Wall clock time and date at job start Mon Mar 30 2020 02:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.45174 * 2 1 4 4 C 1.53041 * 109.45963 * 240.02649 * 2 1 3 5 5 H 1.08994 * 109.53716 * 300.76544 * 4 2 1 6 6 N 1.46899 * 109.49900 * 60.86508 * 4 2 1 7 7 C 1.53119 * 109.27769 * 180.80165 * 4 2 1 8 8 C 1.53121 * 109.15914 * 57.65747 * 7 4 2 9 9 C 1.53040 * 109.27937 * 302.34798 * 8 7 4 10 10 N 1.46844 * 109.46046 * 119.97932 * 2 1 3 11 11 C 1.46904 * 110.99948 * 305.84975 * 10 2 1 12 12 C 1.50700 * 109.47191 * 301.84164 * 11 10 2 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 H 1.08996 * 109.46737 * 300.02113 * 1 2 3 21 21 H 1.09000 * 109.47132 * 60.02337 * 1 2 3 22 22 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.00902 * 110.99731 * 179.80116 * 6 4 2 24 24 H 1.00896 * 111.00331 * 303.74800 * 6 4 2 25 25 H 1.09003 * 109.52177 * 297.75242 * 7 4 2 26 26 H 1.08998 * 109.57386 * 177.59294 * 7 4 2 27 27 H 1.08998 * 109.50724 * 182.40665 * 8 7 4 28 28 H 1.09004 * 109.53428 * 62.30391 * 8 7 4 29 29 H 1.09006 * 109.46153 * 299.16320 * 9 8 7 30 30 H 1.08994 * 109.45697 * 179.19143 * 9 8 7 31 31 H 1.08994 * 109.47225 * 181.84392 * 11 10 2 32 32 H 1.08998 * 109.47151 * 61.84216 * 11 10 2 33 33 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 1 1.6659 -1.7447 -1.2584 6 7 1.5676 -0.0163 -2.4493 7 6 3.5709 -0.7360 -1.2357 8 6 4.0548 -1.4188 0.0466 9 6 3.4865 -0.6778 1.2590 10 7 2.0193 -0.6918 1.1993 11 6 1.4373 -0.1107 2.4165 12 6 1.7793 1.3554 2.4863 13 1 2.3695 1.8100 1.7044 14 6 1.3378 2.1165 3.5478 15 7 0.6187 1.5630 4.4997 16 14 1.7611 3.9339 3.6340 17 1 1.1719 4.5215 4.8638 18 1 3.2367 4.0975 3.6645 19 1 1.2106 4.6274 2.4418 20 1 -0.3633 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8902 22 1 -0.3633 -1.0277 0.0005 23 1 1.8942 -0.4718 -3.2884 24 1 0.5618 0.0633 -2.4494 25 1 3.9456 0.2871 -1.2673 26 1 3.9388 -1.2856 -2.1022 27 1 5.1439 -1.3947 0.0830 28 1 3.7131 -2.4538 0.0596 29 1 3.8403 0.3532 1.2531 30 1 3.8175 -1.1701 2.1733 31 1 1.8414 -0.6200 3.2914 32 1 0.3542 -0.2304 2.3944 33 1 0.3986 0.6193 4.4547 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306998374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:06 Heat of formation + Delta-G solvation = -34.322547 kcal Electronic energy + Delta-G solvation = -13550.717787 eV Core-core repulsion = 11416.454143 eV Total energy + Delta-G solvation = -2134.263644 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44061 -36.34537 -34.67253 -33.81909 -30.59160 -28.23990 -27.36224 -25.45570 -22.82364 -22.22292 -20.64147 -18.69034 -17.09419 -16.74013 -16.01833 -15.68104 -15.64748 -15.58476 -14.66631 -14.16433 -14.02549 -13.29417 -13.18145 -12.91999 -12.88479 -12.72467 -12.32865 -12.12067 -11.97583 -11.75758 -11.46681 -11.25121 -10.94324 -10.57146 -9.58371 -9.01825 -8.62771 -6.41298 1.46946 1.53972 1.73775 2.51281 3.11731 3.13661 3.68465 3.87192 3.94670 4.14545 4.24372 4.47720 4.51867 4.63981 4.71960 4.82770 4.85491 4.99424 5.03283 5.05292 5.11423 5.21400 5.25155 5.33112 5.44456 5.84934 5.98416 6.20675 6.43094 6.49444 6.52553 6.68086 7.39902 8.69456 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039855 B = 0.011207 C = 0.010735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.377137 B = 2497.825880 C = 2607.684407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.098 3.902 3 H 0.017 0.983 4 C 0.106 3.894 5 H 0.042 0.958 6 N -0.849 5.849 7 C -0.107 4.107 8 C -0.105 4.105 9 C 0.060 3.940 10 N -0.532 5.532 11 C 0.185 3.815 12 C -0.624 4.624 13 H 0.042 0.958 14 C -0.029 4.029 15 N -0.933 5.933 16 Si 1.109 2.891 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.273 1.273 20 H 0.033 0.967 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.353 0.647 24 H 0.346 0.654 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.011 0.989 30 H 0.054 0.946 31 H -0.006 1.006 32 H 0.011 0.989 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -4.602 -12.527 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.011 4.011 3 H 0.035 0.965 4 C -0.005 4.005 5 H 0.060 0.940 6 N -0.383 5.383 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.069 4.069 10 N -0.256 5.256 11 C 0.058 3.942 12 C -0.663 4.663 13 H 0.060 0.940 14 C -0.228 4.228 15 N -0.570 5.570 16 Si 0.931 3.069 17 H -0.206 1.206 18 H -0.199 1.199 19 H -0.199 1.199 20 H 0.052 0.948 21 H 0.093 0.907 22 H 0.076 0.924 23 H 0.167 0.833 24 H 0.160 0.840 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.012 0.988 32 H 0.029 0.971 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.990 -3.137 -11.384 12.464 hybrid contribution -0.264 -1.355 -0.471 1.459 sum 3.726 -4.492 -11.855 13.214 Atomic orbital electron populations 1.21767 0.95033 1.01252 1.01311 1.21333 0.95141 0.94882 0.89736 0.96539 1.21213 0.95460 0.94687 0.89175 0.93999 1.58621 1.17358 1.58321 1.03970 1.21560 0.94170 1.00672 0.98140 1.21557 1.00467 0.99544 0.92796 1.21954 0.88169 0.97927 0.98826 1.62353 1.07082 1.53622 1.02566 1.19577 0.94142 0.92446 0.88050 1.22715 1.36863 0.96774 1.09904 0.93975 1.27154 0.93486 1.09971 0.92167 1.70921 1.37264 1.14073 1.34747 0.83029 0.76845 0.70357 0.76673 1.20571 1.19865 1.19865 0.94807 0.90707 0.92398 0.83303 0.83951 0.93110 0.89506 0.89672 0.90849 0.97053 0.92705 0.98763 0.97128 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.45 71.98 0.61 -4.57 16 2 C 0.10 3.93 1.70 44.94 0.08 4.01 16 3 H 0.02 0.79 6.57 -2.39 -0.02 0.77 16 4 C 0.11 3.23 2.92 44.97 0.13 3.36 16 5 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 6 N -0.85 -21.42 9.23 -168.46 -1.56 -22.98 16 7 C -0.11 -3.01 5.58 30.67 0.17 -2.84 16 8 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 9 C 0.06 2.41 5.14 86.33 0.44 2.85 16 10 N -0.53 -23.57 4.69 -875.63 -4.11 -27.68 16 11 C 0.18 9.90 3.89 85.56 0.33 10.23 16 12 C -0.62 -35.82 7.58 25.60 0.19 -35.63 16 13 H 0.04 2.46 5.84 -2.91 -0.02 2.44 16 14 C -0.03 -1.69 5.46 84.65 0.46 -1.23 16 15 N -0.93 -58.00 13.65 21.45 0.29 -57.70 16 16 Si 1.11 51.63 29.90 68.60 2.05 53.68 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H 0.03 1.53 6.24 -2.39 -0.01 1.52 16 21 H 0.07 2.38 6.59 -2.39 -0.02 2.36 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.35 6.77 9.04 -89.69 -0.81 5.96 16 24 H 0.35 8.14 7.08 -89.70 -0.63 7.50 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.01 0.51 7.03 -2.38 -0.02 0.49 16 30 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 31 H -0.01 -0.33 7.93 -2.39 -0.02 -0.35 16 32 H 0.01 0.61 6.19 -2.39 -0.01 0.59 16 33 H 0.26 16.12 7.22 -92.70 -0.67 15.46 16 Total: -1.00 -65.46 252.24 -0.96 -66.42 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.24 Total: 14.99 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 2.61 Total: -26.72 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -5.37 Total: -108.36 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Total: -65.46 -0.96 -66.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306998374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.099 kcal (2) G-P(sol) polarization free energy of solvation -65.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds