33 1 2.0588 -1.4518 -3.7666 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306311979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -3.787583 kcal Electronic energy + Delta-G solvation = -13616.170607 eV Core-core repulsion = 11483.231058 eV Total energy + Delta-G solvation = -2132.939549 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.34524 -35.98553 -34.30841 -32.19920 -31.33581 -27.88952 -27.43191 -25.27440 -24.02821 -21.90475 -19.17569 -18.71980 -17.09036 -16.46785 -16.15918 -15.55744 -15.33702 -14.94280 -14.62833 -13.75259 -13.49167 -13.33297 -13.11539 -13.03421 -12.74773 -12.53633 -12.36115 -12.23126 -11.82989 -11.65457 -11.22188 -11.09863 -11.00225 -10.65539 -9.33503 -8.80875 -7.84241 -5.21213 1.44670 1.48449 1.55063 2.50774 3.32484 3.72814 3.75310 4.01429 4.04691 4.17055 4.45200 4.53077 4.67798 4.68700 4.73689 4.86521 4.95310 5.05984 5.10446 5.21786 5.26805 5.33128 5.51358 5.51889 5.60433 5.76988 5.91765 6.28324 6.43442 6.78340 7.08428 7.76343 8.56637 9.27671 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043725 B = 0.011875 C = 0.010424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.205199 B = 2357.246510 C = 2685.347712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 H 0.073 0.927 4 C 0.123 3.877 5 N -0.627 5.627 6 C -0.242 4.242 7 H 0.075 0.925 8 C -0.064 4.064 9 N -0.943 5.943 10 Si 0.977 3.023 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.277 1.277 14 C 0.197 3.803 15 C -0.080 4.080 16 C -0.121 4.121 17 C 0.090 3.910 18 N -0.863 5.863 19 H 0.050 0.950 20 H 0.063 0.937 21 H 0.074 0.926 22 H 0.045 0.955 23 H 0.016 0.984 24 H 0.247 0.753 25 H -0.017 1.017 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.348 0.652 33 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 7.829 -4.630 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 H 0.091 0.909 4 C -0.003 4.003 5 N -0.351 5.351 6 C -0.371 4.371 7 H 0.093 0.907 8 C -0.257 4.257 9 N -0.591 5.591 10 Si 0.804 3.196 11 H -0.202 1.202 12 H -0.220 1.220 13 H -0.203 1.203 14 C 0.072 3.928 15 C -0.082 4.082 16 C -0.178 4.178 17 C -0.041 4.041 18 N -0.396 5.396 19 H 0.069 0.931 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.001 0.999 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.161 0.839 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.200 7.202 -4.073 11.649 hybrid contribution 0.654 0.096 -0.061 0.664 sum -7.546 7.298 -4.133 11.282 Atomic orbital electron populations 1.21823 0.92947 1.01728 1.02557 1.22139 0.96647 0.98383 0.93989 0.90859 1.21942 0.88525 0.93971 0.95845 1.45343 1.10332 1.64501 1.14888 1.19319 0.92770 1.14618 1.10411 0.90678 1.25734 1.03010 0.96490 1.00500 1.70157 1.35237 1.20658 1.33064 0.85192 0.79545 0.77031 0.77800 1.20157 1.21951 1.20288 1.21138 0.95231 0.91368 0.85064 1.21674 0.95614 0.96048 0.94816 1.21663 0.98755 0.98650 0.98768 1.21795 0.94568 0.95913 0.91813 1.58577 1.24010 1.43844 1.13135 0.93126 0.91792 0.90721 0.93659 0.96638 0.94378 0.99941 0.93703 0.90974 0.94979 0.93020 0.92205 0.93190 0.83887 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 7.94 71.98 0.57 -2.86 16 2 C -0.09 -3.14 3.31 -9.89 -0.03 -3.17 16 3 H 0.07 2.41 7.71 -2.38 -0.02 2.39 16 4 C 0.12 5.34 6.78 86.53 0.59 5.93 16 5 N -0.63 -34.08 3.38 -688.15 -2.32 -36.40 16 6 C -0.24 -14.25 10.35 84.03 0.87 -13.39 16 7 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 8 C -0.06 -3.77 5.39 84.86 0.46 -3.31 16 9 N -0.94 -59.50 10.89 21.65 0.24 -59.26 16 10 Si 0.98 47.26 29.56 68.60 2.03 49.29 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.20 10.16 4.75 86.53 0.41 10.57 16 15 C -0.08 -2.97 0.82 -51.27 -0.04 -3.01 16 16 C -0.12 -4.16 7.88 71.98 0.57 -3.59 16 17 C 0.09 2.72 4.48 86.30 0.39 3.11 16 18 N -0.86 -25.64 9.33 -186.71 -1.74 -27.38 16 19 H 0.05 1.37 6.75 -2.39 -0.02 1.36 16 20 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 21 H 0.07 1.57 6.80 -2.39 -0.02 1.56 16 22 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.02 0.69 7.83 -2.39 -0.02 0.67 16 24 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 25 H -0.02 -1.00 7.83 -2.39 -0.02 -1.02 16 26 H 0.04 2.64 6.26 -2.39 -0.01 2.63 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.75 6.58 -2.38 -0.02 1.74 16 30 H 0.06 1.94 6.75 -2.39 -0.02 1.92 16 31 H 0.05 1.21 6.80 -2.39 -0.02 1.19 16 32 H 0.35 8.15 9.08 -89.70 -0.81 7.33 16 33 H 0.34 9.45 7.02 -89.69 -0.63 8.82 16 Total: -1.00 -69.27 254.32 1.63 -67.65 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.35 Total: 15.83 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 3.78 Total: -9.72 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -3.83 Total: -123.05 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -69.27 1.63 -67.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306311979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.861 kcal (2) G-P(sol) polarization free energy of solvation -69.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds