Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.37197 * 2 1 4 4 C 1.54616 * 110.35445 * 237.70422 * 2 1 3 5 5 N 1.48565 * 104.59550 * 217.21862 * 4 2 1 6 6 C 1.46900 * 111.00018 * 159.09571 * 5 4 2 7 7 C 1.48564 * 104.21929 * 39.54027 * 5 4 2 8 8 C 1.54259 * 110.32649 * 122.18666 * 2 1 3 9 9 H 1.08995 * 110.32424 * 237.89528 * 8 2 1 10 10 N 1.46905 * 110.32242 * 359.97438 * 8 2 1 11 11 C 1.46901 * 110.99870 * 203.57650 * 10 8 2 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46907 * 60.00117 * 16 14 12 18 18 H 1.48504 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47302 * 300.00070 * 16 14 12 20 20 H 1.09004 * 109.47157 * 297.81392 * 1 2 3 21 21 H 1.08999 * 109.47209 * 57.81441 * 1 2 3 22 22 H 1.09005 * 109.46947 * 177.81595 * 1 2 3 23 23 H 1.08998 * 110.36441 * 98.46818 * 4 2 1 24 24 H 1.08995 * 110.55877 * 336.07179 * 4 2 1 25 25 H 1.09004 * 109.47066 * 304.58460 * 6 5 4 26 26 H 1.09003 * 109.46969 * 64.58047 * 6 5 4 27 27 H 1.08990 * 109.47171 * 184.58289 * 6 5 4 28 28 H 1.08998 * 110.40651 * 201.73625 * 7 5 4 29 29 H 1.08998 * 110.50922 * 79.34924 * 7 5 4 30 30 H 1.00901 * 110.99869 * 79.62361 * 10 8 2 31 31 H 1.09004 * 109.47031 * 299.99620 * 11 10 8 32 32 H 1.08995 * 109.47111 * 59.99900 * 11 10 8 33 33 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0678 -0.7745 -1.2254 5 7 3.2714 -1.4844 -0.7208 6 6 3.6106 -2.6241 -1.5834 7 6 2.8822 -1.9422 0.6379 8 6 2.0658 -0.7705 1.2242 9 1 2.7067 -0.1264 1.8262 10 7 0.9512 -1.2798 2.0345 11 6 1.3709 -1.5061 3.4239 12 6 0.2041 -2.0276 4.2224 13 1 -0.7536 -2.1757 3.7455 14 6 0.3588 -2.3148 5.5621 15 7 1.5248 -2.1340 6.1429 16 14 -1.0877 -2.9605 6.5520 17 1 -1.5589 -4.2398 5.9630 18 1 -0.6635 -3.1895 7.9566 19 1 -2.1904 -1.9665 6.5232 20 1 -0.3634 0.4795 0.9090 21 1 -0.3633 0.5474 -0.8697 22 1 -0.3633 -1.0270 -0.0392 23 1 2.3408 -0.0822 -2.0217 24 1 1.3263 -1.4895 -1.5818 25 1 2.7469 -3.2833 -1.6707 26 1 3.8917 -2.2606 -2.5718 27 1 4.4447 -3.1738 -1.1476 28 1 3.7685 -2.1291 1.2443 29 1 2.2680 -2.8406 0.5768 30 1 0.5660 -2.1208 1.6315 31 1 2.1801 -2.2361 3.4447 32 1 1.7170 -0.5675 3.8564 33 1 1.6337 -2.3364 7.0853 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306386614.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = -18.846197 kcal Electronic energy + Delta-G solvation = -12991.421508 eV Core-core repulsion = 10857.828969 eV Total energy + Delta-G solvation = -2133.592539 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.41420 -36.49925 -34.69716 -33.25435 -30.08037 -28.26931 -27.17316 -25.05558 -23.70552 -22.25181 -20.40901 -18.54017 -17.35123 -16.53237 -16.43744 -15.78388 -15.29573 -14.78286 -14.59857 -14.20185 -13.94627 -13.53115 -13.34072 -13.06937 -12.74599 -12.67543 -12.39832 -12.32756 -12.02487 -11.86743 -11.70653 -11.36654 -11.14814 -10.66278 -9.56285 -9.05328 -8.22424 -6.33878 1.40748 1.44304 1.52329 2.39627 3.02335 3.10992 3.58178 3.67711 3.87669 4.11070 4.24441 4.42014 4.52091 4.54543 4.65210 4.76548 4.86784 4.91437 4.94327 4.96389 5.10952 5.22912 5.33563 5.41421 5.60794 5.62334 5.78911 6.03195 6.04996 6.45036 6.71729 6.88806 7.37147 8.88922 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053159 B = 0.007872 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.599506 B = 3556.058610 C = 3799.516282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 H 0.080 0.920 4 C 0.040 3.960 5 N -0.525 5.525 6 C 0.013 3.987 7 C 0.015 3.985 8 C 0.079 3.921 9 H 0.058 0.942 10 N -0.667 5.667 11 C 0.210 3.790 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.973 3.027 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.268 1.268 20 H 0.048 0.952 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.029 0.971 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.333 0.667 31 H -0.040 1.040 32 H -0.003 1.003 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 0.675 -14.328 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 H 0.099 0.901 4 C -0.087 4.087 5 N -0.249 5.249 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.032 4.032 9 H 0.077 0.923 10 N -0.296 5.296 11 C 0.082 3.918 12 C -0.575 4.575 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.193 1.193 20 H 0.067 0.933 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.115 0.885 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.151 0.849 31 H -0.022 1.022 32 H 0.015 0.985 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.521 1.623 -14.025 14.129 hybrid contribution -0.333 -1.725 0.897 1.972 sum 0.188 -0.101 -13.128 13.130 Atomic orbital electron populations 1.21412 0.93325 1.01362 1.01062 1.21964 0.97010 0.99010 0.92342 0.90118 1.23314 0.90596 0.97522 0.97287 1.65333 1.33890 1.23806 1.01878 1.22566 1.00499 0.92271 0.98197 1.23734 0.99023 0.97103 0.91686 1.22373 0.90980 0.95342 0.94555 0.92334 1.60768 1.30587 1.35877 1.02407 1.19199 0.93953 0.93215 0.85387 1.21530 0.97558 1.43334 0.95044 0.91674 1.25962 0.98928 0.95808 0.99031 1.70095 1.25381 1.49751 1.12222 0.85385 0.78783 0.79039 0.77082 1.19116 1.20842 1.19273 0.93323 0.91777 0.93580 0.88456 0.93160 0.95216 0.89405 0.91447 0.91959 0.94217 0.84940 1.02219 0.98533 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.19 8.12 71.98 0.58 -2.60 16 2 C -0.08 -2.42 3.67 -9.82 -0.04 -2.46 16 3 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.04 0.99 6.04 86.53 0.52 1.51 16 5 N -0.53 -14.61 5.66 -907.14 -5.13 -19.75 16 6 C 0.01 0.29 9.53 127.69 1.22 1.51 16 7 C 0.01 0.49 6.13 86.45 0.53 1.02 16 8 C 0.08 2.90 3.34 45.81 0.15 3.05 16 9 H 0.06 2.39 7.84 -2.39 -0.02 2.37 16 10 N -0.67 -28.64 4.54 -490.96 -2.23 -30.86 16 11 C 0.21 11.40 5.28 85.56 0.45 11.85 16 12 C -0.54 -30.80 9.32 25.60 0.24 -30.57 16 13 H 0.07 3.61 7.81 -2.91 -0.02 3.58 16 14 C 0.00 0.05 5.46 84.66 0.46 0.52 16 15 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 16 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.05 1.32 7.48 -2.38 -0.02 1.30 16 23 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.05 1.17 7.60 -2.39 -0.02 1.16 16 25 H 0.03 0.64 7.97 -2.38 -0.02 0.62 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.04 1.35 7.41 -2.39 -0.02 1.33 16 30 H 0.33 13.70 7.66 -89.69 -0.69 13.02 16 31 H -0.04 -2.33 8.14 -2.39 -0.02 -2.35 16 32 H 0.00 -0.21 8.07 -2.39 -0.02 -0.23 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -62.87 266.23 -0.55 -63.42 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.38 Total: 13.66 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.12 Total: -16.17 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -7.08 Total: -107.43 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -62.87 -0.55 -63.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306386614.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.571 kcal (2) G-P(sol) polarization free energy of solvation -62.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds