Wall clock time and date at job start Mon Mar 30 2020 02:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.53421 * 2 1 4 4 C 1.53033 * 109.50559 * 120.10118 * 2 1 3 5 5 N 1.46844 * 109.52161 * 60.76169 * 4 2 1 6 6 C 1.46842 * 111.20033 * 61.74421 * 5 4 2 7 7 C 1.53033 * 109.52107 * 298.25759 * 6 5 4 8 8 C 1.53115 * 109.28194 * 59.17687 * 7 6 5 9 9 H 1.09001 * 109.52285 * 62.31878 * 8 7 6 10 10 N 1.46907 * 109.52296 * 182.44044 * 8 7 6 11 11 C 1.46895 * 110.99969 * 274.99725 * 10 8 7 12 12 C 1.50700 * 109.47051 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99854 * 359.72512 * 14 12 11 17 17 H 1.48498 * 109.46909 * 90.00086 * 16 14 12 18 18 H 1.48497 * 109.46701 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00101 * 16 14 12 20 20 H 1.08996 * 109.46811 * 180.09891 * 1 2 3 21 21 H 1.08998 * 109.47127 * 300.09643 * 1 2 3 22 22 H 1.08997 * 109.47103 * 60.09512 * 1 2 3 23 23 H 1.09006 * 109.46072 * 300.74353 * 4 2 1 24 24 H 1.08999 * 109.45306 * 180.77118 * 4 2 1 25 25 H 1.00893 * 111.00012 * 297.63994 * 5 4 2 26 26 H 1.08999 * 109.46405 * 178.24142 * 6 5 4 27 27 H 1.09004 * 109.46558 * 58.27025 * 6 5 4 28 28 H 1.08998 * 109.50552 * 299.23541 * 7 6 5 29 29 H 1.09003 * 109.53728 * 179.14009 * 7 6 5 30 30 H 1.00893 * 111.00026 * 38.95739 * 10 8 7 31 31 H 1.09004 * 109.47210 * 60.00310 * 11 10 8 32 32 H 1.08997 * 109.47605 * 300.00670 * 11 10 8 33 33 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 1.5676 -2.1135 1.2377 6 6 2.0846 -2.8419 0.0723 7 6 1.5750 -2.1817 -1.2108 8 6 2.0412 -0.7237 -1.2488 9 1 3.1304 -0.6900 -1.2703 10 7 1.5060 -0.0683 -2.4497 11 6 2.3725 -0.3091 -3.6112 12 6 1.7930 0.3775 -4.8211 13 1 0.8733 0.9371 -4.7356 14 6 2.4371 0.2912 -6.0372 15 7 1.9316 0.8908 -7.0930 16 14 4.0320 -0.6703 -6.1833 17 1 3.7285 -2.0834 -6.5244 18 1 4.8738 -0.0732 -7.2510 19 1 4.7612 -0.6187 -4.8908 20 1 -0.3633 -1.0276 0.0018 21 1 -0.3633 0.5153 0.8891 22 1 -0.3633 0.5123 -0.8908 23 1 1.6670 -0.2189 2.1389 24 1 3.1309 -0.7110 1.2541 25 1 0.5600 -2.1525 1.2708 26 1 1.7423 -3.8761 0.1092 27 1 3.1744 -2.8196 0.0840 28 1 0.4857 -2.2160 -1.2299 29 1 1.9710 -2.7130 -2.0763 30 1 0.5609 -0.3690 -2.6350 31 1 2.4396 -1.3808 -3.7985 32 1 3.3677 0.0876 -3.4106 33 1 2.3845 0.8298 -7.9486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306427182.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:54 Heat of formation + Delta-G solvation = -10.442526 kcal Electronic energy + Delta-G solvation = -13156.495595 eV Core-core repulsion = 11023.267466 eV Total energy + Delta-G solvation = -2133.228129 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.41532 -34.99086 -32.59096 -31.89330 -29.97770 -27.01018 -26.05191 -22.70741 -22.42068 -21.03133 -18.88555 -16.95860 -16.01744 -14.90296 -14.76933 -14.44561 -14.11552 -13.86677 -13.45111 -12.76832 -12.55255 -12.16600 -11.97602 -11.72095 -11.51000 -11.23475 -10.93581 -10.78498 -10.65608 -10.14458 -10.09790 -9.80298 -9.29380 -8.63032 -8.32988 -7.45081 -6.08133 -4.06033 3.26019 3.33833 3.36542 4.36481 4.39787 4.81926 4.94972 5.11748 5.22117 5.25944 5.38570 5.45794 5.57353 5.61535 5.78527 5.92319 5.97477 6.00804 6.05811 6.28791 6.34943 6.46936 6.56344 6.77356 7.00258 7.07768 7.39458 7.59887 7.89427 8.31889 8.63391 8.99719 9.53941 11.05224 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054550 B = 0.008750 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.162707 B = 3199.118551 C = 3479.536545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 H 0.079 0.921 4 C 0.060 3.940 5 N -0.687 5.687 6 C 0.061 3.939 7 C -0.189 4.189 8 C 0.091 3.909 9 H 0.069 0.931 10 N -0.673 5.673 11 C 0.165 3.835 12 C -0.516 4.516 13 H 0.078 0.922 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.267 1.267 20 H 0.046 0.954 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.338 0.662 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.334 0.666 31 H -0.021 1.021 32 H 0.024 0.976 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -5.744 14.507 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 H 0.097 0.903 4 C -0.070 4.070 5 N -0.316 5.316 6 C -0.070 4.070 7 C -0.230 4.230 8 C -0.021 4.021 9 H 0.087 0.913 10 N -0.302 5.302 11 C 0.037 3.963 12 C -0.555 4.555 13 H 0.096 0.904 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.192 1.192 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.156 0.844 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.152 0.848 31 H -0.004 1.004 32 H 0.042 0.958 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.522 -5.309 14.868 15.796 hybrid contribution 0.130 -1.026 -1.325 1.681 sum 0.652 -6.335 13.543 14.965 Atomic orbital electron populations 1.21810 0.95443 1.00938 1.02139 1.21807 0.96345 1.00717 0.94933 0.90298 1.22077 1.00295 0.87867 0.96780 1.60724 1.15361 1.13964 1.41526 1.21954 1.00248 0.97026 0.87757 1.23050 1.01436 0.99025 0.99482 1.21562 0.98871 0.89962 0.91660 0.91303 1.60594 1.05875 1.60162 1.03522 1.20016 0.93582 0.93739 0.88980 1.21073 1.10806 1.32375 0.91212 0.90380 1.24916 0.97389 0.95365 0.95686 1.69902 1.39899 1.43824 1.00299 0.86814 0.84226 0.80309 0.78086 1.20371 1.21109 1.19205 0.93500 0.93334 0.91253 0.90957 0.91204 0.84370 0.91260 0.91172 0.91753 0.91565 0.84785 1.00378 0.95753 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.27 37.16 0.31 -1.56 16 2 C -0.12 -1.62 2.94 -90.54 -0.27 -1.89 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.06 0.71 6.06 -3.84 -0.02 0.69 16 5 N -0.69 -8.08 6.80 -113.82 -0.77 -8.85 16 6 C 0.06 0.75 6.55 -3.84 -0.03 0.72 16 7 C -0.19 -2.75 4.98 -26.65 -0.13 -2.88 16 8 C 0.09 1.50 2.24 -67.59 -0.15 1.35 16 9 H 0.07 1.22 7.80 -51.93 -0.41 0.81 16 10 N -0.67 -13.80 5.69 -107.86 -0.61 -14.41 16 11 C 0.16 4.02 4.31 -4.98 -0.02 4.00 16 12 C -0.52 -14.92 9.87 -34.44 -0.34 -15.26 16 13 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 16 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 20 H 0.05 0.56 5.12 -51.93 -0.27 0.29 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 1.01 7.17 -51.93 -0.37 0.64 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.34 3.69 7.14 -39.30 -0.28 3.40 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.91 6.54 -51.93 -0.34 0.57 16 29 H 0.07 1.06 7.52 -51.93 -0.39 0.67 16 30 H 0.33 6.73 7.67 -39.30 -0.30 6.43 16 31 H -0.02 -0.52 6.92 -51.93 -0.36 -0.88 16 32 H 0.02 0.62 7.10 -51.93 -0.37 0.25 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 253.57 15.07 3.82 3.82 Total: -1.00 -29.98 253.57 -7.42 -37.40 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.21 Total: 4.93 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.75 Total: -12.92 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.61 Total: -50.38 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.98 -7.42 -37.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306427182.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.960 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds