Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.45174 * 2 1 4 4 C 1.53041 * 109.45963 * 240.02649 * 2 1 3 5 5 H 1.08994 * 109.53716 * 300.76544 * 4 2 1 6 6 N 1.46899 * 109.49900 * 60.86508 * 4 2 1 7 7 C 1.53119 * 109.27769 * 180.80165 * 4 2 1 8 8 C 1.53121 * 109.15914 * 57.65747 * 7 4 2 9 9 C 1.53040 * 109.27937 * 302.34798 * 8 7 4 10 10 N 1.46844 * 109.46046 * 119.97932 * 2 1 3 11 11 C 1.46904 * 110.99948 * 305.84975 * 10 2 1 12 12 C 1.50700 * 109.47191 * 301.84164 * 11 10 2 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 H 1.08996 * 109.46737 * 300.02113 * 1 2 3 21 21 H 1.09000 * 109.47132 * 60.02337 * 1 2 3 22 22 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.00902 * 110.99731 * 179.80116 * 6 4 2 24 24 H 1.00896 * 111.00331 * 303.74800 * 6 4 2 25 25 H 1.09003 * 109.52177 * 297.75242 * 7 4 2 26 26 H 1.08998 * 109.57386 * 177.59294 * 7 4 2 27 27 H 1.08998 * 109.50724 * 182.40665 * 8 7 4 28 28 H 1.09004 * 109.53428 * 62.30391 * 8 7 4 29 29 H 1.09006 * 109.46153 * 299.16320 * 9 8 7 30 30 H 1.08994 * 109.45697 * 179.19143 * 9 8 7 31 31 H 1.08994 * 109.47225 * 181.84392 * 11 10 2 32 32 H 1.08998 * 109.47151 * 61.84216 * 11 10 2 33 33 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 1 1.6659 -1.7447 -1.2584 6 7 1.5676 -0.0163 -2.4493 7 6 3.5709 -0.7360 -1.2357 8 6 4.0548 -1.4188 0.0466 9 6 3.4865 -0.6778 1.2590 10 7 2.0193 -0.6918 1.1993 11 6 1.4373 -0.1107 2.4165 12 6 1.7793 1.3554 2.4863 13 1 2.3695 1.8100 1.7044 14 6 1.3378 2.1165 3.5478 15 7 0.6187 1.5630 4.4997 16 14 1.7611 3.9339 3.6340 17 1 1.1719 4.5215 4.8638 18 1 3.2367 4.0975 3.6645 19 1 1.2106 4.6274 2.4418 20 1 -0.3633 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8902 22 1 -0.3633 -1.0277 0.0005 23 1 1.8942 -0.4718 -3.2884 24 1 0.5618 0.0633 -2.4494 25 1 3.9456 0.2871 -1.2673 26 1 3.9388 -1.2856 -2.1022 27 1 5.1439 -1.3947 0.0830 28 1 3.7131 -2.4538 0.0596 29 1 3.8403 0.3532 1.2531 30 1 3.8175 -1.1701 2.1733 31 1 1.8414 -0.6200 3.2914 32 1 0.3542 -0.2304 2.3944 33 1 0.3986 0.6193 4.4547 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306998374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = -11.752499 kcal Electronic energy + Delta-G solvation = -13549.739077 eV Core-core repulsion = 11416.454143 eV Total energy + Delta-G solvation = -2133.284933 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85671 -34.64112 -33.01507 -32.03707 -29.06860 -26.45468 -25.70347 -23.45487 -21.20060 -20.68646 -19.00479 -16.63503 -15.69231 -15.13032 -14.51897 -14.24438 -13.86992 -13.66654 -13.12679 -12.47061 -12.25655 -11.75544 -11.68834 -11.26914 -10.98344 -10.93968 -10.54863 -10.43906 -10.28660 -10.10064 -9.96589 -9.42585 -9.11451 -8.42651 -8.34677 -7.07228 -6.35658 -4.09169 3.43308 3.44340 3.62990 4.53262 4.60916 5.06533 5.23474 5.33311 5.38267 5.51976 5.70835 5.92709 5.96609 6.17396 6.19480 6.22662 6.34180 6.39203 6.54101 6.59645 6.79170 6.92694 6.97073 7.07966 7.29445 7.41803 7.64741 7.93317 8.16896 8.25191 8.54292 8.82697 9.63666 11.01174 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039855 B = 0.011207 C = 0.010735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.377137 B = 2497.825880 C = 2607.684407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.099 3.901 3 H 0.054 0.946 4 C 0.096 3.904 5 H 0.034 0.966 6 N -0.848 5.848 7 C -0.110 4.110 8 C -0.116 4.116 9 C 0.063 3.937 10 N -0.535 5.535 11 C 0.174 3.826 12 C -0.624 4.624 13 H 0.050 0.950 14 C 0.022 3.978 15 N -0.910 5.910 16 Si 1.063 2.937 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.288 1.288 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.333 0.667 24 H 0.340 0.660 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.026 0.974 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -4.382 -10.432 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.010 4.010 3 H 0.072 0.928 4 C -0.015 4.015 5 H 0.052 0.948 6 N -0.379 5.379 7 C -0.148 4.148 8 C -0.154 4.154 9 C -0.066 4.066 10 N -0.259 5.259 11 C 0.049 3.951 12 C -0.663 4.663 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.546 5.546 16 Si 0.892 3.108 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.214 1.214 20 H 0.092 0.908 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.145 0.855 24 H 0.154 0.846 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.134 -2.891 -9.252 10.187 hybrid contribution 0.004 -1.384 -1.091 1.762 sum 3.138 -4.275 -10.343 11.623 Atomic orbital electron populations 1.21839 0.95562 1.00691 1.01935 1.21262 0.94607 0.96502 0.88624 0.92768 1.21406 0.94736 0.94993 0.90366 0.94760 1.58717 1.16776 1.58340 1.04018 1.21555 0.95031 1.01017 0.97162 1.21605 0.99111 0.99802 0.94896 1.21855 0.89331 0.98822 0.96557 1.62346 1.05942 1.54251 1.03382 1.19864 0.95030 0.93424 0.86829 1.22530 1.37681 0.95690 1.10437 0.93138 1.25728 0.94102 1.05967 0.92516 1.70799 1.35517 1.14643 1.33639 0.83621 0.76102 0.74957 0.76152 1.20758 1.21540 1.21446 0.90850 0.93443 0.93633 0.85511 0.84596 0.91650 0.93051 0.92229 0.92015 0.94356 0.91913 0.96430 0.95563 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.45 37.16 0.31 -2.42 16 2 C 0.10 2.01 1.70 -67.72 -0.12 1.89 16 3 H 0.05 1.28 6.57 -51.93 -0.34 0.94 16 4 C 0.10 1.59 2.92 -67.63 -0.20 1.39 16 5 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 6 N -0.85 -12.01 9.23 -4.60 -0.04 -12.05 16 7 C -0.11 -1.71 5.58 -26.61 -0.15 -1.86 16 8 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 9 C 0.06 1.27 5.14 -3.83 -0.02 1.25 16 10 N -0.53 -11.73 4.69 -228.12 -1.07 -12.80 16 11 C 0.17 4.49 3.89 -4.97 -0.02 4.48 16 12 C -0.62 -17.42 7.58 -34.44 -0.26 -17.68 16 13 H 0.05 1.44 5.84 -52.49 -0.31 1.13 16 14 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 15 N -0.91 -27.57 13.65 55.43 0.76 -26.81 16 16 Si 1.06 25.53 29.90 -169.99 -5.08 20.45 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H 0.07 1.63 6.24 -51.93 -0.32 1.31 16 21 H 0.05 0.79 6.59 -51.93 -0.34 0.44 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.33 3.87 9.04 -39.29 -0.36 3.51 16 24 H 0.34 4.52 7.08 -39.29 -0.28 4.24 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.85 7.03 -51.93 -0.37 0.49 16 30 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 31 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 32 H 0.03 0.71 6.19 -51.93 -0.32 0.39 16 33 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 LS Contribution 252.24 15.07 3.80 3.80 Total: -1.00 -29.72 252.24 -7.44 -37.16 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.09 Total: 4.69 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.71 Total: -14.44 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.36 Total: -51.66 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.72 -7.44 -37.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306998374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.403 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds