Wall clock time and date at job start Mon Mar 30 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46161 * 2 1 4 4 C 1.53034 * 109.45712 * 119.97241 * 2 1 3 5 5 H 1.09001 * 109.50099 * 59.24988 * 4 2 1 6 6 N 1.46898 * 109.50364 * 299.13627 * 4 2 1 7 7 C 1.53120 * 109.28121 * 179.19247 * 4 2 1 8 8 C 1.53123 * 109.15838 * 302.34741 * 7 4 2 9 9 C 1.53034 * 109.27922 * 57.65133 * 8 7 4 10 10 N 1.46843 * 109.52557 * 300.82047 * 9 8 7 11 11 C 1.46902 * 111.00070 * 185.83614 * 10 9 8 12 12 C 1.50701 * 109.47394 * 299.66206 * 11 10 9 13 13 H 1.08001 * 119.99824 * 3.27327 * 12 11 10 14 14 C 1.37871 * 120.00126 * 183.26423 * 12 11 10 15 15 N 1.31509 * 120.00064 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00007 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46788 * 60.00767 * 16 14 12 18 18 H 1.48504 * 109.47051 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47477 * 300.00522 * 16 14 12 20 20 H 1.09002 * 109.46978 * 172.03861 * 1 2 3 21 21 H 1.09002 * 109.47364 * 292.03604 * 1 2 3 22 22 H 1.08991 * 109.47273 * 52.04220 * 1 2 3 23 23 H 1.00902 * 110.99948 * 179.97438 * 6 4 2 24 24 H 1.00904 * 110.99925 * 303.94460 * 6 4 2 25 25 H 1.09001 * 109.52255 * 182.44541 * 7 4 2 26 26 H 1.08999 * 109.57373 * 62.27754 * 7 4 2 27 27 H 1.09002 * 109.50539 * 297.71304 * 8 7 4 28 28 H 1.09000 * 109.53824 * 177.61222 * 8 7 4 29 29 H 1.09003 * 109.46585 * 180.80004 * 9 8 7 30 30 H 1.09006 * 109.45957 * 60.83680 * 9 8 7 31 31 H 1.08999 * 109.47239 * 59.66295 * 11 10 9 32 32 H 1.08998 * 109.47094 * 179.66083 * 11 10 9 33 33 H 0.97007 * 120.00561 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 1.2500 5 1 1.6656 -1.7446 1.2576 6 7 1.5674 -0.0164 2.4493 7 6 3.5708 -0.7362 1.2358 8 6 4.0546 -1.4190 -0.0465 9 6 3.4865 -0.6779 -1.2589 10 7 2.0193 -0.6918 -1.1994 11 6 1.4375 -0.1105 -2.4166 12 6 1.8949 1.3183 -2.5592 13 1 2.5937 1.7350 -1.8490 14 6 1.4215 2.0934 -3.5965 15 7 0.5703 1.5860 -4.4611 16 14 1.9880 3.8646 -3.7729 17 1 3.4626 3.8979 -3.9445 18 1 1.3373 4.4766 -4.9593 19 1 1.6139 4.6277 -2.5551 20 1 -0.3633 -1.0178 -0.1423 21 1 -0.3634 0.3856 0.9526 22 1 -0.3633 0.6320 -0.8102 23 1 1.8910 -0.4739 3.2884 24 1 1.8490 0.9525 2.4340 25 1 3.9376 -1.2865 2.1022 26 1 3.9465 0.2865 1.2678 27 1 3.7122 -2.4538 -0.0593 28 1 5.1438 -1.3956 -0.0833 29 1 3.8175 -1.1701 -2.1734 30 1 3.8405 0.3531 -1.2530 31 1 1.7623 -0.6844 -3.2844 32 1 0.3499 -0.1388 -2.3487 33 1 0.2368 2.1315 -5.1908 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306998375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:09 Heat of formation + Delta-G solvation = -31.374257 kcal Electronic energy + Delta-G solvation = -13515.791212 eV Core-core repulsion = 11381.655416 eV Total energy + Delta-G solvation = -2134.135797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.34359 -36.16783 -34.45901 -33.72905 -30.67317 -28.49379 -27.14409 -25.41781 -22.67155 -22.06213 -20.69432 -18.39588 -16.99586 -16.91074 -16.11508 -15.69640 -15.28966 -15.10778 -14.60037 -14.41747 -13.71297 -13.26214 -13.06519 -12.97024 -12.76051 -12.60723 -12.35676 -12.16270 -11.86740 -11.79604 -11.65444 -11.58563 -10.90234 -10.58323 -9.47066 -8.98722 -8.14322 -6.34307 1.34408 1.35824 1.43894 2.35946 3.09413 3.26051 3.79998 3.95369 4.02471 4.17516 4.33735 4.55627 4.63223 4.74918 4.82872 4.89047 5.02804 5.06538 5.13431 5.23222 5.29647 5.35569 5.37829 5.45629 5.51877 5.77417 6.08345 6.26198 6.31661 6.64295 6.72112 6.87466 7.36650 8.87161 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040257 B = 0.011067 C = 0.010659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.364519 B = 2529.438068 C = 2626.222590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.101 3.899 3 H 0.013 0.987 4 C 0.107 3.893 5 H 0.081 0.919 6 N -0.841 5.841 7 C -0.145 4.145 8 C -0.105 4.105 9 C 0.060 3.940 10 N -0.537 5.537 11 C 0.198 3.802 12 C -0.553 4.553 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.271 1.271 20 H 0.048 0.952 21 H 0.076 0.924 22 H 0.025 0.975 23 H 0.353 0.647 24 H 0.340 0.660 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.014 0.986 31 H -0.003 1.003 32 H 0.017 0.983 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 -3.179 11.905 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.008 4.008 3 H 0.031 0.969 4 C -0.005 4.005 5 H 0.099 0.901 6 N -0.371 5.371 7 C -0.184 4.184 8 C -0.144 4.144 9 C -0.068 4.068 10 N -0.262 5.262 11 C 0.071 3.929 12 C -0.592 4.592 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.565 5.565 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.196 1.196 20 H 0.067 0.933 21 H 0.095 0.905 22 H 0.044 0.956 23 H 0.167 0.833 24 H 0.153 0.847 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.015 0.985 32 H 0.035 0.965 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.443 -3.819 11.532 12.935 hybrid contribution 1.312 2.029 -0.712 2.519 sum 5.755 -1.790 10.821 12.386 Atomic orbital electron populations 1.21615 0.94898 1.00672 1.00890 1.21308 0.95423 0.94244 0.89860 0.96896 1.21321 0.92225 0.97879 0.89094 0.90116 1.58767 1.67589 1.06796 1.03942 1.22378 0.96873 1.00592 0.98583 1.21517 1.00124 0.99677 0.93047 1.21939 0.88381 0.97911 0.98616 1.62383 1.06914 1.53982 1.02906 1.19444 0.94716 0.91593 0.87101 1.21896 1.26771 0.99015 1.11479 0.93066 1.25788 0.94962 1.02572 0.95410 1.70054 1.32297 1.38344 1.15804 0.85674 0.78656 0.80014 0.77762 1.19566 1.20580 1.19579 0.93279 0.90500 0.95607 0.83314 0.84714 0.89576 0.93101 0.91006 0.90248 0.92801 0.96791 0.98465 0.96458 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 8.44 71.98 0.61 -4.33 16 2 C 0.10 3.97 1.73 44.94 0.08 4.05 16 3 H 0.01 0.58 6.96 -2.39 -0.02 0.56 16 4 C 0.11 3.15 2.84 44.97 0.13 3.28 16 5 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 6 N -0.84 -20.38 8.40 -168.46 -1.41 -21.80 16 7 C -0.14 -3.73 5.57 30.68 0.17 -3.56 16 8 C -0.11 -3.02 6.09 30.65 0.19 -2.84 16 9 C 0.06 2.37 5.05 86.33 0.44 2.80 16 10 N -0.54 -23.70 4.69 -875.65 -4.11 -27.81 16 11 C 0.20 10.73 4.70 85.56 0.40 11.13 16 12 C -0.55 -31.31 7.73 25.60 0.20 -31.11 16 13 H 0.05 2.88 5.85 -2.91 -0.02 2.86 16 14 C 0.01 0.69 5.46 84.65 0.46 1.15 16 15 N -0.93 -56.00 13.29 21.44 0.28 -55.71 16 16 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 20 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 21 H 0.08 2.72 7.40 -2.39 -0.02 2.71 16 22 H 0.02 1.18 6.73 -2.39 -0.02 1.17 16 23 H 0.35 6.48 9.04 -89.69 -0.81 5.67 16 24 H 0.34 8.09 8.98 -89.69 -0.81 7.28 16 25 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 2.19 8.12 -2.39 -0.02 2.17 16 30 H 0.01 0.60 6.63 -2.38 -0.02 0.59 16 31 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.02 1.01 6.16 -2.39 -0.01 1.00 16 33 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -62.83 256.03 -1.06 -63.90 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -0.52 Total: 14.20 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 2.67 Total: -19.43 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -5.24 Total: -105.32 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.83 -1.06 -63.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306998375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.523 kcal (2) G-P(sol) polarization free energy of solvation -62.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds