Wall clock time and date at job start Mon Mar 30 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.36989 * 2 1 4 4 C 1.54382 * 110.41276 * 122.35224 * 2 1 3 5 5 C 1.54257 * 105.06052 * 142.62998 * 4 2 1 6 6 H 1.08998 * 110.32238 * 241.10511 * 5 4 2 7 7 C 1.53001 * 110.32265 * 118.89704 * 5 4 2 8 8 N 1.46506 * 109.46961 * 177.90808 * 7 5 4 9 9 C 1.36937 * 119.99956 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99964 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00154 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99953 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99897 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47397 * 89.99734 * 13 11 9 15 15 H 1.48504 * 109.47323 * 209.99992 * 13 11 9 16 16 H 1.48498 * 109.47334 * 330.00043 * 13 11 9 17 17 C 1.54379 * 105.06256 * 0.02562 * 5 4 2 18 18 N 1.48562 * 104.69842 * 336.08765 * 17 5 4 19 19 C 1.46894 * 111.00344 * 159.09785 * 18 17 5 20 20 H 1.09006 * 109.46845 * 297.64725 * 1 2 3 21 21 H 1.08995 * 109.47012 * 57.64202 * 1 2 3 22 22 H 1.08998 * 109.47036 * 177.65238 * 1 2 3 23 23 H 1.08997 * 110.32536 * 23.73619 * 4 2 1 24 24 H 1.09002 * 110.40960 * 261.57052 * 4 2 1 25 25 H 1.08997 * 109.47460 * 297.90692 * 7 5 4 26 26 H 1.08998 * 109.47255 * 57.91242 * 7 5 4 27 27 H 0.97002 * 119.99949 * 0.02562 * 8 7 5 28 28 H 0.96996 * 119.99483 * 179.97438 * 12 11 9 29 29 H 1.09002 * 110.41258 * 94.92615 * 17 5 4 30 30 H 1.09002 * 110.41328 * 217.24846 * 17 5 4 31 31 H 1.09007 * 109.47069 * 59.87301 * 19 18 17 32 32 H 1.08995 * 109.47381 * 179.87413 * 19 18 17 33 33 H 1.09000 * 109.47076 * 299.87817 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7743 1.2223 5 6 3.3177 -1.5181 0.7070 6 1 3.1860 -2.5952 0.8093 7 6 4.5620 -1.0588 1.4698 8 7 5.7279 -1.8119 1.0009 9 6 6.9619 -1.5711 1.5434 10 1 7.0758 -0.8258 2.3167 11 6 8.0668 -2.2842 1.0987 12 7 9.2530 -2.0524 1.6199 13 14 7.8701 -3.5727 -0.2393 14 1 8.0555 -2.9379 -1.5689 15 1 8.8872 -4.6386 -0.0535 16 1 6.5111 -4.1659 -0.1593 17 6 3.4295 -1.1302 -0.7831 18 7 2.0492 -0.7476 -1.1775 19 6 2.0601 0.0975 -2.3790 20 1 -0.3633 0.4769 0.9104 21 1 -0.3633 0.5500 -0.8681 22 1 -0.3633 -1.0268 -0.0421 23 1 1.3236 -1.4863 1.5775 24 1 2.3414 -0.0832 2.0199 25 1 4.7227 0.0051 1.2960 26 1 4.4203 -1.2355 2.5360 27 1 5.6257 -2.4810 0.3060 28 1 10.0249 -2.5509 1.3093 29 1 4.1079 -0.2860 -0.9064 30 1 3.7714 -1.9808 -1.3728 31 1 2.5225 -0.4473 -3.2022 32 1 1.0370 0.3612 -2.6470 33 1 2.6290 1.0055 -2.1793 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306607385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:17 Heat of formation + Delta-G solvation = -12.240864 kcal Electronic energy + Delta-G solvation = -12962.062967 eV Core-core repulsion = 10828.756856 eV Total energy + Delta-G solvation = -2133.306110 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.32925 -36.85538 -34.20802 -32.84780 -32.01214 -27.86934 -26.90880 -25.21781 -23.72169 -21.46539 -21.03433 -19.57831 -17.00916 -16.60716 -16.30633 -15.78421 -15.39852 -14.99459 -14.81201 -14.37927 -13.74012 -13.68480 -13.30579 -13.08811 -12.88528 -12.64846 -12.23145 -12.20065 -12.03496 -11.86432 -11.81260 -11.50865 -11.40340 -10.99817 -9.49963 -9.32725 -8.05484 -5.39231 1.36108 1.39170 1.46914 2.46194 3.02881 3.25782 3.48552 3.65829 3.92507 4.04108 4.18587 4.39823 4.49803 4.52833 4.54121 4.64837 4.78561 4.84257 4.91637 4.95859 4.97303 5.01142 5.15913 5.24956 5.37321 5.42070 5.72371 5.87345 6.09756 6.18966 7.04946 7.80892 8.00997 9.16146 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054562 B = 0.008403 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.053183 B = 3331.257009 C = 3604.230384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.053 3.947 3 H 0.048 0.952 4 C -0.107 4.107 5 C -0.096 4.096 6 H 0.078 0.922 7 C 0.164 3.836 8 N -0.758 5.758 9 C -0.239 4.239 10 H 0.055 0.945 11 C -0.063 4.063 12 N -0.983 5.983 13 Si 0.955 3.045 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.252 1.252 17 C 0.041 3.959 18 N -0.519 5.519 19 C 0.013 3.987 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.020 0.980 26 H 0.027 0.973 27 H 0.366 0.634 28 H 0.259 0.741 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.092 2.936 -6.145 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.055 4.055 3 H 0.066 0.934 4 C -0.146 4.146 5 C -0.115 4.115 6 H 0.096 0.904 7 C 0.038 3.962 8 N -0.403 5.403 9 C -0.370 4.370 10 H 0.073 0.927 11 C -0.255 4.255 12 N -0.634 5.634 13 Si 0.782 3.218 14 H -0.203 1.203 15 H -0.219 1.219 16 H -0.176 1.176 17 C -0.087 4.087 18 N -0.243 5.243 19 C -0.136 4.136 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.199 0.801 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.302 2.594 -6.146 20.423 hybrid contribution 1.309 0.065 -0.447 1.385 sum -17.993 2.659 -6.593 19.347 Atomic orbital electron populations 1.21658 0.92057 1.02534 1.02268 1.22820 0.97295 0.95408 0.89970 0.93412 1.22366 0.95766 0.99240 0.97215 1.22017 0.94450 1.00929 0.94152 0.90388 1.20890 0.85168 0.93938 0.96219 1.42728 1.04521 1.46443 1.46649 1.19063 0.85368 1.16794 1.15740 0.92654 1.25523 0.94797 1.02501 1.02629 1.69887 0.99621 1.46248 1.47630 0.85409 0.78081 0.79051 0.79304 1.20292 1.21931 1.17645 1.23052 0.90049 0.99888 0.95715 1.65460 1.17203 1.37741 1.03899 1.22550 1.02674 0.95300 0.93062 0.90863 0.92306 0.92045 0.89519 0.90562 0.96230 0.95472 0.80066 0.93239 0.94728 0.91004 0.91278 0.89664 0.95759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.32 71.98 0.67 -1.51 16 2 C 0.05 1.19 2.89 45.01 0.13 1.32 16 3 H 0.05 1.11 7.91 -2.39 -0.02 1.09 16 4 C -0.11 -2.58 6.20 31.49 0.20 -2.39 16 5 C -0.10 -2.95 3.13 -9.90 -0.03 -2.98 16 6 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 7 C 0.16 6.43 5.36 86.38 0.46 6.89 16 8 N -0.76 -36.56 5.24 -343.44 -1.80 -38.36 16 9 C -0.24 -14.04 10.47 84.03 0.88 -13.16 16 10 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 11 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 12 N -0.98 -64.08 13.97 21.65 0.30 -63.77 16 13 Si 0.95 46.26 27.73 68.60 1.90 48.16 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 16 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 17 C 0.04 1.25 5.70 86.45 0.49 1.74 16 18 N -0.52 -13.20 5.35 -881.97 -4.72 -17.92 16 19 C 0.01 0.27 9.43 127.69 1.20 1.48 16 20 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 21 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.09 1.84 7.86 -2.39 -0.02 1.82 16 24 H 0.08 1.77 7.71 -2.39 -0.02 1.75 16 25 H 0.02 0.80 8.05 -2.39 -0.02 0.78 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.37 16.84 5.38 -92.71 -0.50 16.34 16 28 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 29 H 0.03 1.16 7.63 -2.39 -0.02 1.14 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 1.49 7.64 -2.39 -0.02 1.48 16 33 H 0.02 0.53 7.98 -2.39 -0.02 0.51 16 Total: -1.00 -67.02 264.09 0.66 -66.36 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.50 Total: 17.48 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 4.47 Total: -11.94 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -6.22 Total: -120.05 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.90 Total: 48.16 kcal Total: -67.02 0.66 -66.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306607385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.116 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds