Wall clock time and date at job start Mon Mar 30 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.36989 * 2 1 4 4 C 1.54382 * 110.41276 * 122.35224 * 2 1 3 5 5 C 1.54257 * 105.06052 * 142.62998 * 4 2 1 6 6 H 1.08998 * 110.32238 * 241.10511 * 5 4 2 7 7 C 1.53001 * 110.32265 * 118.89704 * 5 4 2 8 8 N 1.46506 * 109.46961 * 177.90808 * 7 5 4 9 9 C 1.36937 * 119.99956 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99964 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00154 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99953 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99897 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47397 * 89.99734 * 13 11 9 15 15 H 1.48504 * 109.47323 * 209.99992 * 13 11 9 16 16 H 1.48498 * 109.47334 * 330.00043 * 13 11 9 17 17 C 1.54379 * 105.06256 * 0.02562 * 5 4 2 18 18 N 1.48562 * 104.69842 * 336.08765 * 17 5 4 19 19 C 1.46894 * 111.00344 * 159.09785 * 18 17 5 20 20 H 1.09006 * 109.46845 * 297.64725 * 1 2 3 21 21 H 1.08995 * 109.47012 * 57.64202 * 1 2 3 22 22 H 1.08998 * 109.47036 * 177.65238 * 1 2 3 23 23 H 1.08997 * 110.32536 * 23.73619 * 4 2 1 24 24 H 1.09002 * 110.40960 * 261.57052 * 4 2 1 25 25 H 1.08997 * 109.47460 * 297.90692 * 7 5 4 26 26 H 1.08998 * 109.47255 * 57.91242 * 7 5 4 27 27 H 0.97002 * 119.99949 * 0.02562 * 8 7 5 28 28 H 0.96996 * 119.99483 * 179.97438 * 12 11 9 29 29 H 1.09002 * 110.41258 * 94.92615 * 17 5 4 30 30 H 1.09002 * 110.41328 * 217.24846 * 17 5 4 31 31 H 1.09007 * 109.47069 * 59.87301 * 19 18 17 32 32 H 1.08995 * 109.47381 * 179.87413 * 19 18 17 33 33 H 1.09000 * 109.47076 * 299.87817 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7743 1.2223 5 6 3.3177 -1.5181 0.7070 6 1 3.1860 -2.5952 0.8093 7 6 4.5620 -1.0588 1.4698 8 7 5.7279 -1.8119 1.0009 9 6 6.9619 -1.5711 1.5434 10 1 7.0758 -0.8258 2.3167 11 6 8.0668 -2.2842 1.0987 12 7 9.2530 -2.0524 1.6199 13 14 7.8701 -3.5727 -0.2393 14 1 8.0555 -2.9379 -1.5689 15 1 8.8872 -4.6386 -0.0535 16 1 6.5111 -4.1659 -0.1593 17 6 3.4295 -1.1302 -0.7831 18 7 2.0492 -0.7476 -1.1775 19 6 2.0601 0.0975 -2.3790 20 1 -0.3633 0.4769 0.9104 21 1 -0.3633 0.5500 -0.8681 22 1 -0.3633 -1.0268 -0.0421 23 1 1.3236 -1.4863 1.5775 24 1 2.3414 -0.0832 2.0199 25 1 4.7227 0.0051 1.2960 26 1 4.4203 -1.2355 2.5360 27 1 5.6257 -2.4810 0.3060 28 1 10.0249 -2.5509 1.3093 29 1 4.1079 -0.2860 -0.9064 30 1 3.7714 -1.9808 -1.3728 31 1 2.5225 -0.4473 -3.2022 32 1 1.0370 0.3612 -2.6470 33 1 2.6290 1.0055 -2.1793 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306607385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:17 Heat of formation + Delta-G solvation = 10.232588 kcal Electronic energy + Delta-G solvation = -12961.088445 eV Core-core repulsion = 10828.756856 eV Total energy + Delta-G solvation = -2132.331588 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.18026 -35.07105 -32.45707 -31.64357 -30.36067 -26.39017 -25.80171 -23.83411 -21.87184 -20.24810 -19.81096 -17.50874 -15.62230 -15.37824 -14.66144 -14.39296 -13.94325 -13.54068 -13.37480 -12.71769 -12.46965 -12.33564 -12.05701 -11.73418 -11.47369 -11.13904 -11.04432 -10.89615 -10.61739 -10.32632 -10.22786 -10.02032 -9.56704 -8.87929 -8.41354 -7.20847 -5.75238 -3.10342 3.38975 3.42345 3.46568 4.08346 4.60978 4.72634 4.80777 5.10833 5.26202 5.35517 5.46616 5.49310 5.54760 5.58498 5.71643 5.78307 5.86883 5.88325 5.96377 6.05398 6.08872 6.25371 6.28130 6.33436 6.68599 6.80879 6.97307 7.13296 8.01386 8.44106 9.23483 9.95987 10.16478 11.43348 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054562 B = 0.008403 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.053183 B = 3331.257009 C = 3604.230384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 H 0.051 0.949 4 C -0.112 4.112 5 C -0.102 4.102 6 H 0.078 0.922 7 C 0.165 3.835 8 N -0.756 5.756 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.003 3.997 12 N -0.935 5.935 13 Si 0.884 3.116 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.276 1.276 17 C 0.040 3.960 18 N -0.515 5.515 19 C 0.014 3.986 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.025 0.975 26 H 0.028 0.972 27 H 0.361 0.639 28 H 0.259 0.741 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.771 3.454 -5.004 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 H 0.069 0.931 4 C -0.150 4.150 5 C -0.122 4.122 6 H 0.097 0.903 7 C 0.038 3.962 8 N -0.402 5.402 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.583 5.583 13 Si 0.714 3.286 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.202 1.202 17 C -0.088 4.088 18 N -0.240 5.240 19 C -0.135 4.135 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.194 0.806 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -16.921 3.096 -5.004 17.915 hybrid contribution 0.609 -0.197 -0.867 1.078 sum -16.313 2.899 -5.871 17.578 Atomic orbital electron populations 1.21697 0.94182 1.02284 1.01000 1.22724 0.95675 0.95937 0.90982 0.93142 1.22354 0.96965 0.99007 0.96709 1.22121 0.95122 1.00718 0.94212 0.90337 1.20748 0.84991 0.94706 0.95800 1.42727 1.04846 1.45880 1.46711 1.19078 0.83307 1.18106 1.16872 0.89275 1.24671 0.95267 0.99665 0.99617 1.69705 0.98593 1.44540 1.45501 0.86548 0.77095 0.82250 0.82702 1.21091 1.21687 1.20244 1.23158 0.88911 1.00715 0.96013 1.65426 1.18975 1.36693 1.02861 1.22480 1.01410 0.95746 0.93831 0.92419 0.93160 0.91875 0.91097 0.91017 0.95713 0.95370 0.80641 0.93086 0.92975 0.90477 0.91465 0.91647 0.95445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.32 37.16 0.35 -1.03 16 2 C 0.06 0.69 2.89 -65.92 -0.19 0.50 16 3 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 4 C -0.11 -1.48 6.20 -25.35 -0.16 -1.64 16 5 C -0.10 -1.66 3.13 -89.24 -0.28 -1.94 16 6 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 7 C 0.17 3.28 5.36 -4.04 -0.02 3.25 16 8 N -0.76 -18.44 5.24 -59.91 -0.31 -18.75 16 9 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 10 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 11 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 12 N -0.94 -29.83 13.97 55.49 0.78 -29.06 16 13 Si 0.88 22.50 27.73 -169.99 -4.71 17.79 16 14 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 17 C 0.04 0.63 5.70 -2.18 -0.01 0.62 16 18 N -0.52 -7.16 5.35 -230.12 -1.23 -8.39 16 19 C 0.01 0.17 9.43 60.06 0.57 0.74 16 20 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 24 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 25 H 0.02 0.50 8.05 -51.93 -0.42 0.09 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.36 8.59 5.38 -40.82 -0.22 8.37 16 28 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 29 H 0.05 0.89 7.63 -51.93 -0.40 0.50 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.06 0.67 7.64 -51.93 -0.40 0.28 16 33 H 0.03 0.33 7.98 -51.93 -0.41 -0.09 16 LS Contribution 264.09 15.07 3.98 3.98 Total: -1.00 -31.31 264.09 -7.10 -38.41 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.59 Total: 2.73 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 0.00 Total: -6.71 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.77 Total: -56.20 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.31 -7.10 -38.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306607385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.641 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds