Wall clock time and date at job start Mon Mar 30 2020 02:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.53421 * 2 1 4 4 C 1.53033 * 109.50559 * 120.10118 * 2 1 3 5 5 N 1.46844 * 109.52161 * 60.76169 * 4 2 1 6 6 C 1.46842 * 111.20033 * 61.74421 * 5 4 2 7 7 C 1.53033 * 109.52107 * 298.25759 * 6 5 4 8 8 C 1.53115 * 109.28194 * 59.17687 * 7 6 5 9 9 H 1.09001 * 109.52285 * 62.31878 * 8 7 6 10 10 N 1.46907 * 109.52296 * 182.44044 * 8 7 6 11 11 C 1.46895 * 110.99969 * 274.99725 * 10 8 7 12 12 C 1.50700 * 109.47051 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99854 * 359.72512 * 14 12 11 17 17 H 1.48498 * 109.46909 * 90.00086 * 16 14 12 18 18 H 1.48497 * 109.46701 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00101 * 16 14 12 20 20 H 1.08996 * 109.46811 * 180.09891 * 1 2 3 21 21 H 1.08998 * 109.47127 * 300.09643 * 1 2 3 22 22 H 1.08997 * 109.47103 * 60.09512 * 1 2 3 23 23 H 1.09006 * 109.46072 * 300.74353 * 4 2 1 24 24 H 1.08999 * 109.45306 * 180.77118 * 4 2 1 25 25 H 1.00893 * 111.00012 * 297.63994 * 5 4 2 26 26 H 1.08999 * 109.46405 * 178.24142 * 6 5 4 27 27 H 1.09004 * 109.46558 * 58.27025 * 6 5 4 28 28 H 1.08998 * 109.50552 * 299.23541 * 7 6 5 29 29 H 1.09003 * 109.53728 * 179.14009 * 7 6 5 30 30 H 1.00893 * 111.00026 * 38.95739 * 10 8 7 31 31 H 1.09004 * 109.47210 * 60.00310 * 11 10 8 32 32 H 1.08997 * 109.47605 * 300.00670 * 11 10 8 33 33 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 1.5676 -2.1135 1.2377 6 6 2.0846 -2.8419 0.0723 7 6 1.5750 -2.1817 -1.2108 8 6 2.0412 -0.7237 -1.2488 9 1 3.1304 -0.6900 -1.2703 10 7 1.5060 -0.0683 -2.4497 11 6 2.3725 -0.3091 -3.6112 12 6 1.7930 0.3775 -4.8211 13 1 0.8733 0.9371 -4.7356 14 6 2.4371 0.2912 -6.0372 15 7 1.9316 0.8908 -7.0930 16 14 4.0320 -0.6703 -6.1833 17 1 3.7285 -2.0834 -6.5244 18 1 4.8738 -0.0732 -7.2510 19 1 4.7612 -0.6187 -4.8908 20 1 -0.3633 -1.0276 0.0018 21 1 -0.3633 0.5153 0.8891 22 1 -0.3633 0.5123 -0.8908 23 1 1.6670 -0.2189 2.1389 24 1 3.1309 -0.7110 1.2541 25 1 0.5600 -2.1525 1.2708 26 1 1.7423 -3.8761 0.1092 27 1 3.1744 -2.8196 0.0840 28 1 0.4857 -2.2160 -1.2299 29 1 1.9710 -2.7130 -2.0763 30 1 0.5609 -0.3690 -2.6350 31 1 2.4396 -1.3808 -3.7985 32 1 3.3677 0.0876 -3.4106 33 1 2.3845 0.8298 -7.9486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306427182.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:54 Heat of formation + Delta-G solvation = -33.567968 kcal Electronic energy + Delta-G solvation = -13157.498389 eV Core-core repulsion = 11023.267466 eV Total energy + Delta-G solvation = -2134.230923 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58063 -36.58331 -34.57888 -33.08847 -31.45329 -28.65010 -27.33487 -24.17311 -23.49121 -22.82199 -20.10866 -18.95842 -17.39820 -16.50980 -16.02466 -15.77950 -15.51625 -15.31683 -14.76496 -14.64621 -13.87464 -13.74105 -13.55265 -12.92407 -12.71241 -12.59431 -12.44899 -12.25457 -12.04733 -11.83770 -11.59756 -11.29258 -11.24053 -10.85955 -9.37890 -9.05739 -8.34569 -6.39176 1.29966 1.32563 1.43726 2.29688 2.99193 3.33892 3.53047 3.76828 3.95212 4.15259 4.21818 4.36297 4.46382 4.50021 4.70359 4.78393 4.81917 4.86858 4.96180 5.01417 5.05442 5.14307 5.27700 5.35829 5.44227 5.50478 5.94252 6.08615 6.50575 6.53274 6.63117 6.73771 7.26078 8.82261 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054550 B = 0.008750 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.162707 B = 3199.118551 C = 3479.536545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 H 0.066 0.934 4 C 0.067 3.933 5 N -0.682 5.682 6 C 0.067 3.933 7 C -0.182 4.182 8 C 0.087 3.913 9 H 0.056 0.944 10 N -0.681 5.681 11 C 0.178 3.822 12 C -0.530 4.530 13 H 0.036 0.964 14 C 0.008 3.992 15 N -0.946 5.946 16 Si 0.952 3.048 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.253 1.253 20 H 0.057 0.943 21 H 0.068 0.932 22 H 0.044 0.956 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.346 0.654 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.334 0.666 31 H -0.016 1.016 32 H 0.019 0.981 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -7.242 16.338 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 H 0.084 0.916 4 C -0.063 4.063 5 N -0.312 5.312 6 C -0.063 4.063 7 C -0.223 4.223 8 C -0.024 4.024 9 H 0.075 0.925 10 N -0.310 5.310 11 C 0.049 3.951 12 C -0.568 4.568 13 H 0.054 0.946 14 C -0.189 4.189 15 N -0.587 5.587 16 Si 0.775 3.225 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.177 1.177 20 H 0.076 0.924 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.111 0.889 24 H 0.087 0.913 25 H 0.165 0.835 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.001 0.999 32 H 0.037 0.963 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.384 -6.812 16.733 18.119 hybrid contribution -0.236 -0.493 -1.872 1.951 sum 1.148 -7.305 14.860 16.599 Atomic orbital electron populations 1.21764 0.94545 1.01612 1.01969 1.21775 0.97047 0.99934 0.94553 0.91591 1.22057 1.00278 0.87790 0.96193 1.60732 1.16012 1.13625 1.40783 1.21927 1.00177 0.97747 0.86495 1.22964 1.01630 0.97347 1.00313 1.21684 0.98155 0.91611 0.90902 0.92534 1.60509 1.05456 1.61535 1.03540 1.19717 0.93480 0.93134 0.88722 1.21355 1.09693 1.32327 0.93443 0.94561 1.25891 1.01492 0.96458 0.95097 1.70052 1.41943 1.45562 1.01106 0.85653 0.79168 0.78980 0.78731 1.18993 1.20407 1.17710 0.92399 0.91287 0.93641 0.88912 0.91335 0.83483 0.89503 0.91322 0.91295 0.93152 0.84765 0.99866 0.96302 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.27 71.98 0.60 -2.77 16 2 C -0.11 -2.92 2.94 -10.74 -0.03 -2.95 16 3 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.07 1.40 6.06 86.32 0.52 1.92 16 5 N -0.68 -13.77 6.80 -514.03 -3.49 -17.26 16 6 C 0.07 1.47 6.55 86.33 0.57 2.03 16 7 C -0.18 -4.97 4.98 30.64 0.15 -4.82 16 8 C 0.09 2.78 2.24 44.99 0.10 2.88 16 9 H 0.06 1.95 7.80 -2.39 -0.02 1.93 16 10 N -0.68 -28.12 5.69 -495.17 -2.82 -30.94 16 11 C 0.18 8.72 4.31 85.56 0.37 9.09 16 12 C -0.53 -31.43 9.87 25.60 0.25 -31.18 16 13 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 14 C 0.01 0.49 5.47 84.66 0.46 0.95 16 15 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 16 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 17 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 20 H 0.06 1.24 5.12 -2.39 -0.01 1.22 16 21 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.04 1.30 7.17 -2.39 -0.02 1.28 16 23 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.35 6.26 7.14 -89.70 -0.64 5.62 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.07 1.82 6.54 -2.39 -0.02 1.80 16 29 H 0.05 1.54 7.52 -2.39 -0.02 1.52 16 30 H 0.33 13.69 7.67 -89.70 -0.69 13.00 16 31 H -0.02 -0.78 6.92 -2.38 -0.02 -0.79 16 32 H 0.02 0.95 7.10 -2.39 -0.02 0.93 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -65.10 253.57 -1.43 -66.53 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.29 Total: 19.42 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 2.99 Total: -24.84 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -6.01 Total: -107.82 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -65.10 -1.43 -66.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306427182.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.964 kcal (2) G-P(sol) polarization free energy of solvation -65.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds