Wall clock time and date at job start Mon Mar 30 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.48894 * 2 1 4 4 C 1.53048 * 109.49125 * 120.04933 * 2 1 3 5 5 N 1.46952 * 109.36453 * 178.36708 * 4 2 1 6 6 C 1.46908 * 110.99933 * 176.80724 * 5 4 2 7 7 C 1.50704 * 109.46587 * 64.82132 * 6 5 4 8 8 H 1.07990 * 120.00342 * 354.98818 * 7 6 5 9 9 C 1.37886 * 119.99220 * 174.98931 * 7 6 5 10 10 N 1.31505 * 120.00374 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99471 * 180.27564 * 9 7 6 12 12 H 1.48494 * 109.46934 * 269.72483 * 11 9 7 13 13 H 1.48505 * 109.47030 * 29.72529 * 11 9 7 14 14 H 1.48499 * 109.47186 * 149.72411 * 11 9 7 15 15 C 1.46952 * 110.88241 * 300.67603 * 5 4 2 16 16 C 1.53055 * 109.36530 * 59.32123 * 15 5 4 17 17 N 1.46961 * 109.36404 * 301.60078 * 16 15 5 18 18 H 1.09006 * 109.47056 * 299.95253 * 1 2 3 19 19 H 1.08997 * 109.47098 * 59.94984 * 1 2 3 20 20 H 1.08994 * 109.47141 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46960 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.46936 * 300.04602 * 3 2 1 23 23 H 1.08997 * 109.46460 * 60.04700 * 3 2 1 24 24 H 1.08999 * 109.49079 * 58.39496 * 4 2 1 25 25 H 1.09006 * 109.48487 * 298.33145 * 4 2 1 26 26 H 1.08994 * 109.46771 * 304.82227 * 6 5 4 27 27 H 1.09002 * 109.46866 * 184.82190 * 6 5 4 28 28 H 0.97004 * 120.00434 * 179.97438 * 10 9 7 29 29 H 1.08999 * 109.49463 * 179.28713 * 15 5 4 30 30 H 1.08996 * 109.48815 * 299.35684 * 15 5 4 31 31 H 1.08999 * 109.49111 * 181.63122 * 16 15 5 32 32 H 1.09003 * 109.48360 * 61.56411 * 16 15 5 33 33 H 1.00895 * 110.99915 * 183.18620 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0407 -0.7225 1.2489 5 7 3.5097 -0.7551 1.2264 6 6 4.0412 -1.3748 2.4477 7 6 3.6253 -2.8225 2.4983 8 1 2.9599 -3.2197 1.7462 9 6 4.0944 -3.6397 3.5050 10 7 4.9050 -3.1560 4.4205 11 14 3.5850 -5.4359 3.5633 12 1 2.3488 -5.5737 4.3744 13 1 3.3289 -5.9229 2.1839 14 1 4.6723 -6.2391 4.1779 15 6 3.9999 -1.4491 0.0275 16 6 3.4893 -0.7267 -1.2215 17 7 2.0202 -0.6940 -1.1991 18 1 -0.3633 0.5131 0.8905 19 1 -0.3633 0.5146 -0.8895 20 1 -0.3633 -1.0276 -0.0005 21 1 3.1305 1.4420 -0.0005 22 1 1.6766 1.9565 -0.8896 23 1 1.6780 1.9560 0.8904 24 1 1.6544 -1.7416 1.2629 25 1 1.7023 -0.1926 2.1393 26 1 3.6483 -0.8532 3.3204 27 1 5.1292 -1.3093 2.4445 28 1 5.2348 -3.7308 5.1290 29 1 5.0899 -1.4491 0.0273 30 1 3.6359 -2.4765 0.0276 31 1 3.8277 -1.2565 -2.1120 32 1 3.8756 0.2925 -1.2355 33 1 1.6552 -0.2684 -2.0379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306879322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:35 Heat of formation + Delta-G solvation = -21.836390 kcal Electronic energy + Delta-G solvation = -13471.282181 eV Core-core repulsion = 11337.559977 eV Total energy + Delta-G solvation = -2133.722204 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49395 -36.56372 -34.36373 -33.38303 -29.30533 -28.16653 -27.99956 -26.18336 -23.79224 -22.12286 -19.74371 -18.45043 -17.15504 -16.56624 -16.14227 -15.95071 -15.48001 -14.89703 -14.55242 -14.08158 -13.74621 -13.49396 -13.04109 -12.90384 -12.73010 -12.66084 -12.37695 -12.31081 -12.12482 -11.86913 -11.79908 -11.58289 -11.13440 -10.63019 -9.33395 -8.98421 -8.17137 -6.37222 1.34648 1.34978 1.46364 2.35533 3.06578 3.29703 3.38002 3.95220 4.17476 4.23434 4.35791 4.53738 4.62590 4.71699 4.79510 4.90440 4.96580 5.01113 5.12176 5.17527 5.22220 5.25059 5.29646 5.33499 5.56225 5.71710 6.02770 6.14816 6.22200 6.52709 6.67479 6.84338 7.34054 8.84818 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047020 B = 0.010049 C = 0.009829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.346606 B = 2785.786911 C = 2847.979352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.110 3.890 3 C -0.160 4.160 4 C 0.078 3.922 5 N -0.537 5.537 6 C 0.199 3.801 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.273 1.273 13 H -0.270 1.270 14 H -0.278 1.278 15 C 0.063 3.937 16 C 0.068 3.932 17 N -0.685 5.685 18 H 0.065 0.935 19 H 0.077 0.923 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.014 0.986 25 H 0.056 0.944 26 H 0.001 0.999 27 H 0.007 0.993 28 H 0.266 0.734 29 H 0.059 0.941 30 H 0.018 0.982 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 6.156 -10.738 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.019 3.981 3 C -0.219 4.219 4 C -0.051 4.051 5 N -0.260 5.260 6 C 0.072 3.928 7 C -0.594 4.594 8 H 0.070 0.930 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.783 3.217 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.203 1.203 15 C -0.066 4.066 16 C -0.061 4.061 17 N -0.318 5.318 18 H 0.084 0.916 19 H 0.096 0.904 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.448 5.974 -10.331 13.564 hybrid contribution 0.094 -1.019 0.521 1.148 sum -6.353 4.955 -9.810 12.695 Atomic orbital electron populations 1.21737 0.92209 1.02066 1.02836 1.21018 0.95585 0.91988 0.89546 1.22280 1.01752 0.95833 1.02004 1.21959 0.88261 0.97813 0.97055 1.62603 1.08174 1.52304 1.02952 1.19398 0.94177 0.91635 0.87553 1.21942 1.29072 0.97194 1.11222 0.92973 1.25823 0.94772 1.03125 0.95081 1.70058 1.33649 1.37802 1.15028 0.85557 0.78138 0.79637 0.78380 1.19812 1.19492 1.20331 1.21958 0.98610 0.95737 0.90246 1.21964 0.88005 0.99288 0.96893 1.60613 1.08391 1.58034 1.04795 0.91633 0.90372 0.93089 0.92897 0.91324 0.92563 0.96780 0.92581 0.98078 0.97498 0.92543 0.92249 0.96374 0.89088 0.93696 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.75 71.98 0.63 -2.56 16 2 C 0.11 3.30 0.94 3.53 0.00 3.31 16 3 C -0.16 -4.28 8.11 71.98 0.58 -3.70 16 4 C 0.08 3.18 4.03 86.31 0.35 3.53 16 5 N -0.54 -24.15 4.23 -900.28 -3.81 -27.96 16 6 C 0.20 10.95 5.14 85.56 0.44 11.39 16 7 C -0.56 -32.07 7.66 25.60 0.20 -31.88 16 8 H 0.05 3.03 5.82 -2.92 -0.02 3.02 16 9 C 0.01 0.66 5.46 84.66 0.46 1.12 16 10 N -0.93 -56.27 13.28 21.45 0.28 -55.98 16 11 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 C 0.06 2.60 5.24 86.31 0.45 3.05 16 16 C 0.07 2.06 6.34 86.31 0.55 2.61 16 17 N -0.69 -19.68 6.34 -469.71 -2.98 -22.66 16 18 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 19 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.05 1.62 5.94 -2.39 -0.01 1.61 16 22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.01 0.65 6.78 -2.39 -0.02 0.63 16 25 H 0.06 2.32 8.12 -2.38 -0.02 2.30 16 26 H 0.00 0.06 8.12 -2.39 -0.02 0.04 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.02 0.84 6.62 -2.39 -0.02 0.83 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.04 1.30 6.35 -2.39 -0.02 1.28 16 33 H 0.35 7.78 8.81 -89.70 -0.79 6.99 16 Total: -1.00 -64.06 256.39 -0.53 -64.59 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.29 Total: 7.90 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 3.66 Total: -13.13 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -6.51 Total: -106.60 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.06 -0.53 -64.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306879322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.757 kcal (2) G-P(sol) polarization free energy of solvation -64.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds