Wall clock time and date at job start Mon Mar 30 2020 02:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.53707 * 2 1 4 4 C 1.53037 * 109.50488 * 239.89989 * 2 1 3 5 5 N 1.46850 * 109.52028 * 180.87945 * 4 2 1 6 6 C 1.46929 * 111.22205 * 61.74456 * 5 4 2 7 7 C 1.53037 * 109.47910 * 298.28247 * 6 5 4 8 8 C 1.53114 * 109.31211 * 59.15772 * 7 6 5 9 9 H 1.08998 * 109.52777 * 62.29228 * 8 7 6 10 10 N 1.46903 * 109.52485 * 182.42092 * 8 7 6 11 11 C 1.46895 * 110.99915 * 274.99906 * 10 8 7 12 12 C 1.50703 * 109.47057 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99793 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00196 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99355 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 119.99926 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47454 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47207 * 119.99784 * 16 14 12 19 19 H 1.48498 * 109.47073 * 239.99454 * 16 14 12 20 20 H 1.08998 * 109.47032 * 299.90254 * 1 2 3 21 21 H 1.09004 * 109.46428 * 59.90413 * 1 2 3 22 22 H 1.08999 * 109.46638 * 179.89952 * 1 2 3 23 23 H 1.08997 * 109.46525 * 300.89453 * 4 2 1 24 24 H 1.08995 * 109.46235 * 60.86989 * 4 2 1 25 25 H 1.00900 * 111.00280 * 297.64221 * 5 4 2 26 26 H 1.08994 * 109.51866 * 178.25481 * 6 5 4 27 27 H 1.09007 * 109.45009 * 58.26164 * 6 5 4 28 28 H 1.09002 * 109.50283 * 299.19589 * 7 6 5 29 29 H 1.09003 * 109.50113 * 179.11776 * 7 6 5 30 30 H 1.00904 * 110.99750 * 151.04228 * 10 8 7 31 31 H 1.09004 * 109.47257 * 299.99949 * 11 10 8 32 32 H 1.09002 * 109.46900 * 59.99819 * 11 10 8 33 33 H 0.97005 * 119.99303 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0410 -0.7235 -1.2480 5 7 3.5093 -0.7421 -1.2378 6 6 4.0238 -1.4732 -0.0718 7 6 3.5712 -0.7719 1.2109 8 6 2.0413 -0.7238 1.2488 9 1 1.6452 -1.7390 1.2702 10 7 1.6024 -0.0003 2.4497 11 6 1.5397 -0.8975 3.6112 12 6 1.0875 -0.1216 4.8214 13 1 0.8682 0.9325 4.7361 14 6 0.9537 -0.7573 6.0375 15 7 1.2202 -2.0410 6.1412 16 14 0.3939 0.2046 7.5377 17 1 0.1596 1.6211 7.1584 18 1 -0.8663 -0.3823 8.0602 19 1 1.4425 0.1395 8.5871 20 1 -0.3633 0.5123 0.8908 21 1 -0.3632 0.5154 -0.8892 22 1 -0.3632 -1.0277 -0.0018 23 1 1.6649 -1.7465 -1.2544 24 1 1.6907 -0.2023 -2.1389 25 1 3.8831 0.1946 -1.2708 26 1 5.1129 -1.4965 -0.1081 27 1 3.6383 -2.4928 -0.0836 28 1 3.9678 0.2433 1.2299 29 1 3.9395 -1.3228 2.0763 30 1 0.7144 0.4530 2.2944 31 1 0.8330 -1.7028 3.4105 32 1 2.5273 -1.3190 3.7984 33 1 1.1257 -2.4884 6.9967 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306427186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:59 Heat of formation + Delta-G solvation = -17.029904 kcal Electronic energy + Delta-G solvation = -13034.038475 eV Core-core repulsion = 10900.524696 eV Total energy + Delta-G solvation = -2133.513779 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.04064 -34.86354 -32.85907 -32.03005 -29.68624 -26.58980 -25.71390 -22.89284 -21.63702 -20.96924 -19.72351 -16.59096 -15.59362 -15.00294 -14.82700 -14.60567 -14.06327 -13.51519 -12.89170 -12.63707 -12.30927 -11.86661 -11.84874 -11.67990 -11.57440 -11.20444 -10.83990 -10.74321 -10.62728 -10.29370 -10.08974 -9.70697 -9.15258 -8.49538 -8.22376 -7.28577 -6.04212 -4.06142 3.29763 3.36942 3.42098 4.40211 4.45177 4.86618 5.05688 5.17164 5.28126 5.31849 5.52875 5.56832 5.67037 5.75051 5.88352 5.96334 6.09235 6.13921 6.21708 6.33615 6.43739 6.56171 6.70653 7.12297 7.27682 7.42093 7.46809 7.79001 8.13483 8.41701 8.62654 9.03739 9.58915 11.06908 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057785 B = 0.007861 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.440554 B = 3561.115893 C = 3823.401200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 H 0.073 0.927 4 C 0.064 3.936 5 N -0.688 5.688 6 C 0.056 3.944 7 C -0.143 4.143 8 C 0.093 3.907 9 H 0.034 0.966 10 N -0.688 5.688 11 C 0.195 3.805 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.338 0.662 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.329 0.671 31 H -0.016 1.016 32 H 0.027 0.973 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 2.451 -12.331 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 H 0.092 0.908 4 C -0.066 4.066 5 N -0.316 5.316 6 C -0.074 4.074 7 C -0.183 4.183 8 C -0.018 4.018 9 H 0.051 0.949 10 N -0.320 5.320 11 C 0.069 3.931 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.155 0.845 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.148 0.852 31 H 0.002 0.998 32 H 0.045 0.955 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.190 1.976 -12.471 12.815 hybrid contribution -1.296 0.483 1.593 2.109 sum 0.894 2.458 -10.878 11.188 Atomic orbital electron populations 1.21796 0.95194 1.01811 1.01732 1.22043 0.96247 1.00470 0.96275 0.90836 1.22061 0.87651 1.00624 0.96252 1.60748 1.07453 1.21381 1.41984 1.22066 0.99474 0.97922 0.87971 1.22242 0.96335 1.01260 0.98414 1.21454 0.94711 0.95559 0.90084 0.94857 1.60732 1.34822 1.33133 1.03288 1.19569 0.96241 0.90538 0.86801 1.21237 1.44599 0.96071 0.93344 0.92013 1.25000 0.95625 0.94937 0.99069 1.69980 1.49373 1.09152 1.25206 0.86433 0.78199 0.80120 0.82611 1.19679 1.21079 1.20966 0.92030 0.92819 0.92847 0.91209 0.91085 0.84510 0.90970 0.91275 0.91743 0.91284 0.85229 0.99799 0.95493 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.00 37.16 0.33 -1.65 16 2 C -0.13 -1.86 2.50 -90.54 -0.23 -2.08 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.06 0.81 5.84 -3.83 -0.02 0.79 16 5 N -0.69 -8.69 6.87 -113.75 -0.78 -9.48 16 6 C 0.06 0.76 6.56 -3.79 -0.02 0.73 16 7 C -0.14 -2.37 5.57 -26.65 -0.15 -2.52 16 8 C 0.09 1.67 2.01 -67.59 -0.14 1.53 16 9 H 0.03 0.66 7.80 -51.93 -0.41 0.25 16 10 N -0.69 -14.98 6.30 -107.86 -0.68 -15.66 16 11 C 0.20 5.21 5.24 -4.98 -0.03 5.19 16 12 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 16 Si 0.90 21.91 29.54 -169.99 -5.02 16.88 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H 0.06 0.90 6.32 -51.93 -0.33 0.57 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.34 3.90 8.86 -39.29 -0.35 3.55 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 30 H 0.33 6.89 6.32 -39.29 -0.25 6.64 16 31 H -0.02 -0.45 8.06 -51.93 -0.42 -0.87 16 32 H 0.03 0.78 7.49 -51.93 -0.39 0.39 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 262.43 15.07 3.95 3.95 Total: -1.00 -29.93 262.43 -7.91 -37.84 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.45 Total: 4.49 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.67 Total: -11.65 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.72 Total: -51.53 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.93 -7.91 -37.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306427186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.812 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds