Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.64092 * 2 1 4 4 C 1.54325 * 110.72022 * 236.66659 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.45263 * 4 2 1 6 6 C 1.36938 * 125.79079 * 178.92205 * 5 4 2 7 7 H 1.08005 * 119.99558 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00146 * 0.02562 * 6 5 4 9 9 N 1.31620 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47294 * 89.99594 * 10 8 6 12 12 H 1.48503 * 109.46797 * 209.99511 * 10 8 6 13 13 H 1.48500 * 109.47035 * 329.99310 * 10 8 6 14 14 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 15 15 C 1.54908 * 104.92961 * 24.15407 * 14 5 4 16 16 C 1.53007 * 111.00481 * 81.01010 * 15 14 5 17 17 C 1.52999 * 111.00707 * 204.82088 * 15 14 5 18 18 N 1.46897 * 109.47363 * 298.55121 * 17 15 14 19 19 H 1.08995 * 109.46983 * 296.85562 * 1 2 3 20 20 H 1.09001 * 109.47276 * 56.86026 * 1 2 3 21 21 H 1.09004 * 109.46998 * 176.85914 * 1 2 3 22 22 H 1.09004 * 109.88239 * 338.86059 * 4 2 1 23 23 H 1.08995 * 109.88239 * 99.86981 * 4 2 1 24 24 H 0.96999 * 120.00175 * 180.02562 * 9 8 6 25 25 H 1.09002 * 110.36696 * 265.26054 * 14 5 4 26 26 H 1.08995 * 110.36608 * 143.04891 * 14 5 4 27 27 H 1.09001 * 109.46742 * 61.44802 * 16 15 14 28 28 H 1.08996 * 109.47279 * 181.45530 * 16 15 14 29 29 H 1.09002 * 109.47053 * 301.45273 * 16 15 14 30 30 H 1.09009 * 109.46588 * 58.54618 * 17 15 14 31 31 H 1.08994 * 109.47505 * 178.54807 * 17 15 14 32 32 H 1.00905 * 110.99748 * 56.03697 * 18 17 15 33 33 H 1.00894 * 111.00104 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2060 5 7 3.2466 -1.5538 -0.7364 6 6 4.0073 -2.4027 -1.4954 7 1 4.8488 -2.9152 -1.0531 8 6 3.6967 -2.6044 -2.8332 9 7 2.6708 -1.9802 -3.3721 10 14 4.7339 -3.7628 -3.8684 11 1 4.1728 -5.1353 -3.7879 12 1 4.7247 -3.3064 -5.2815 13 1 6.1287 -3.7675 -3.3588 14 6 3.4633 -1.2486 0.6896 15 6 2.0790 -0.7934 1.2151 16 6 1.1894 -1.9974 1.5311 17 6 2.2278 0.1113 2.4399 18 7 2.8885 -0.6324 3.5207 19 1 -0.3633 0.4642 0.9168 20 1 -0.3634 0.5618 -0.8605 21 1 -0.3633 -1.0262 -0.0563 22 1 1.3130 -1.4785 -1.5751 23 1 2.3715 -0.1059 -1.9986 24 1 2.4536 -2.1214 -4.3068 25 1 4.1932 -0.4465 0.7992 26 1 3.7969 -2.1394 1.2217 27 1 1.6555 -2.5985 2.3118 28 1 0.2149 -1.6492 1.8736 29 1 1.0640 -2.6022 0.6330 30 1 2.8290 0.9819 2.1777 31 1 1.2424 0.4372 2.7728 32 1 3.7771 -1.0006 3.2156 33 1 2.9988 -0.0560 4.3414 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306311981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -8.710635 kcal Electronic energy + Delta-G solvation = -13560.560466 eV Core-core repulsion = 11427.407438 eV Total energy + Delta-G solvation = -2133.153028 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35842 -36.02548 -34.27647 -32.60560 -30.73515 -28.13429 -26.97260 -26.14873 -23.98441 -21.39152 -19.45006 -18.81639 -17.13252 -16.43759 -15.96197 -15.61753 -15.43135 -15.05270 -14.42916 -14.06571 -13.51297 -13.17931 -13.05150 -12.87933 -12.74704 -12.70416 -12.55072 -12.28500 -11.88406 -11.73254 -11.29886 -11.14716 -10.98069 -10.69164 -9.48426 -8.86750 -7.84167 -5.19078 1.43717 1.46240 1.54691 2.49283 3.33355 3.56586 3.73692 3.93299 3.98003 4.16068 4.42820 4.49626 4.64703 4.71765 4.82257 4.88787 4.92989 5.07953 5.10425 5.20391 5.27665 5.31587 5.44505 5.50568 5.61662 5.73699 5.84377 6.20572 6.30669 6.71669 7.11119 7.79370 8.45584 9.26305 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048620 B = 0.011037 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.754761 B = 2536.317160 C = 2879.501707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 H 0.071 0.929 4 C 0.196 3.804 5 N -0.626 5.626 6 C -0.241 4.241 7 H 0.080 0.920 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.979 3.021 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.269 1.269 14 C 0.141 3.859 15 C -0.059 4.059 16 C -0.106 4.106 17 C 0.089 3.911 18 N -0.850 5.850 19 H 0.078 0.922 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.011 0.989 23 H -0.005 1.005 24 H 0.246 0.754 25 H 0.013 0.987 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.020 0.980 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.340 0.660 33 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 4.457 11.366 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 H 0.089 0.911 4 C 0.071 3.929 5 N -0.352 5.352 6 C -0.370 4.370 7 H 0.098 0.902 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.807 3.193 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.194 1.194 14 C 0.016 3.984 15 C -0.060 4.060 16 C -0.163 4.163 17 C -0.042 4.042 18 N -0.381 5.381 19 H 0.097 0.903 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.030 0.970 23 H 0.014 0.986 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.153 0.847 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.911 3.904 11.141 12.159 hybrid contribution 1.365 0.070 -1.314 1.896 sum -1.546 3.974 9.827 10.713 Atomic orbital electron populations 1.21667 0.93217 1.01536 1.01987 1.22411 0.97008 0.98134 0.94814 0.91086 1.20958 0.87964 0.91735 0.92261 1.44804 1.32513 1.51013 1.06830 1.19468 1.07818 1.17730 0.92028 0.90202 1.25662 0.99962 1.02351 0.98194 1.70206 1.30503 1.47079 1.12288 0.85075 0.78479 0.78184 0.77589 1.21283 1.22051 1.19353 1.21745 0.95383 0.96816 0.84448 1.21692 0.94784 0.95950 0.93588 1.21438 0.98986 0.96450 0.99466 1.21595 0.99605 0.93106 0.89873 1.58676 1.29365 1.42018 1.08052 0.90288 0.93105 0.93411 0.97041 0.98637 0.94520 0.96909 0.94337 0.92297 0.91403 0.96040 0.95541 0.89664 0.84733 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 8.17 71.98 0.59 -3.38 16 2 C -0.10 -3.90 2.88 -9.60 -0.03 -3.93 16 3 H 0.07 2.53 8.01 -2.39 -0.02 2.51 16 4 C 0.20 10.09 4.60 86.68 0.40 10.49 16 5 N -0.63 -33.51 3.39 -691.30 -2.34 -35.85 16 6 C -0.24 -14.07 10.28 84.03 0.86 -13.21 16 7 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 8 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 9 N -0.95 -59.24 10.33 21.65 0.22 -59.02 16 10 Si 0.98 47.20 29.55 68.60 2.03 49.22 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 14 C 0.14 5.95 5.19 86.85 0.45 6.40 16 15 C -0.06 -2.01 0.55 -50.79 -0.03 -2.04 16 16 C -0.11 -3.63 7.19 71.98 0.52 -3.11 16 17 C 0.09 2.31 5.82 86.30 0.50 2.81 16 18 N -0.85 -19.48 9.11 -186.72 -1.70 -21.18 16 19 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.05 1.60 6.69 -2.39 -0.02 1.58 16 22 H 0.01 0.66 7.02 -2.38 -0.02 0.64 16 23 H 0.00 -0.27 7.51 -2.39 -0.02 -0.29 16 24 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.01 0.54 8.04 -2.39 -0.02 0.53 16 26 H 0.04 1.61 7.93 -2.39 -0.02 1.59 16 27 H 0.06 1.95 7.84 -2.39 -0.02 1.93 16 28 H 0.07 1.97 7.18 -2.39 -0.02 1.96 16 29 H 0.02 0.87 7.67 -2.39 -0.02 0.85 16 30 H 0.03 0.68 8.11 -2.38 -0.02 0.66 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.34 8.16 7.93 -89.69 -0.71 7.45 16 33 H 0.35 6.06 9.08 -89.70 -0.81 5.24 16 Total: -1.00 -67.25 257.46 1.50 -65.76 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -0.44 Total: 10.65 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 3.73 Total: -9.57 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -3.82 Total: -116.05 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -67.25 1.50 -65.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306311981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.045 kcal (2) G-P(sol) polarization free energy of solvation -67.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds