Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.45395 * 2 1 4 4 C 1.53040 * 109.45887 * 240.03487 * 2 1 3 5 5 H 1.09001 * 109.53974 * 60.83612 * 4 2 1 6 6 N 1.46902 * 109.50190 * 300.74433 * 4 2 1 7 7 C 1.53111 * 109.27832 * 180.80374 * 4 2 1 8 8 C 1.53120 * 109.16356 * 57.65249 * 7 4 2 9 9 C 1.53040 * 109.27721 * 302.34829 * 8 7 4 10 10 N 1.46840 * 109.52568 * 59.17513 * 9 8 7 11 11 C 1.46895 * 111.00229 * 174.16075 * 10 9 8 12 12 C 1.50706 * 109.47182 * 66.04782 * 11 10 9 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 H 1.09000 * 109.46424 * 300.01674 * 1 2 3 21 21 H 1.08992 * 109.47373 * 60.01682 * 1 2 3 22 22 H 1.08997 * 109.47049 * 180.02562 * 1 2 3 23 23 H 1.00901 * 111.00217 * 180.19989 * 6 4 2 24 24 H 1.00903 * 110.99780 * 304.14973 * 6 4 2 25 25 H 1.09001 * 109.52362 * 297.74813 * 7 4 2 26 26 H 1.09002 * 109.52566 * 177.55582 * 7 4 2 27 27 H 1.09003 * 109.50695 * 182.40901 * 8 7 4 28 28 H 1.09002 * 109.53444 * 62.30397 * 8 7 4 29 29 H 1.09002 * 109.45969 * 299.16196 * 9 8 7 30 30 H 1.08997 * 109.45280 * 179.19072 * 9 8 7 31 31 H 1.09001 * 109.47613 * 306.05128 * 11 10 9 32 32 H 1.09006 * 109.47521 * 186.04746 * 11 10 9 33 33 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2501 5 1 1.6893 -0.1986 -2.1404 6 7 1.5358 -2.1005 -1.2606 7 6 3.5708 -0.7359 -1.2358 8 6 4.0548 -1.4188 0.0464 9 6 3.4865 -0.6778 1.2589 10 7 2.0194 -0.6918 1.1993 11 6 1.4375 -0.1108 2.4165 12 6 1.7794 1.3553 2.4864 13 1 2.3697 1.8100 1.7045 14 6 1.3388 2.1160 3.5485 15 7 0.6205 1.5623 4.5008 16 14 1.7633 3.9331 3.6354 17 1 1.1750 4.5205 4.8659 18 1 3.2391 4.0958 3.6654 19 1 1.2127 4.6276 2.4438 20 1 -0.3632 0.5141 0.8899 21 1 -0.3634 0.5135 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8617 -2.5984 -2.0754 24 1 1.7923 -2.5856 -0.4138 25 1 3.9456 0.2872 -1.2674 26 1 3.9378 -1.2861 -2.1023 27 1 5.1440 -1.3946 0.0828 28 1 3.7130 -2.4538 0.0594 29 1 3.8404 0.3532 1.2530 30 1 3.8176 -1.1702 2.1731 31 1 1.8415 -0.6202 3.2914 32 1 0.3542 -0.2306 2.3944 33 1 0.4004 0.6186 4.4558 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306998377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = -11.435607 kcal Electronic energy + Delta-G solvation = -13652.312302 eV Core-core repulsion = 11519.041111 eV Total energy + Delta-G solvation = -2133.271192 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04371 -34.58968 -32.46373 -32.05686 -29.10443 -26.50767 -25.61456 -23.52681 -21.68072 -20.62827 -18.54156 -16.51891 -15.97458 -14.86368 -14.43094 -14.03748 -13.87175 -13.68520 -13.38522 -12.32887 -12.17178 -11.90080 -11.46370 -11.24582 -11.00175 -10.94492 -10.62232 -10.56426 -10.24989 -10.10732 -9.88291 -9.44496 -9.13164 -8.35612 -8.21636 -7.07200 -6.36212 -4.09819 3.40958 3.42004 3.60806 4.51762 4.84468 5.09119 5.17071 5.25897 5.36795 5.39061 5.70532 5.91075 6.00777 6.10060 6.16454 6.25327 6.30844 6.39444 6.53692 6.67948 6.73650 6.96890 7.05395 7.18031 7.32643 7.59232 7.92655 7.93421 8.15656 8.25471 8.53328 8.81965 9.63113 11.00679 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046031 B = 0.011103 C = 0.010635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.143850 B = 2521.170524 C = 2632.068638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.099 3.901 3 H 0.045 0.955 4 C 0.097 3.903 5 H 0.071 0.929 6 N -0.834 5.834 7 C -0.154 4.154 8 C -0.117 4.117 9 C 0.061 3.939 10 N -0.529 5.529 11 C 0.174 3.826 12 C -0.625 4.625 13 H 0.049 0.951 14 C 0.022 3.978 15 N -0.909 5.909 16 Si 1.063 2.937 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.289 1.289 20 H 0.063 0.937 21 H 0.038 0.962 22 H 0.061 0.939 23 H 0.324 0.676 24 H 0.351 0.649 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.016 0.984 32 H 0.029 0.971 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.501 -4.377 -9.809 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.011 4.011 3 H 0.063 0.937 4 C -0.015 4.015 5 H 0.089 0.911 6 N -0.363 5.363 7 C -0.194 4.194 8 C -0.155 4.155 9 C -0.067 4.067 10 N -0.254 5.254 11 C 0.049 3.951 12 C -0.664 4.664 13 H 0.067 0.933 14 C -0.183 4.183 15 N -0.545 5.545 16 Si 0.892 3.108 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.215 1.215 20 H 0.081 0.919 21 H 0.057 0.943 22 H 0.080 0.920 23 H 0.135 0.865 24 H 0.166 0.834 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.407 -3.171 -8.928 10.069 hybrid contribution 1.665 -0.670 -0.841 1.982 sum 5.071 -3.841 -9.770 11.658 Atomic orbital electron populations 1.21665 0.94559 1.01845 1.00721 1.21364 0.95722 0.95103 0.88873 0.93700 1.21541 0.90909 0.90771 0.98294 0.91106 1.58869 1.66665 1.03296 1.07520 1.22391 0.98593 1.00985 0.97432 1.21617 0.99135 0.99613 0.95152 1.21866 0.89793 0.98718 0.96369 1.62327 1.05314 1.54201 1.03521 1.19863 0.95224 0.93253 0.86805 1.22513 1.37706 0.95802 1.10361 0.93328 1.25713 0.94144 1.05917 0.92559 1.70789 1.35430 1.14700 1.33593 0.83624 0.76010 0.75024 0.76181 1.20714 1.21623 1.21509 0.91855 0.94258 0.91986 0.86521 0.83371 0.92080 0.92901 0.92510 0.92209 0.94501 0.91958 0.96596 0.95318 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.60 37.16 0.32 -2.28 16 2 C 0.10 1.96 1.76 -67.72 -0.12 1.84 16 3 H 0.05 1.01 6.57 -51.93 -0.34 0.67 16 4 C 0.10 1.55 3.16 -67.63 -0.21 1.34 16 5 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 6 N -0.83 -12.30 8.38 -4.60 -0.04 -12.34 16 7 C -0.15 -2.25 5.67 -26.61 -0.15 -2.40 16 8 C -0.12 -1.79 5.76 -26.65 -0.15 -1.95 16 9 C 0.06 1.20 5.14 -3.84 -0.02 1.18 16 10 N -0.53 -11.21 3.99 -228.12 -0.91 -12.12 16 11 C 0.17 4.45 3.89 -4.98 -0.02 4.43 16 12 C -0.62 -17.25 7.58 -34.44 -0.26 -17.51 16 13 H 0.05 1.36 5.84 -52.48 -0.31 1.05 16 14 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 15 N -0.91 -27.49 13.65 55.43 0.76 -26.73 16 16 Si 1.06 25.33 29.90 -169.99 -5.08 20.24 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H 0.06 1.44 6.24 -51.93 -0.32 1.12 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 1.22 7.59 -51.93 -0.39 0.82 16 23 H 0.32 3.95 9.04 -39.29 -0.36 3.60 16 24 H 0.35 5.52 6.76 -39.29 -0.27 5.25 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.87 6.90 -51.93 -0.36 0.52 16 29 H 0.04 0.80 7.03 -51.93 -0.37 0.43 16 30 H 0.06 1.23 8.06 -51.93 -0.42 0.82 16 31 H 0.02 0.43 7.93 -51.93 -0.41 0.02 16 32 H 0.03 0.78 6.19 -51.93 -0.32 0.45 16 33 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 LS Contribution 250.34 15.07 3.77 3.77 Total: -1.00 -28.89 250.34 -7.28 -36.17 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.07 Total: 5.84 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.72 Total: -14.83 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.19 Total: -51.19 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.89 -7.28 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306998377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.734 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds