Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.37382 * 2 1 4 4 C 1.54614 * 110.35709 * 122.30588 * 2 1 3 5 5 N 1.48552 * 104.59990 * 142.77823 * 4 2 1 6 6 C 1.46895 * 111.00080 * 200.89976 * 5 4 2 7 7 C 1.48561 * 104.22296 * 320.45877 * 5 4 2 8 8 C 1.54268 * 110.32384 * 237.82169 * 2 1 3 9 9 H 1.08993 * 110.32440 * 122.10279 * 8 2 1 10 10 N 1.46902 * 110.32115 * 359.97438 * 8 2 1 11 11 C 1.46904 * 110.99709 * 156.42697 * 10 8 2 12 12 C 1.50695 * 109.46798 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00546 * 0.27742 * 12 11 10 14 14 C 1.37885 * 119.99721 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47228 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46793 * 120.00131 * 16 14 12 19 19 H 1.48500 * 109.47000 * 240.00224 * 16 14 12 20 20 H 1.09003 * 109.47175 * 182.17902 * 1 2 3 21 21 H 1.09001 * 109.46727 * 302.17785 * 1 2 3 22 22 H 1.09001 * 109.46913 * 62.18010 * 1 2 3 23 23 H 1.08997 * 110.45880 * 23.96690 * 4 2 1 24 24 H 1.09008 * 110.45993 * 261.58383 * 4 2 1 25 25 H 1.09005 * 109.47354 * 175.41506 * 6 5 4 26 26 H 1.08996 * 109.47611 * 295.41810 * 6 5 4 27 27 H 1.09002 * 109.47231 * 55.42075 * 6 5 4 28 28 H 1.09005 * 110.41045 * 280.70870 * 7 5 4 29 29 H 1.08994 * 110.41588 * 158.26208 * 7 5 4 30 30 H 1.00894 * 111.00403 * 280.38392 * 10 8 2 31 31 H 1.08992 * 109.47223 * 60.00411 * 11 10 8 32 32 H 1.08997 * 109.46992 * 299.99963 * 11 10 8 33 33 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0678 -0.7747 1.2252 5 7 3.2713 -1.4845 0.7206 6 6 3.6106 -2.6242 1.5830 7 6 2.8823 -1.9422 -0.6381 8 6 2.0658 -0.7704 -1.2244 9 1 2.7066 -0.1262 -1.8263 10 7 0.9512 -1.2805 -2.0340 11 6 1.3703 -1.5069 -3.4236 12 6 0.2032 -2.0281 -4.2217 13 1 -0.7555 -2.1722 -3.7455 14 6 0.3574 -2.3152 -5.5615 15 7 1.5233 -2.1347 -6.1427 16 14 -1.0892 -2.9620 -6.5507 17 1 -2.2795 -3.0761 -5.6702 18 1 -1.3857 -2.0253 -7.6642 19 1 -0.7525 -4.2983 -7.1041 20 1 -0.3634 -1.0269 0.0391 21 1 -0.3633 0.5473 0.8698 22 1 -0.3633 0.4796 -0.9089 23 1 1.3255 -1.4897 1.5798 24 1 2.3405 -0.0839 2.0231 25 1 4.4448 -3.1741 1.1472 26 1 3.8917 -2.2609 2.5715 27 1 2.7470 -3.2835 1.6703 28 1 2.2673 -2.8400 -0.5752 29 1 3.7684 -2.1291 -1.2446 30 1 0.5666 -2.1216 -1.6307 31 1 2.1800 -2.2363 -3.4447 32 1 1.7157 -0.5681 -3.8565 33 1 1.6318 -2.3370 -7.0851 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306386615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = 2.002097 kcal Electronic energy + Delta-G solvation = -12990.913322 eV Core-core repulsion = 10858.224833 eV Total energy + Delta-G solvation = -2132.688489 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.09721 -34.82383 -32.89279 -31.64957 -28.52795 -26.84252 -25.56647 -23.71371 -21.70117 -21.00624 -19.00362 -16.54032 -15.81775 -15.08542 -14.71293 -14.36032 -13.94141 -13.23695 -13.05361 -12.81856 -12.15372 -12.11653 -11.94648 -11.44053 -11.24504 -11.16346 -10.80127 -10.73868 -10.55813 -10.31170 -10.06570 -9.85112 -9.13782 -8.49897 -8.38531 -7.26226 -6.03330 -4.05276 3.30514 3.37858 3.42714 4.20462 4.43601 4.89685 5.00509 5.24577 5.32630 5.37250 5.49821 5.55648 5.69283 5.80243 5.84031 5.86866 5.98586 6.05946 6.18319 6.42022 6.45667 6.65596 6.84875 6.99900 7.15354 7.29318 7.44014 7.79400 8.13534 8.38498 8.61290 9.04459 9.59751 11.07708 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053155 B = 0.007872 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.631716 B = 3555.843360 C = 3799.192835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.089 4.089 3 H 0.073 0.927 4 C 0.034 3.966 5 N -0.517 5.517 6 C 0.015 3.985 7 C 0.007 3.993 8 C 0.086 3.914 9 H 0.081 0.919 10 N -0.675 5.675 11 C 0.192 3.808 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.050 0.950 21 H 0.034 0.966 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.327 0.673 31 H -0.014 1.014 32 H 0.028 0.972 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 0.950 12.885 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.108 4.108 3 H 0.092 0.908 4 C -0.094 4.094 5 N -0.241 5.241 6 C -0.135 4.135 7 C -0.123 4.123 8 C -0.026 4.026 9 H 0.099 0.901 10 N -0.305 5.305 11 C 0.066 3.934 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.069 0.931 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.004 0.996 32 H 0.046 0.954 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.555 1.894 12.554 12.791 hybrid contribution -0.699 -1.837 -0.513 2.032 sum 0.856 0.057 12.041 12.071 Atomic orbital electron populations 1.21487 0.93797 1.01526 1.00940 1.21981 0.96665 0.98871 0.93303 0.90835 1.23295 0.90932 0.97327 0.97823 1.65319 1.33412 1.22714 1.02657 1.22482 1.00295 0.92949 0.97725 1.23974 1.00065 0.98035 0.90249 1.22303 0.91646 0.94721 0.93903 0.90095 1.60860 1.29427 1.35860 1.04318 1.19597 0.95254 0.95848 0.82712 1.21232 0.96934 1.42846 0.94243 0.91979 1.24993 0.95936 0.95836 0.97824 1.69974 1.23048 1.49038 1.11608 0.86446 0.82586 0.78387 0.80012 1.19692 1.20985 1.21129 0.93084 0.94684 0.90914 0.94011 0.90815 0.91559 0.91658 0.95600 0.93852 0.90435 0.85513 0.99573 0.95391 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.12 37.16 0.30 -1.48 16 2 C -0.09 -1.35 3.67 -89.11 -0.33 -1.67 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.47 6.04 -2.06 -0.01 0.46 16 5 N -0.52 -7.67 5.66 -238.08 -1.35 -9.01 16 6 C 0.01 0.18 9.53 60.06 0.57 0.75 16 7 C 0.01 0.11 6.14 -2.18 -0.01 0.10 16 8 C 0.09 1.56 3.35 -66.32 -0.22 1.34 16 9 H 0.08 1.58 7.84 -51.93 -0.41 1.17 16 10 N -0.68 -14.19 4.54 -106.53 -0.48 -14.68 16 11 C 0.19 5.01 5.28 -4.98 -0.03 4.98 16 12 C -0.51 -14.53 9.32 -34.44 -0.32 -14.85 16 13 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 16 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H 0.05 0.78 7.48 -51.93 -0.39 0.39 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 23 H 0.04 0.56 7.60 -51.93 -0.39 0.17 16 24 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 28 H 0.04 0.74 7.40 -51.93 -0.38 0.36 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.33 6.70 7.66 -39.30 -0.30 6.40 16 31 H -0.01 -0.37 8.14 -51.93 -0.42 -0.80 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 266.22 15.07 4.01 4.01 Total: -1.00 -29.21 266.22 -7.87 -37.08 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.62 Total: 0.93 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.14 Total: -8.88 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -1.09 Total: -49.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.21 -7.87 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306386615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.083 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds