Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.78340 * 2 1 4 4 C 1.54939 * 110.72628 * 123.24840 * 2 1 3 5 5 N 1.48533 * 103.22575 * 155.77088 * 4 2 1 6 6 C 1.46896 * 110.99873 * 200.28233 * 5 4 2 7 7 C 1.47901 * 105.82259 * 320.79895 * 5 4 2 8 8 C 1.53994 * 107.06026 * 25.32594 * 7 5 4 9 9 H 1.08995 * 110.31153 * 239.76150 * 8 7 5 10 10 N 1.46902 * 110.30746 * 117.68940 * 8 7 5 11 11 C 1.46906 * 110.99573 * 86.45693 * 10 8 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99734 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00116 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99947 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00011 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47179 * 90.00277 * 16 14 12 18 18 H 1.48507 * 109.47135 * 209.99685 * 16 14 12 19 19 H 1.48494 * 109.47644 * 330.00010 * 16 14 12 20 20 H 1.09001 * 109.47433 * 183.24598 * 1 2 3 21 21 H 1.09002 * 109.47371 * 303.24577 * 1 2 3 22 22 H 1.09006 * 109.47495 * 63.24374 * 1 2 3 23 23 H 1.08999 * 110.66421 * 37.33970 * 4 2 1 24 24 H 1.08994 * 110.80912 * 274.27612 * 4 2 1 25 25 H 1.09001 * 109.47079 * 177.40147 * 6 5 4 26 26 H 1.09005 * 109.47356 * 297.39517 * 6 5 4 27 27 H 1.08993 * 109.47205 * 57.39781 * 6 5 4 28 28 H 1.09004 * 109.91314 * 265.97602 * 7 5 4 29 29 H 1.08994 * 109.91676 * 144.68357 * 7 5 4 30 30 H 1.00896 * 111.00219 * 210.41332 * 10 8 7 31 31 H 1.09002 * 109.46991 * 299.99841 * 11 10 8 32 32 H 1.09000 * 109.47202 * 60.00133 * 11 10 8 33 33 H 0.96998 * 120.00296 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0783 -0.7945 1.2119 5 7 3.4318 -1.2092 0.7621 6 6 3.9211 -2.3497 1.5479 7 6 3.2893 -1.5708 -0.6649 8 6 2.0770 -0.7927 -1.2093 9 1 1.3215 -1.4832 -1.5840 10 7 2.4981 0.1278 -2.2739 11 6 2.5180 -0.5491 -3.5776 12 6 2.9544 0.4241 -4.6422 13 1 3.1934 1.4434 -4.3769 14 6 3.0484 0.0133 -5.9550 15 7 2.7578 -1.2280 -6.2780 16 14 3.5886 1.2198 -7.2748 17 1 5.0663 1.1723 -7.4141 18 1 2.9575 0.8538 -8.5683 19 1 3.1715 2.5925 -6.8914 20 1 -0.3634 -1.0260 0.0582 21 1 -0.3634 0.5634 0.8595 22 1 -0.3634 0.4627 -0.9177 23 1 1.4560 -1.6664 1.4136 24 1 2.1442 -0.1581 2.0943 25 1 4.8937 -2.6622 1.1678 26 1 4.0169 -2.0564 2.5934 27 1 3.2161 -3.1768 1.4657 28 1 3.1161 -2.6427 -0.7608 29 1 4.1886 -1.2869 -1.2114 30 1 1.9073 0.9452 -2.2998 31 1 3.2162 -1.3854 -3.5421 32 1 1.5195 -0.9190 -3.8102 33 1 2.8243 -1.5171 -7.2015 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306386616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = -1.726856 kcal Electronic energy + Delta-G solvation = -12890.246032 eV Core-core repulsion = 10757.395844 eV Total energy + Delta-G solvation = -2132.850189 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.99096 -34.80548 -32.96798 -31.79699 -28.49738 -26.83942 -25.91162 -23.53650 -21.82602 -20.29512 -19.60927 -16.51586 -15.77930 -15.10581 -14.63443 -14.32110 -13.81796 -13.50806 -13.22057 -12.68498 -12.37518 -12.17042 -11.88879 -11.55949 -11.26443 -11.10008 -10.82818 -10.77297 -10.57846 -10.49590 -10.22461 -9.76274 -9.13389 -8.46770 -8.18608 -7.27279 -6.01560 -4.03309 3.33878 3.39410 3.43441 4.26439 4.44666 4.84110 4.97045 5.06335 5.34438 5.41934 5.47542 5.52087 5.67538 5.71869 5.75996 5.79596 5.92979 6.03007 6.15157 6.19308 6.35845 6.51381 6.60878 7.12976 7.26176 7.30545 7.43744 7.82207 8.16017 8.43129 8.64754 9.06417 9.61664 11.09622 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051621 B = 0.007632 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.289749 B = 3667.954799 C = 3922.750530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.091 0.909 4 C 0.041 3.959 5 N -0.519 5.519 6 C 0.017 3.983 7 C 0.047 3.953 8 C 0.082 3.918 9 H 0.040 0.960 10 N -0.677 5.677 11 C 0.193 3.807 12 C -0.513 4.513 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.330 0.670 31 H 0.027 0.973 32 H -0.015 1.015 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 -0.540 13.119 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.087 4.087 5 N -0.243 5.243 6 C -0.132 4.132 7 C -0.082 4.082 8 C -0.030 4.030 9 H 0.058 0.942 10 N -0.309 5.309 11 C 0.067 3.933 12 C -0.552 4.552 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.045 0.955 32 H 0.003 0.997 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.617 -0.360 13.136 13.240 hybrid contribution -1.190 -0.376 -1.114 1.672 sum -2.807 -0.736 12.022 12.368 Atomic orbital electron populations 1.21782 0.94953 1.01515 1.01805 1.22272 0.94793 1.00570 0.94209 0.89102 1.23241 0.89346 0.98217 0.97925 1.64737 1.23129 1.33262 1.03174 1.22497 1.00255 0.91980 0.98478 1.22991 1.00676 0.96586 0.87912 1.22341 0.94029 0.94391 0.92234 0.94170 1.60753 1.56152 1.08156 1.05793 1.19599 0.95139 0.94750 0.83835 1.21203 1.44936 0.97453 0.91584 0.91917 1.24993 0.95550 0.95347 0.98720 1.69965 1.49250 1.16147 1.18490 0.86480 0.78773 0.81238 0.80794 1.20606 1.21345 1.19839 0.92994 0.92691 0.92247 0.94214 0.90540 0.91417 0.91748 0.95855 0.94695 0.88810 0.85258 0.95471 0.99731 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.16 37.15 0.34 -1.47 16 2 C -0.10 -1.47 3.11 -88.76 -0.28 -1.75 16 3 H 0.09 1.41 8.00 -51.93 -0.42 1.00 16 4 C 0.04 0.56 6.00 -1.90 -0.01 0.55 16 5 N -0.52 -8.06 5.55 -238.72 -1.33 -9.39 16 6 C 0.02 0.21 9.40 60.06 0.56 0.78 16 7 C 0.05 0.83 6.40 -2.75 -0.02 0.81 16 8 C 0.08 1.50 2.89 -66.35 -0.19 1.31 16 9 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 10 N -0.68 -14.84 6.16 -106.55 -0.66 -15.50 16 11 C 0.19 5.14 5.28 -4.97 -0.03 5.11 16 12 C -0.51 -14.74 9.32 -34.44 -0.32 -15.06 16 13 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 16 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.51 7.84 -51.93 -0.41 0.10 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.28 8.00 -51.93 -0.42 -0.14 16 28 H 0.03 0.60 7.73 -51.93 -0.40 0.20 16 29 H 0.09 1.90 7.92 -51.93 -0.41 1.49 16 30 H 0.33 6.91 8.39 -39.29 -0.33 6.58 16 31 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 32 H -0.02 -0.42 8.07 -51.93 -0.42 -0.84 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 269.44 15.07 4.06 4.06 Total: -1.00 -30.09 269.44 -7.94 -38.03 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.69 Total: 0.52 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.04 Total: -8.22 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -1.25 Total: -51.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.09 -7.94 -38.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306386616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.299 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds