Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.45395 * 2 1 4 4 C 1.53040 * 109.45887 * 240.03487 * 2 1 3 5 5 H 1.09001 * 109.53974 * 60.83612 * 4 2 1 6 6 N 1.46902 * 109.50190 * 300.74433 * 4 2 1 7 7 C 1.53111 * 109.27832 * 180.80374 * 4 2 1 8 8 C 1.53120 * 109.16356 * 57.65249 * 7 4 2 9 9 C 1.53040 * 109.27721 * 302.34829 * 8 7 4 10 10 N 1.46840 * 109.52568 * 59.17513 * 9 8 7 11 11 C 1.46895 * 111.00229 * 174.16075 * 10 9 8 12 12 C 1.50706 * 109.47182 * 66.04782 * 11 10 9 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 H 1.09000 * 109.46424 * 300.01674 * 1 2 3 21 21 H 1.08992 * 109.47373 * 60.01682 * 1 2 3 22 22 H 1.08997 * 109.47049 * 180.02562 * 1 2 3 23 23 H 1.00901 * 111.00217 * 180.19989 * 6 4 2 24 24 H 1.00903 * 110.99780 * 304.14973 * 6 4 2 25 25 H 1.09001 * 109.52362 * 297.74813 * 7 4 2 26 26 H 1.09002 * 109.52566 * 177.55582 * 7 4 2 27 27 H 1.09003 * 109.50695 * 182.40901 * 8 7 4 28 28 H 1.09002 * 109.53444 * 62.30397 * 8 7 4 29 29 H 1.09002 * 109.45969 * 299.16196 * 9 8 7 30 30 H 1.08997 * 109.45280 * 179.19072 * 9 8 7 31 31 H 1.09001 * 109.47613 * 306.05128 * 11 10 9 32 32 H 1.09006 * 109.47521 * 186.04746 * 11 10 9 33 33 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2501 5 1 1.6893 -0.1986 -2.1404 6 7 1.5358 -2.1005 -1.2606 7 6 3.5708 -0.7359 -1.2358 8 6 4.0548 -1.4188 0.0464 9 6 3.4865 -0.6778 1.2589 10 7 2.0194 -0.6918 1.1993 11 6 1.4375 -0.1108 2.4165 12 6 1.7794 1.3553 2.4864 13 1 2.3697 1.8100 1.7045 14 6 1.3388 2.1160 3.5485 15 7 0.6205 1.5623 4.5008 16 14 1.7633 3.9331 3.6354 17 1 1.1750 4.5205 4.8659 18 1 3.2391 4.0958 3.6654 19 1 1.2127 4.6276 2.4438 20 1 -0.3632 0.5141 0.8899 21 1 -0.3634 0.5135 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8617 -2.5984 -2.0754 24 1 1.7923 -2.5856 -0.4138 25 1 3.9456 0.2872 -1.2674 26 1 3.9378 -1.2861 -2.1023 27 1 5.1440 -1.3946 0.0828 28 1 3.7130 -2.4538 0.0594 29 1 3.8404 0.3532 1.2530 30 1 3.8176 -1.1702 2.1731 31 1 1.8415 -0.6202 3.2914 32 1 0.3542 -0.2306 2.3944 33 1 0.4004 0.6186 4.4558 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306998377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = -32.530606 kcal Electronic energy + Delta-G solvation = -13653.227050 eV Core-core repulsion = 11519.041111 eV Total energy + Delta-G solvation = -2134.185940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57678 -36.33547 -34.26211 -33.66743 -30.57574 -28.28398 -27.24928 -25.48177 -23.29727 -22.18484 -20.17407 -18.50927 -17.39322 -16.46248 -15.92249 -15.70521 -15.59361 -15.35207 -14.81648 -14.12282 -13.76763 -13.49570 -13.04234 -12.99130 -12.72120 -12.67001 -12.36130 -12.13501 -11.97916 -11.77192 -11.41828 -11.23274 -10.95440 -10.56476 -9.40516 -8.97445 -8.60927 -6.40530 1.46497 1.53729 1.73149 2.51639 3.13569 3.23551 3.78579 3.85690 4.00043 4.13170 4.25010 4.52875 4.56714 4.66571 4.75639 4.79955 4.91496 4.98488 4.99534 5.05486 5.13284 5.28102 5.30864 5.32562 5.48571 5.85152 5.98368 6.38070 6.45968 6.50946 6.54777 6.84267 7.41289 8.70274 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046031 B = 0.011103 C = 0.010635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.143850 B = 2521.170524 C = 2632.068638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.096 3.904 3 H 0.016 0.984 4 C 0.106 3.894 5 H 0.085 0.915 6 N -0.835 5.835 7 C -0.150 4.150 8 C -0.107 4.107 9 C 0.059 3.941 10 N -0.522 5.522 11 C 0.185 3.815 12 C -0.624 4.624 13 H 0.044 0.956 14 C -0.031 4.031 15 N -0.934 5.934 16 Si 1.109 2.891 17 H -0.282 1.282 18 H -0.273 1.273 19 H -0.272 1.272 20 H 0.024 0.976 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.344 0.656 24 H 0.346 0.654 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.052 0.948 31 H -0.008 1.008 32 H 0.009 0.991 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.643 -4.565 -11.939 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.013 4.013 3 H 0.034 0.966 4 C -0.007 4.007 5 H 0.103 0.897 6 N -0.366 5.366 7 C -0.189 4.189 8 C -0.145 4.145 9 C -0.070 4.070 10 N -0.246 5.246 11 C 0.058 3.942 12 C -0.662 4.662 13 H 0.062 0.938 14 C -0.229 4.229 15 N -0.571 5.571 16 Si 0.931 3.069 17 H -0.207 1.207 18 H -0.198 1.198 19 H -0.198 1.198 20 H 0.043 0.957 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.157 0.843 24 H 0.161 0.839 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.010 0.990 32 H 0.027 0.973 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.562 -3.388 -11.097 12.467 hybrid contribution 1.296 -0.666 -0.203 1.472 sum 5.858 -4.054 -11.300 13.358 Atomic orbital electron populations 1.21571 0.94848 1.01690 0.99826 1.21451 0.95561 0.94202 0.90118 0.96600 1.21396 0.92018 0.91143 0.96116 0.89672 1.58783 1.66893 1.02741 1.08231 1.22368 0.97223 1.01120 0.98196 1.21558 1.00263 0.99515 0.93129 1.21951 0.88532 0.97878 0.98593 1.62311 1.06436 1.53452 1.02364 1.19565 0.94123 0.92371 0.88162 1.22730 1.36811 0.96834 1.09873 0.93780 1.27167 0.93533 1.09987 0.92245 1.70915 1.37314 1.14075 1.34805 0.83025 0.76804 0.70350 0.76674 1.20744 1.19827 1.19780 0.95720 0.92109 0.91657 0.84252 0.83910 0.92748 0.89412 0.90277 0.90899 0.97081 0.92974 0.99006 0.97296 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 8.60 71.98 0.62 -4.23 16 2 C 0.10 3.75 1.76 44.94 0.08 3.83 16 3 H 0.02 0.72 6.57 -2.39 -0.02 0.71 16 4 C 0.11 3.08 3.16 44.97 0.14 3.22 16 5 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 6 N -0.84 -21.97 8.38 -168.46 -1.41 -23.39 16 7 C -0.15 -3.82 5.67 30.67 0.17 -3.65 16 8 C -0.11 -2.96 5.76 30.65 0.18 -2.78 16 9 C 0.06 2.29 5.14 86.33 0.44 2.73 16 10 N -0.52 -22.29 3.99 -875.64 -3.50 -25.78 16 11 C 0.18 9.81 3.89 85.56 0.33 10.14 16 12 C -0.62 -35.36 7.58 25.60 0.19 -35.17 16 13 H 0.04 2.51 5.84 -2.91 -0.02 2.49 16 14 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 15 N -0.93 -58.08 13.65 21.45 0.29 -57.78 16 16 Si 1.11 51.11 29.90 68.60 2.05 53.16 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H 0.02 1.14 6.24 -2.39 -0.01 1.12 16 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.06 2.53 7.59 -2.39 -0.02 2.51 16 23 H 0.34 6.93 9.04 -89.69 -0.81 6.11 16 24 H 0.35 9.93 6.76 -89.69 -0.61 9.33 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.87 6.90 -2.39 -0.02 1.86 16 29 H 0.01 0.48 7.03 -2.39 -0.02 0.46 16 30 H 0.05 2.08 8.06 -2.39 -0.02 2.06 16 31 H -0.01 -0.46 7.93 -2.39 -0.02 -0.48 16 32 H 0.01 0.51 6.19 -2.38 -0.01 0.50 16 33 H 0.26 16.16 7.22 -92.71 -0.67 15.49 16 Total: -1.00 -63.64 250.34 -0.16 -63.80 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.21 Total: 17.20 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 2.62 Total: -27.21 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -4.61 Total: -106.95 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -63.64 -0.16 -63.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306998377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.266 kcal (2) G-P(sol) polarization free energy of solvation -63.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds