Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.78064 * 2 1 4 4 C 1.54327 * 110.71769 * 123.23474 * 2 1 3 5 5 N 1.47031 * 107.26879 * 140.55849 * 4 2 1 6 6 C 1.36938 * 125.64895 * 181.03688 * 5 4 2 7 7 H 1.07997 * 120.00078 * 180.02562 * 6 5 4 8 8 C 1.38808 * 119.99698 * 0.02707 * 6 5 4 9 9 N 1.31619 * 120.00429 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99884 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47039 * 60.00089 * 10 8 6 12 12 H 1.48500 * 109.47408 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47353 * 300.00052 * 10 8 6 14 14 C 1.47422 * 108.70136 * 1.05978 * 5 4 2 15 15 C 1.54908 * 104.83357 * 335.86884 * 14 5 4 16 16 C 1.53000 * 111.04054 * 278.92067 * 15 14 5 17 17 C 1.53004 * 111.00469 * 155.08554 * 15 14 5 18 18 N 1.46898 * 109.47158 * 67.80329 * 17 15 14 19 19 H 1.08999 * 109.47046 * 298.21285 * 1 2 3 20 20 H 1.08993 * 109.46868 * 58.22013 * 1 2 3 21 21 H 1.09009 * 109.46992 * 178.21853 * 1 2 3 22 22 H 1.08998 * 109.88371 * 259.97284 * 4 2 1 23 23 H 1.08994 * 109.88463 * 21.14580 * 4 2 1 24 24 H 0.97002 * 120.00534 * 179.97438 * 9 8 6 25 25 H 1.09000 * 110.36378 * 217.03375 * 14 5 4 26 26 H 1.09001 * 110.46274 * 94.75551 * 14 5 4 27 27 H 1.08996 * 109.47138 * 172.21095 * 16 15 14 28 28 H 1.08998 * 109.47159 * 292.21896 * 16 15 14 29 29 H 1.09004 * 109.46945 * 52.21864 * 16 15 14 30 30 H 1.09007 * 109.47049 * 187.80742 * 17 15 14 31 31 H 1.09005 * 109.47077 * 307.80496 * 17 15 14 32 32 H 1.00902 * 110.99596 * 56.04772 * 18 17 15 33 33 H 1.00895 * 110.99803 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7911 1.2074 5 7 3.2446 -1.5507 0.7391 6 6 4.0042 -2.3971 1.5019 7 1 4.8467 -2.9105 1.0626 8 6 3.6913 -2.5951 2.8397 9 7 2.6649 -1.9690 3.3752 10 14 4.7271 -3.7502 3.8800 11 1 6.1310 -3.2669 3.9076 12 1 4.1894 -3.7867 5.2638 13 1 4.6848 -5.1149 3.2959 14 6 3.4633 -1.2498 -0.6874 15 6 2.0790 -0.7955 -1.2137 16 6 1.1889 -1.9995 -1.5283 17 6 2.2278 0.1079 -2.4396 18 7 2.7487 -0.6776 -3.5664 19 1 -0.3633 0.4858 0.9056 20 1 -0.3633 0.5412 -0.8736 21 1 -0.3633 -1.0273 -0.0320 22 1 2.3741 -0.1023 1.9978 23 1 1.3130 -1.4758 1.5776 24 1 2.4460 -2.1077 4.3100 25 1 3.7961 -2.1426 -1.2167 26 1 4.1936 -0.4485 -0.8001 27 1 0.1817 -1.6553 -1.7627 28 1 1.5966 -2.5393 -2.3830 29 1 1.1543 -2.6617 -0.6632 30 1 1.2556 0.5234 -2.7048 31 1 2.9196 0.9188 -2.2114 32 1 2.1581 -1.4735 -3.7559 33 1 2.8556 -0.1030 -4.3888 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306311980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -5.793890 kcal Electronic energy + Delta-G solvation = -13556.905243 eV Core-core repulsion = 11423.878695 eV Total energy + Delta-G solvation = -2133.026549 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36180 -36.10334 -34.25843 -32.57700 -30.67243 -28.20414 -27.16413 -26.05331 -23.85046 -21.40778 -19.43832 -18.74290 -17.15758 -16.68796 -15.94268 -15.61230 -15.44559 -14.81678 -14.45924 -14.03231 -13.58442 -13.37792 -13.05218 -12.89581 -12.77664 -12.59749 -12.51662 -12.11954 -11.84884 -11.75269 -11.27450 -11.22040 -11.01962 -10.67184 -9.42385 -8.84364 -7.82578 -5.17240 1.43808 1.47826 1.54050 2.50634 3.34259 3.57887 3.78533 3.93953 4.00587 4.11728 4.47639 4.49023 4.58436 4.69764 4.77474 4.92154 4.98615 5.04998 5.10524 5.21002 5.24978 5.28705 5.43827 5.49963 5.63831 5.74648 5.86388 6.23003 6.36728 6.76040 7.13498 7.82214 8.47949 9.27418 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049552 B = 0.010935 C = 0.009689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.932445 B = 2560.000246 C = 2889.176986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 H 0.070 0.930 4 C 0.196 3.804 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.077 0.923 8 C -0.069 4.069 9 N -0.952 5.952 10 Si 0.978 3.022 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.277 1.277 14 C 0.155 3.845 15 C -0.059 4.059 16 C -0.124 4.124 17 C 0.090 3.910 18 N -0.857 5.857 19 H 0.048 0.952 20 H 0.078 0.922 21 H 0.052 0.948 22 H -0.006 1.006 23 H 0.012 0.988 24 H 0.246 0.754 25 H 0.032 0.968 26 H 0.009 0.991 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.345 0.655 33 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 3.752 -12.037 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.124 4.124 3 H 0.088 0.912 4 C 0.071 3.929 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.095 0.905 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.806 3.194 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.203 1.203 14 C 0.030 3.970 15 C -0.060 4.060 16 C -0.181 4.181 17 C -0.041 4.041 18 N -0.390 5.390 19 H 0.067 0.933 20 H 0.097 0.903 21 H 0.071 0.929 22 H 0.012 0.988 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.027 0.973 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.918 3.562 -11.383 12.554 hybrid contribution -0.165 -0.369 0.752 0.854 sum -4.083 3.194 -10.631 11.827 Atomic orbital electron populations 1.21690 0.93125 1.01798 1.01879 1.22407 0.96978 0.98186 0.94849 0.91182 1.20908 0.87984 0.91733 0.92234 1.44821 1.32505 1.51106 1.06991 1.19424 1.07801 1.17862 0.92060 0.90510 1.25650 0.99959 1.02391 0.98118 1.70199 1.30407 1.47123 1.12357 0.85153 0.78002 0.78767 0.77429 1.20444 1.21867 1.20259 1.21579 0.95280 0.96628 0.83554 1.21660 0.94658 0.95796 0.93868 1.21649 0.99228 0.96694 1.00508 1.21553 0.98261 0.94535 0.89768 1.58638 1.57549 1.13264 1.09501 0.93287 0.90303 0.92923 0.98794 0.96948 0.94514 0.94932 0.97349 0.90700 0.91642 0.95393 0.93482 0.91791 0.84024 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.27 71.98 0.60 -3.30 16 2 C -0.10 -3.93 2.88 -9.60 -0.03 -3.96 16 3 H 0.07 2.53 8.04 -2.39 -0.02 2.51 16 4 C 0.20 10.20 4.65 86.73 0.40 10.60 16 5 N -0.63 -34.36 3.38 -691.98 -2.34 -36.71 16 6 C -0.24 -14.41 10.28 84.03 0.86 -13.55 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 8 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 9 N -0.95 -59.57 10.31 21.65 0.22 -59.35 16 10 Si 0.98 47.69 29.55 68.60 2.03 49.72 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 C 0.15 6.86 6.02 86.86 0.52 7.39 16 15 C -0.06 -2.00 0.55 -50.79 -0.03 -2.03 16 16 C -0.12 -3.93 7.15 71.98 0.51 -3.41 16 17 C 0.09 2.33 5.84 86.30 0.50 2.83 16 18 N -0.86 -19.50 9.43 -186.70 -1.76 -21.26 16 19 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.05 1.67 6.41 -2.38 -0.02 1.65 16 22 H -0.01 -0.37 7.51 -2.39 -0.02 -0.38 16 23 H 0.01 0.71 7.06 -2.39 -0.02 0.70 16 24 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.03 1.47 8.05 -2.39 -0.02 1.45 16 26 H 0.01 0.39 7.98 -2.39 -0.02 0.38 16 27 H 0.07 1.95 6.66 -2.39 -0.02 1.93 16 28 H 0.06 1.84 6.45 -2.39 -0.02 1.82 16 29 H 0.03 1.10 7.91 -2.39 -0.02 1.08 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.74 8.07 -2.38 -0.02 1.72 16 32 H 0.35 7.16 6.95 -89.69 -0.62 6.54 16 33 H 0.35 6.04 9.08 -89.70 -0.81 5.22 16 Total: -1.00 -68.95 255.87 1.62 -67.33 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -0.35 Total: 9.31 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 3.81 Total: -9.04 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -3.88 Total: -117.31 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -68.95 1.62 -67.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306311980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.539 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds