Wall clock time and date at job start Mon Mar 30 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.63673 * 2 1 4 4 C 1.54931 * 110.72461 * 236.65997 * 2 1 3 5 5 N 1.48532 * 103.22692 * 204.22450 * 4 2 1 6 6 C 1.46902 * 111.00172 * 159.71940 * 5 4 2 7 7 C 1.47906 * 105.82078 * 39.20301 * 5 4 2 8 8 C 1.53989 * 107.05746 * 334.67285 * 7 5 4 9 9 H 1.08998 * 110.31133 * 120.23758 * 8 7 5 10 10 N 1.46498 * 110.31047 * 242.30851 * 8 7 5 11 11 C 1.46501 * 120.00189 * 58.54356 * 10 8 7 12 12 C 1.36934 * 120.00090 * 238.54729 * 10 8 7 13 13 H 1.08006 * 120.00353 * 23.17612 * 12 10 8 14 14 C 1.38820 * 120.00018 * 203.17106 * 12 10 8 15 15 N 1.31612 * 119.99805 * 13.48944 * 14 12 10 16 16 Si 1.86797 * 119.99832 * 193.48600 * 14 12 10 17 17 H 1.48500 * 109.47314 * 60.00559 * 16 14 12 18 18 H 1.48507 * 109.47083 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47491 * 300.00390 * 16 14 12 20 20 H 1.09001 * 109.47232 * 296.84283 * 1 2 3 21 21 H 1.09000 * 109.47552 * 56.84745 * 1 2 3 22 22 H 1.09001 * 109.46614 * 176.84471 * 1 2 3 23 23 H 1.09001 * 110.67197 * 85.78899 * 4 2 1 24 24 H 1.09001 * 110.66756 * 322.65674 * 4 2 1 25 25 H 1.09002 * 109.46870 * 302.59922 * 6 5 4 26 26 H 1.08995 * 109.46890 * 62.60149 * 6 5 4 27 27 H 1.09000 * 109.47135 * 182.60768 * 6 5 4 28 28 H 1.08998 * 109.91504 * 94.02122 * 7 5 4 29 29 H 1.08994 * 109.91820 * 215.31985 * 7 5 4 30 30 H 1.09001 * 109.47304 * 95.15331 * 11 10 8 31 31 H 1.09004 * 109.47339 * 215.15774 * 11 10 8 32 32 H 1.09008 * 109.46769 * 335.15619 * 11 10 8 33 33 H 0.96998 * 120.00143 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0783 -0.7964 -1.2106 5 7 3.4318 -1.2103 -0.7602 6 6 3.9213 -2.3521 -1.5442 7 6 3.2894 -1.5696 0.6674 8 6 2.0772 -0.7907 1.2105 9 1 1.3216 -1.4806 1.5863 10 7 2.4971 0.1289 2.2707 11 6 3.5000 1.1597 1.9916 12 6 1.9522 0.0251 3.5227 13 1 1.5224 -0.9106 3.8488 14 6 1.9523 1.1224 4.3729 15 7 2.2255 2.3204 3.9012 16 14 1.5646 0.8988 6.1865 17 1 2.5551 -0.0258 6.7941 18 1 1.6291 2.2144 6.8724 19 1 0.2008 0.3301 6.3348 20 1 -0.3634 0.4640 0.9169 21 1 -0.3634 0.5620 -0.8604 22 1 -0.3632 -1.0261 -0.0566 23 1 2.1444 -0.1591 -2.0924 24 1 1.4561 -1.6687 -1.4109 25 1 3.2162 -3.1792 -1.4606 26 1 4.0168 -2.0604 -2.5901 27 1 4.8938 -2.6640 -1.1636 28 1 3.1162 -2.6413 0.7651 29 1 4.1887 -1.2848 1.2135 30 1 2.9997 2.0949 1.7401 31 1 4.1245 1.3072 2.8728 32 1 4.1222 0.8438 1.1541 33 1 2.2252 3.0872 4.4952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306399426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:48 Heat of formation + Delta-G solvation = 8.077099 kcal Electronic energy + Delta-G solvation = -13467.829092 eV Core-core repulsion = 11335.404034 eV Total energy + Delta-G solvation = -2132.425057 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24582 -36.74261 -34.09782 -32.71482 -29.60182 -28.06973 -27.64965 -25.64704 -23.61632 -21.78484 -20.39429 -18.81467 -17.39671 -16.24899 -16.24044 -15.41345 -15.31321 -14.79268 -14.38977 -14.00182 -13.71220 -13.41452 -12.99694 -12.84379 -12.73560 -12.53599 -12.35282 -12.22590 -12.07125 -11.90683 -11.71140 -11.51805 -11.39651 -10.59087 -9.28980 -8.72481 -7.79557 -5.28079 1.46119 1.48854 1.55351 2.51808 3.18849 3.32058 3.62861 3.91443 3.99707 4.26651 4.39317 4.47060 4.62189 4.65046 4.71197 4.80549 4.87727 4.94356 4.98300 5.03082 5.18066 5.24338 5.36498 5.43663 5.51065 5.65490 5.73762 6.01150 6.23548 6.35329 7.17567 7.90592 8.36939 9.23125 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051273 B = 0.010244 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.964491 B = 2732.595971 C = 2875.351682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 H 0.053 0.947 4 C 0.051 3.949 5 N -0.539 5.539 6 C 0.019 3.981 7 C 0.031 3.969 8 C 0.165 3.835 9 H 0.062 0.938 10 N -0.603 5.603 11 C 0.187 3.813 12 C -0.265 4.265 13 H 0.069 0.931 14 C -0.053 4.053 15 N -0.937 5.937 16 Si 0.968 3.032 17 H -0.279 1.279 18 H -0.295 1.295 19 H -0.275 1.275 20 H 0.030 0.970 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.000 1.000 31 H 0.008 0.992 32 H 0.029 0.971 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -8.013 -9.586 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.133 4.133 3 H 0.072 0.928 4 C -0.077 4.077 5 N -0.263 5.263 6 C -0.130 4.130 7 C -0.099 4.099 8 C 0.057 3.943 9 H 0.080 0.920 10 N -0.325 5.325 11 C 0.042 3.958 12 C -0.395 4.395 13 H 0.087 0.913 14 C -0.248 4.248 15 N -0.584 5.584 16 Si 0.796 3.204 17 H -0.206 1.206 18 H -0.221 1.221 19 H -0.201 1.201 20 H 0.049 0.951 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.018 0.982 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.078 -7.457 -9.566 12.130 hybrid contribution -0.629 -0.266 1.334 1.498 sum -0.551 -7.723 -8.232 11.301 Atomic orbital electron populations 1.21567 0.94010 1.01767 1.00914 1.22532 0.96245 0.99251 0.95280 0.92834 1.23210 0.88612 0.98584 0.97288 1.64653 1.24356 1.34812 1.02464 1.22546 1.00216 0.91291 0.98907 1.23309 0.99480 0.97766 0.89355 1.21459 0.93625 0.91087 0.88117 0.91990 1.44116 1.44757 1.36268 1.07368 1.20334 0.89670 0.90212 0.95562 1.19514 1.33956 0.95103 0.90906 0.91329 1.25782 1.01574 0.94724 1.02720 1.70242 1.55121 0.98282 1.34714 0.85336 0.78320 0.76284 0.80456 1.20566 1.22110 1.20073 0.95079 0.91507 0.91710 0.89541 0.92391 0.94843 0.90081 0.91396 0.93287 0.92150 0.98168 0.97319 0.95220 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 9.16 71.98 0.66 -3.44 16 2 C -0.11 -4.13 3.24 -9.59 -0.03 -4.16 16 3 H 0.05 2.32 7.03 -2.38 -0.02 2.30 16 4 C 0.05 1.48 6.00 86.65 0.52 2.00 16 5 N -0.54 -16.89 5.55 -909.18 -5.05 -21.94 16 6 C 0.02 0.44 9.40 127.69 1.20 1.64 16 7 C 0.03 1.11 5.82 86.44 0.50 1.61 16 8 C 0.17 6.89 3.05 45.87 0.14 7.03 16 9 H 0.06 2.59 7.63 -2.39 -0.02 2.58 16 10 N -0.60 -31.19 2.83 -697.86 -1.97 -33.16 16 11 C 0.19 9.83 7.47 127.77 0.95 10.78 16 12 C -0.26 -14.86 9.59 84.04 0.81 -14.05 16 13 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 14 C -0.05 -3.03 5.09 84.86 0.43 -2.60 16 15 N -0.94 -56.93 10.75 21.65 0.23 -56.70 16 16 Si 0.97 45.92 29.57 68.60 2.03 47.95 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 22 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 23 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.06 1.47 7.84 -2.39 -0.02 1.45 16 25 H 0.03 0.71 8.00 -2.39 -0.02 0.70 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.58 7.73 -2.39 -0.02 1.56 16 29 H 0.06 2.45 7.09 -2.39 -0.02 2.43 16 30 H 0.00 0.00 7.25 -2.39 -0.02 -0.01 16 31 H 0.01 0.46 7.37 -2.38 -0.02 0.44 16 32 H 0.03 1.40 6.96 -2.38 -0.02 1.38 16 33 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -63.33 260.70 1.48 -61.86 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.05 Total: 3.20 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.18 Total: -1.20 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -6.79 Total: -111.81 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -63.33 1.48 -61.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306399426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.933 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds