Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.28345 * 2 1 4 4 C 1.54379 * 110.32491 * 237.76126 * 2 1 3 5 5 N 1.48550 * 104.59636 * 264.95723 * 4 2 1 6 6 C 1.46902 * 111.00170 * 200.96122 * 5 4 2 7 7 C 1.48561 * 104.22431 * 320.52105 * 5 4 2 8 8 C 1.54256 * 110.31959 * 122.12438 * 2 1 3 9 9 H 1.09003 * 110.32702 * 359.89974 * 8 2 1 10 10 N 1.46901 * 110.32354 * 237.79210 * 8 2 1 11 11 C 1.46905 * 110.99870 * 155.00203 * 10 8 2 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00103 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99826 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46586 * 90.00817 * 16 14 12 18 18 H 1.48496 * 109.47489 * 210.00373 * 16 14 12 19 19 H 1.48495 * 109.47395 * 330.00672 * 16 14 12 20 20 H 1.08997 * 109.47449 * 297.87857 * 1 2 3 21 21 H 1.09009 * 109.46986 * 57.87523 * 1 2 3 22 22 H 1.08999 * 109.46783 * 177.86814 * 1 2 3 23 23 H 1.08998 * 110.41289 * 23.74025 * 4 2 1 24 24 H 1.09000 * 110.40860 * 146.05653 * 4 2 1 25 25 H 1.09003 * 109.47129 * 59.87410 * 6 5 4 26 26 H 1.09005 * 109.47056 * 179.87484 * 6 5 4 27 27 H 1.09002 * 109.47111 * 299.87637 * 6 5 4 28 28 H 1.09001 * 110.41182 * 280.70282 * 7 5 4 29 29 H 1.09001 * 110.41388 * 158.26558 * 7 5 4 30 30 H 1.00901 * 111.00067 * 278.95378 * 10 8 2 31 31 H 1.09001 * 109.46798 * 300.00327 * 11 10 8 32 32 H 1.08998 * 109.46961 * 60.00043 * 11 10 8 33 33 H 0.96997 * 120.00392 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7723 -1.2245 5 7 2.3148 -2.1473 -0.7204 6 6 3.2650 -2.8609 -1.5840 7 6 2.8806 -1.9415 0.6377 8 6 2.0657 -0.7692 1.2251 9 1 1.2387 -1.1453 1.8274 10 7 2.9314 0.0991 2.0342 11 6 2.9708 -0.3519 3.4318 12 6 3.8660 0.5612 4.2292 13 1 4.3563 1.3935 3.7462 14 6 4.0583 0.3348 5.5756 15 7 3.4608 -0.6784 6.1638 16 14 5.1685 1.4662 6.5638 17 1 4.3658 2.5849 7.1202 18 1 5.7903 0.7026 7.6753 19 1 6.2318 2.0106 5.6817 20 1 -0.3634 0.4805 0.9084 21 1 -0.3633 0.5465 -0.8704 22 1 -0.3633 -1.0270 -0.0382 23 1 1.3214 -0.7878 -2.0201 24 1 2.9930 -0.3229 -1.5813 25 1 4.2108 -2.3196 -1.6088 26 1 3.4307 -3.8640 -1.1909 27 1 2.8587 -2.9287 -2.5932 28 1 3.9359 -1.6765 0.5738 29 1 2.7490 -2.8376 1.2442 30 1 3.8606 0.1482 1.6438 31 1 1.9642 -0.3289 3.8494 32 1 3.3586 -1.3696 3.4744 33 1 3.5963 -0.8380 7.1109 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306386617.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = -2.474910 kcal Electronic energy + Delta-G solvation = -12899.615511 eV Core-core repulsion = 10766.732884 eV Total energy + Delta-G solvation = -2132.882627 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.07302 -34.75604 -32.90594 -31.88383 -28.45708 -26.70897 -25.93248 -23.63234 -21.53998 -20.81323 -19.53556 -16.47920 -15.54350 -15.42897 -14.70010 -14.26733 -13.55389 -13.43057 -13.14655 -12.70187 -12.46293 -12.25495 -11.94823 -11.43925 -11.25734 -11.10398 -10.94732 -10.69261 -10.50713 -10.40378 -10.25864 -9.84802 -9.15408 -8.49357 -8.37832 -7.28291 -6.03139 -4.05288 3.32129 3.37805 3.41417 4.21235 4.43668 4.89116 4.99078 5.17036 5.32639 5.36338 5.49828 5.55524 5.70050 5.71249 5.78604 5.86416 5.93636 6.06984 6.18348 6.35508 6.41533 6.48756 6.63074 6.98455 7.13801 7.29758 7.43285 7.79168 8.13419 8.38312 8.61317 9.03982 9.59640 11.07887 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052874 B = 0.007523 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.431435 B = 3721.067705 C = 3915.765253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.085 0.915 4 C 0.035 3.965 5 N -0.515 5.515 6 C 0.014 3.986 7 C 0.006 3.994 8 C 0.089 3.911 9 H 0.082 0.918 10 N -0.681 5.681 11 C 0.194 3.806 12 C -0.516 4.516 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.056 0.944 21 H 0.047 0.953 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.327 0.673 31 H 0.028 0.972 32 H -0.013 1.013 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 -1.642 -13.003 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.103 0.897 4 C -0.094 4.094 5 N -0.239 5.239 6 C -0.135 4.135 7 C -0.124 4.124 8 C -0.023 4.023 9 H 0.100 0.900 10 N -0.310 5.310 11 C 0.067 3.933 12 C -0.554 4.554 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.144 0.856 31 H 0.046 0.954 32 H 0.005 0.995 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.071 -1.589 -12.682 13.145 hybrid contribution 1.986 0.088 0.524 2.056 sum -1.085 -1.502 -12.158 12.299 Atomic orbital electron populations 1.21745 0.94728 1.01590 1.01175 1.21970 0.96006 0.99661 0.93332 0.89699 1.23216 0.99545 0.88750 0.97844 1.65332 1.40539 1.15434 1.02564 1.22491 0.94149 0.99191 0.97674 1.23986 0.97214 1.00859 0.90332 1.22380 0.96384 0.89823 0.93760 0.89951 1.60810 1.14716 1.50885 1.04611 1.19587 0.97369 0.93943 0.82369 1.21197 1.27813 1.12708 0.93708 0.92029 1.24989 0.96228 0.95524 0.97812 1.69960 1.43551 1.28991 1.11166 0.86487 0.80674 0.80563 0.79604 1.20584 1.21298 1.19899 0.92444 0.93391 0.92524 0.90584 0.94248 0.95592 0.91529 0.91699 0.93815 0.90425 0.85552 0.95364 0.99528 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.90 37.16 0.33 -1.52 16 2 C -0.09 -1.38 3.44 -89.24 -0.31 -1.68 16 3 H 0.08 1.35 7.95 -51.93 -0.41 0.94 16 4 C 0.03 0.47 6.04 -2.19 -0.01 0.46 16 5 N -0.51 -7.55 5.66 -238.23 -1.35 -8.90 16 6 C 0.01 0.17 9.53 60.07 0.57 0.74 16 7 C 0.01 0.10 6.16 -2.18 -0.01 0.08 16 8 C 0.09 1.61 3.03 -66.33 -0.20 1.41 16 9 H 0.08 1.62 7.38 -51.93 -0.38 1.24 16 10 N -0.68 -14.68 6.21 -106.53 -0.66 -15.34 16 11 C 0.19 5.11 5.29 -4.97 -0.03 5.08 16 12 C -0.52 -14.72 9.32 -34.44 -0.32 -15.04 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 16 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 24 H 0.04 0.52 7.97 -51.93 -0.41 0.11 16 25 H 0.03 0.31 7.98 -51.93 -0.41 -0.10 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.74 7.31 -51.93 -0.38 0.36 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.33 6.81 8.08 -39.29 -0.32 6.49 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H -0.01 -0.36 8.14 -51.93 -0.42 -0.79 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 268.90 15.07 4.05 4.05 Total: -1.00 -29.54 268.90 -7.97 -37.51 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.65 Total: 1.08 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.08 Total: -8.95 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -1.27 Total: -50.48 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.54 -7.97 -37.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306386617.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.039 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds