Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.78340 * 2 1 4 4 C 1.54939 * 110.72628 * 123.24840 * 2 1 3 5 5 N 1.48533 * 103.22575 * 155.77088 * 4 2 1 6 6 C 1.46896 * 110.99873 * 200.28233 * 5 4 2 7 7 C 1.47901 * 105.82259 * 320.79895 * 5 4 2 8 8 C 1.53994 * 107.06026 * 25.32594 * 7 5 4 9 9 H 1.08995 * 110.31153 * 239.76150 * 8 7 5 10 10 N 1.46902 * 110.30746 * 117.68940 * 8 7 5 11 11 C 1.46906 * 110.99573 * 86.45693 * 10 8 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99734 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00116 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99947 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00011 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47179 * 90.00277 * 16 14 12 18 18 H 1.48507 * 109.47135 * 209.99685 * 16 14 12 19 19 H 1.48494 * 109.47644 * 330.00010 * 16 14 12 20 20 H 1.09001 * 109.47433 * 183.24598 * 1 2 3 21 21 H 1.09002 * 109.47371 * 303.24577 * 1 2 3 22 22 H 1.09006 * 109.47495 * 63.24374 * 1 2 3 23 23 H 1.08999 * 110.66421 * 37.33970 * 4 2 1 24 24 H 1.08994 * 110.80912 * 274.27612 * 4 2 1 25 25 H 1.09001 * 109.47079 * 177.40147 * 6 5 4 26 26 H 1.09005 * 109.47356 * 297.39517 * 6 5 4 27 27 H 1.08993 * 109.47205 * 57.39781 * 6 5 4 28 28 H 1.09004 * 109.91314 * 265.97602 * 7 5 4 29 29 H 1.08994 * 109.91676 * 144.68357 * 7 5 4 30 30 H 1.00896 * 111.00219 * 210.41332 * 10 8 7 31 31 H 1.09002 * 109.46991 * 299.99841 * 11 10 8 32 32 H 1.09000 * 109.47202 * 60.00133 * 11 10 8 33 33 H 0.96998 * 120.00296 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0783 -0.7945 1.2119 5 7 3.4318 -1.2092 0.7621 6 6 3.9211 -2.3497 1.5479 7 6 3.2893 -1.5708 -0.6649 8 6 2.0770 -0.7927 -1.2093 9 1 1.3215 -1.4832 -1.5840 10 7 2.4981 0.1278 -2.2739 11 6 2.5180 -0.5491 -3.5776 12 6 2.9544 0.4241 -4.6422 13 1 3.1934 1.4434 -4.3769 14 6 3.0484 0.0133 -5.9550 15 7 2.7578 -1.2280 -6.2780 16 14 3.5886 1.2198 -7.2748 17 1 5.0663 1.1723 -7.4141 18 1 2.9575 0.8538 -8.5683 19 1 3.1715 2.5925 -6.8914 20 1 -0.3634 -1.0260 0.0582 21 1 -0.3634 0.5634 0.8595 22 1 -0.3634 0.4627 -0.9177 23 1 1.4560 -1.6664 1.4136 24 1 2.1442 -0.1581 2.0943 25 1 4.8937 -2.6622 1.1678 26 1 4.0169 -2.0564 2.5934 27 1 3.2161 -3.1768 1.4657 28 1 3.1161 -2.6427 -0.7608 29 1 4.1886 -1.2869 -1.2114 30 1 1.9073 0.9452 -2.2998 31 1 3.2162 -1.3854 -3.5421 32 1 1.5195 -0.9190 -3.8102 33 1 2.8243 -1.5171 -7.2015 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306386616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = -24.250287 kcal Electronic energy + Delta-G solvation = -12891.222722 eV Core-core repulsion = 10757.395844 eV Total energy + Delta-G solvation = -2133.826878 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.30824 -36.53728 -34.70945 -33.43453 -30.07514 -28.19705 -27.53103 -25.00375 -23.63021 -21.64711 -21.03574 -18.58713 -17.28684 -16.68504 -16.35531 -15.62218 -15.24937 -15.10728 -14.67066 -14.13243 -13.89279 -13.53556 -13.36157 -13.06685 -12.91918 -12.64524 -12.45234 -12.26531 -12.18324 -11.91145 -11.67307 -11.48873 -11.18005 -10.67481 -9.39521 -9.13458 -8.23531 -6.34948 1.40787 1.43003 1.54226 2.39648 3.08689 3.09962 3.48355 3.64023 3.73235 4.22537 4.27471 4.37842 4.50752 4.58015 4.59309 4.69457 4.81339 4.86696 4.95731 4.99028 5.06976 5.15516 5.23011 5.26400 5.35552 5.62238 5.88417 6.03528 6.12790 6.45780 6.72956 6.88656 7.36258 8.88216 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051621 B = 0.007632 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.289749 B = 3667.954799 C = 3922.750530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.086 0.914 4 C 0.046 3.954 5 N -0.533 5.533 6 C 0.016 3.984 7 C 0.052 3.948 8 C 0.075 3.925 9 H 0.027 0.973 10 N -0.676 5.676 11 C 0.212 3.788 12 C -0.537 4.537 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.975 3.025 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.262 1.262 20 H 0.055 0.945 21 H 0.082 0.918 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.336 0.664 31 H -0.003 1.003 32 H -0.041 1.041 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 0.457 14.272 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.257 5.257 6 C -0.133 4.133 7 C -0.077 4.077 8 C -0.036 4.036 9 H 0.045 0.955 10 N -0.307 5.307 11 C 0.084 3.916 12 C -0.575 4.575 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.799 3.201 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.186 1.186 20 H 0.074 0.926 21 H 0.101 0.899 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.015 0.985 32 H -0.024 1.024 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.849 0.641 14.322 14.455 hybrid contribution -1.116 -0.731 -1.406 1.938 sum -2.965 -0.090 12.916 13.252 Atomic orbital electron populations 1.21751 0.93094 1.02187 1.02507 1.22244 0.96281 0.99774 0.92793 0.89607 1.23309 0.88276 0.98805 0.97782 1.64706 1.24549 1.34650 1.01793 1.22574 1.00165 0.91323 0.99194 1.22781 0.98764 0.96436 0.89711 1.22473 0.94284 0.94311 0.92560 0.95463 1.60636 1.56870 1.08719 1.04489 1.19206 0.92625 0.93797 0.85995 1.21560 1.45436 0.97848 0.92637 0.91722 1.25973 0.95221 0.97287 1.01255 1.70095 1.49929 1.18177 1.19300 0.85308 0.78425 0.78955 0.77455 1.19907 1.20578 1.18626 0.92616 0.89877 0.93397 0.92892 0.88148 0.91654 0.89368 0.95146 0.94626 0.92040 0.84617 0.98466 1.02372 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.16 71.98 0.66 -2.55 16 2 C -0.09 -2.59 3.11 -9.59 -0.03 -2.62 16 3 H 0.09 2.53 8.00 -2.38 -0.02 2.51 16 4 C 0.05 1.12 6.00 86.65 0.52 1.64 16 5 N -0.53 -15.76 5.55 -909.18 -5.05 -20.81 16 6 C 0.02 0.36 9.40 127.69 1.20 1.56 16 7 C 0.05 1.88 6.40 86.45 0.55 2.43 16 8 C 0.07 2.79 2.89 45.79 0.13 2.92 16 9 H 0.03 1.09 7.57 -2.39 -0.02 1.08 16 10 N -0.68 -30.40 6.16 -491.02 -3.02 -33.42 16 11 C 0.21 11.72 5.28 85.56 0.45 12.17 16 12 C -0.54 -31.40 9.32 25.60 0.24 -31.16 16 13 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 16 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 20 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.05 1.18 7.84 -2.39 -0.02 1.16 16 24 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.03 0.66 8.00 -2.39 -0.02 0.64 16 28 H 0.04 1.25 7.73 -2.38 -0.02 1.23 16 29 H 0.06 2.61 7.92 -2.39 -0.02 2.59 16 30 H 0.34 14.26 8.39 -89.70 -0.75 13.51 16 31 H 0.00 -0.17 8.11 -2.39 -0.02 -0.19 16 32 H -0.04 -2.45 8.07 -2.39 -0.02 -2.47 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -65.27 269.44 -1.27 -66.53 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.31 Total: 12.98 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.19 Total: -15.09 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -7.79 Total: -111.42 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.27 -1.27 -66.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306386616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.282 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds