Wall clock time and date at job start Mon Mar 30 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.63673 * 2 1 4 4 C 1.54931 * 110.72461 * 236.65997 * 2 1 3 5 5 N 1.48532 * 103.22692 * 204.22450 * 4 2 1 6 6 C 1.46902 * 111.00172 * 159.71940 * 5 4 2 7 7 C 1.47906 * 105.82078 * 39.20301 * 5 4 2 8 8 C 1.53989 * 107.05746 * 334.67285 * 7 5 4 9 9 H 1.08998 * 110.31133 * 120.23758 * 8 7 5 10 10 N 1.46498 * 110.31047 * 242.30851 * 8 7 5 11 11 C 1.46501 * 120.00189 * 58.54356 * 10 8 7 12 12 C 1.36934 * 120.00090 * 238.54729 * 10 8 7 13 13 H 1.08006 * 120.00353 * 23.17612 * 12 10 8 14 14 C 1.38820 * 120.00018 * 203.17106 * 12 10 8 15 15 N 1.31612 * 119.99805 * 13.48944 * 14 12 10 16 16 Si 1.86797 * 119.99832 * 193.48600 * 14 12 10 17 17 H 1.48500 * 109.47314 * 60.00559 * 16 14 12 18 18 H 1.48507 * 109.47083 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47491 * 300.00390 * 16 14 12 20 20 H 1.09001 * 109.47232 * 296.84283 * 1 2 3 21 21 H 1.09000 * 109.47552 * 56.84745 * 1 2 3 22 22 H 1.09001 * 109.46614 * 176.84471 * 1 2 3 23 23 H 1.09001 * 110.67197 * 85.78899 * 4 2 1 24 24 H 1.09001 * 110.66756 * 322.65674 * 4 2 1 25 25 H 1.09002 * 109.46870 * 302.59922 * 6 5 4 26 26 H 1.08995 * 109.46890 * 62.60149 * 6 5 4 27 27 H 1.09000 * 109.47135 * 182.60768 * 6 5 4 28 28 H 1.08998 * 109.91504 * 94.02122 * 7 5 4 29 29 H 1.08994 * 109.91820 * 215.31985 * 7 5 4 30 30 H 1.09001 * 109.47304 * 95.15331 * 11 10 8 31 31 H 1.09004 * 109.47339 * 215.15774 * 11 10 8 32 32 H 1.09008 * 109.46769 * 335.15619 * 11 10 8 33 33 H 0.96998 * 120.00143 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0783 -0.7964 -1.2106 5 7 3.4318 -1.2103 -0.7602 6 6 3.9213 -2.3521 -1.5442 7 6 3.2894 -1.5696 0.6674 8 6 2.0772 -0.7907 1.2105 9 1 1.3216 -1.4806 1.5863 10 7 2.4971 0.1289 2.2707 11 6 3.5000 1.1597 1.9916 12 6 1.9522 0.0251 3.5227 13 1 1.5224 -0.9106 3.8488 14 6 1.9523 1.1224 4.3729 15 7 2.2255 2.3204 3.9012 16 14 1.5646 0.8988 6.1865 17 1 2.5551 -0.0258 6.7941 18 1 1.6291 2.2144 6.8724 19 1 0.2008 0.3301 6.3348 20 1 -0.3634 0.4640 0.9169 21 1 -0.3634 0.5620 -0.8604 22 1 -0.3632 -1.0261 -0.0566 23 1 2.1444 -0.1591 -2.0924 24 1 1.4561 -1.6687 -1.4109 25 1 3.2162 -3.1792 -1.4606 26 1 4.0168 -2.0604 -2.5901 27 1 4.8938 -2.6640 -1.1636 28 1 3.1162 -2.6413 0.7651 29 1 4.1887 -1.2848 1.2135 30 1 2.9997 2.0949 1.7401 31 1 4.1245 1.3072 2.8728 32 1 4.1222 0.8438 1.1541 33 1 2.2252 3.0872 4.4952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306399426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:48 Heat of formation + Delta-G solvation = 27.705115 kcal Electronic energy + Delta-G solvation = -13466.977957 eV Core-core repulsion = 11335.404034 eV Total energy + Delta-G solvation = -2131.573923 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.74447 -34.89462 -32.53114 -30.79944 -28.00753 -26.50190 -25.80520 -24.04481 -21.87378 -20.35816 -18.74051 -16.77666 -15.61137 -14.85837 -14.46247 -14.01215 -13.61865 -13.08923 -12.72551 -12.46318 -12.01655 -11.92107 -11.58219 -11.34037 -10.95766 -10.80710 -10.65651 -10.36008 -10.24115 -10.16545 -10.00143 -9.78735 -9.65880 -8.46831 -8.00550 -6.65018 -5.65054 -3.11260 3.41880 3.47425 3.48370 4.47105 4.55253 5.21623 5.30097 5.46249 5.52347 5.66580 5.71249 5.80124 5.94651 5.98846 6.01960 6.11822 6.20363 6.35271 6.45175 6.62228 6.79700 6.91374 6.98280 7.07169 7.40785 7.46970 7.50491 7.84111 7.89363 8.47460 9.31351 9.95348 10.46137 11.38945 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051273 B = 0.010244 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.964491 B = 2732.595971 C = 2875.351682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.039 3.961 5 N -0.522 5.522 6 C 0.019 3.981 7 C 0.019 3.981 8 C 0.175 3.825 9 H 0.066 0.934 10 N -0.588 5.588 11 C 0.162 3.838 12 C -0.256 4.256 13 H 0.065 0.935 14 C 0.003 3.997 15 N -0.905 5.905 16 Si 0.903 3.097 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.284 1.284 20 H 0.064 0.936 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.010 0.990 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -6.329 -8.435 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.104 0.896 4 C -0.089 4.089 5 N -0.246 5.246 6 C -0.130 4.130 7 C -0.111 4.111 8 C 0.065 3.935 9 H 0.084 0.916 10 N -0.309 5.309 11 C 0.018 3.982 12 C -0.386 4.386 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.549 5.549 16 Si 0.733 3.267 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.211 1.211 20 H 0.083 0.917 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.029 0.971 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.466 -5.731 -8.382 10.165 hybrid contribution -0.754 -0.740 1.052 1.491 sum -0.288 -6.471 -7.330 9.782 Atomic orbital electron populations 1.21638 0.95324 1.00399 1.01613 1.22662 0.95112 1.00950 0.94724 0.89640 1.23267 0.88984 0.98142 0.98506 1.64690 1.23705 1.32833 1.03325 1.22473 0.99899 0.92185 0.98488 1.23607 1.01939 0.97404 0.88149 1.21215 0.92457 0.91480 0.88303 0.91616 1.43939 1.44576 1.35769 1.06645 1.20723 0.90090 0.91005 0.96401 1.19164 1.34716 0.95034 0.89664 0.91694 1.25001 1.00953 0.94954 0.98652 1.70070 1.53510 0.97712 1.33653 0.86372 0.78204 0.76655 0.85501 1.21166 1.21681 1.21055 0.91715 0.93827 0.93821 0.91158 0.94539 0.96045 0.91991 0.91841 0.94991 0.89912 0.95352 0.94589 0.97133 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.16 37.16 0.34 -1.93 16 2 C -0.11 -2.15 3.24 -88.76 -0.29 -2.44 16 3 H 0.09 1.84 7.03 -51.93 -0.36 1.48 16 4 C 0.04 0.63 6.00 -1.90 -0.01 0.62 16 5 N -0.52 -8.89 5.55 -238.72 -1.33 -10.22 16 6 C 0.02 0.25 9.40 60.07 0.56 0.82 16 7 C 0.02 0.35 5.82 -2.75 -0.02 0.34 16 8 C 0.18 3.71 3.05 -66.58 -0.20 3.51 16 9 H 0.07 1.40 7.63 -51.93 -0.40 1.01 16 10 N -0.59 -14.98 2.83 -171.93 -0.49 -15.47 16 11 C 0.16 4.13 7.47 59.85 0.45 4.58 16 12 C -0.26 -7.11 9.59 -15.06 -0.14 -7.25 16 13 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 14 C 0.00 0.08 5.09 -17.43 -0.09 -0.01 16 15 N -0.90 -26.71 10.75 55.49 0.60 -26.11 16 16 Si 0.90 22.09 29.57 -169.99 -5.03 17.07 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.55 7.84 -51.93 -0.41 0.14 16 25 H 0.02 0.27 8.00 -51.93 -0.42 -0.14 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.56 7.73 -51.93 -0.40 0.15 16 29 H 0.08 1.70 7.09 -51.93 -0.37 1.34 16 30 H 0.03 0.78 7.25 -51.93 -0.38 0.40 16 31 H 0.04 0.98 7.37 -51.93 -0.38 0.59 16 32 H 0.01 0.24 6.96 -51.92 -0.36 -0.12 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 260.70 15.07 3.93 3.93 Total: -1.00 -29.26 260.70 -7.27 -36.53 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.55 Total: -3.96 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.60 Total: -1.76 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -1.22 Total: -51.80 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.26 -7.27 -36.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306399426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.231 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds