Wall clock time and date at job start Mon Mar 30 2020 02:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.45113 * 2 1 4 4 N 1.46848 * 109.46126 * 240.02022 * 2 1 3 5 5 C 1.46845 * 111.19518 * 178.24095 * 4 2 1 6 6 C 1.53166 * 109.55463 * 61.74755 * 5 4 2 7 7 C 1.53120 * 109.20873 * 300.85535 * 6 5 4 8 8 C 1.53037 * 109.45849 * 119.96970 * 2 1 3 9 9 H 1.08997 * 109.53826 * 59.23650 * 8 2 1 10 10 N 1.46900 * 109.50725 * 299.13537 * 8 2 1 11 11 C 1.46892 * 111.00190 * 155.19894 * 10 8 2 12 12 C 1.50697 * 109.47204 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00259 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00165 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00251 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00205 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47153 * 90.00009 * 16 14 12 18 18 H 1.48497 * 109.47163 * 210.00267 * 16 14 12 19 19 H 1.48504 * 109.46509 * 330.00315 * 16 14 12 20 20 H 1.08999 * 109.47199 * 300.02807 * 1 2 3 21 21 H 1.09000 * 109.46900 * 60.03141 * 1 2 3 22 22 H 1.09007 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.00896 * 111.00453 * 302.34341 * 4 2 1 24 24 H 1.09003 * 109.45905 * 181.76430 * 5 4 2 25 25 H 1.09002 * 109.46166 * 301.73872 * 5 4 2 26 26 H 1.09004 * 109.59002 * 180.90917 * 6 5 4 27 27 H 1.08997 * 109.49280 * 60.74777 * 6 5 4 28 28 H 1.09002 * 109.52427 * 297.69078 * 7 6 5 29 29 H 1.08995 * 109.52208 * 177.56397 * 7 6 5 30 30 H 1.00899 * 110.99402 * 279.15478 * 10 8 2 31 31 H 1.08997 * 109.47514 * 300.00506 * 11 10 8 32 32 H 1.09002 * 109.46993 * 59.99913 * 11 10 8 33 33 H 0.97007 * 120.00431 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0193 -0.6919 -1.1993 5 6 3.4865 -0.6778 -1.2590 6 6 4.0560 -1.4193 -0.0459 7 6 3.5709 -0.7360 1.2356 8 6 2.0399 -0.7208 1.2500 9 1 1.6659 -1.7446 1.2585 10 7 1.5676 -0.0163 2.4494 11 6 1.5063 -0.9236 3.6030 12 6 1.0195 -0.1669 4.8119 13 1 0.7799 0.8831 4.7314 14 6 0.8808 -0.8149 6.0210 15 7 0.4555 -0.1547 7.0759 16 14 1.2957 -2.6309 6.1606 17 1 2.7272 -2.7851 6.5244 18 1 0.4486 -3.2530 7.2096 19 1 1.0413 -3.2981 4.8585 20 1 -0.3633 0.5143 0.8897 21 1 -0.3633 0.5134 -0.8903 22 1 -0.3633 -1.0277 0.0005 23 1 1.6647 -1.6355 -1.2425 24 1 3.8174 -1.1700 -2.1735 25 1 3.8403 0.3532 -1.2530 26 1 5.1452 -1.3953 -0.0811 27 1 3.7138 -2.4541 -0.0585 28 1 3.9457 0.2871 1.2672 29 1 3.9379 -1.2852 2.1026 30 1 2.1473 0.7849 2.6498 31 1 0.8202 -1.7421 3.3856 32 1 2.4997 -1.3256 3.8022 33 1 0.3575 -0.6106 7.9265 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307178612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:37 Heat of formation + Delta-G solvation = -35.797449 kcal Electronic energy + Delta-G solvation = -13093.008994 eV Core-core repulsion = 10958.681393 eV Total energy + Delta-G solvation = -2134.327600 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31285 -36.50563 -34.50942 -33.51590 -31.47158 -28.77690 -27.08537 -24.22244 -22.87564 -22.27020 -21.47481 -18.98776 -16.90449 -16.45677 -16.04074 -15.89381 -15.68710 -15.30579 -14.65861 -14.37377 -13.88752 -13.63612 -13.46224 -12.79427 -12.70778 -12.61675 -12.50774 -12.09938 -11.93912 -11.86126 -11.66052 -11.56724 -11.45013 -10.84807 -9.47975 -8.94146 -8.33221 -6.37489 1.29999 1.32363 1.43333 2.30110 3.00510 3.26145 3.55699 3.70897 4.01389 4.02315 4.26192 4.37322 4.44131 4.55881 4.69751 4.78982 4.84358 4.93480 4.97084 5.05223 5.09391 5.19597 5.25323 5.32468 5.49385 5.53546 5.89279 6.14012 6.49360 6.54212 6.64825 6.75081 7.27555 8.83535 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049045 B = 0.008900 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.769587 B = 3145.407843 C = 3409.665621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.105 3.895 3 H 0.072 0.928 4 N -0.679 5.679 5 C 0.059 3.941 6 C -0.146 4.146 7 C -0.149 4.149 8 C 0.056 3.944 9 H 0.058 0.942 10 N -0.674 5.674 11 C 0.180 3.820 12 C -0.528 4.528 13 H 0.038 0.962 14 C 0.009 3.991 15 N -0.946 5.946 16 Si 0.950 3.050 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.253 1.253 20 H 0.054 0.946 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.343 0.657 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.335 0.665 31 H 0.020 0.980 32 H -0.019 1.019 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 -4.472 -16.206 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.006 4.006 3 H 0.091 0.909 4 N -0.308 5.308 5 C -0.071 4.071 6 C -0.186 4.186 7 C -0.189 4.189 8 C -0.056 4.056 9 H 0.077 0.923 10 N -0.304 5.304 11 C 0.052 3.948 12 C -0.566 4.566 13 H 0.057 0.943 14 C -0.189 4.189 15 N -0.586 5.586 16 Si 0.773 3.227 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.177 1.177 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.161 0.839 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.152 0.848 31 H 0.038 0.962 32 H -0.001 1.001 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.749 -4.001 -16.605 18.022 hybrid contribution 1.167 -1.243 1.825 2.498 sum 6.916 -5.244 -14.780 17.140 Atomic orbital electron populations 1.21597 0.94045 1.01447 1.01568 1.21351 0.95723 0.97480 0.86058 0.90943 1.60857 1.09287 1.22593 1.38067 1.22097 0.86876 1.00890 0.97207 1.22229 1.01864 0.99581 0.94882 1.22305 0.96679 1.01221 0.98658 1.22444 0.93061 0.97686 0.92386 0.92345 1.60464 1.56390 1.09863 1.03644 1.19698 0.93683 0.92717 0.88746 1.21349 1.44170 0.97330 0.93741 0.94325 1.25861 0.94560 1.03342 0.95132 1.70048 1.48322 1.38823 1.01452 0.85680 0.78733 0.79517 0.78756 1.19207 1.20421 1.17719 0.92685 0.91768 0.93521 0.83921 0.88713 0.91078 0.90237 0.91997 0.91735 0.93771 0.84773 0.96223 1.00142 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.32 71.98 0.67 -3.00 16 2 C 0.10 2.87 2.74 44.94 0.12 3.00 16 3 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 4 N -0.68 -15.21 6.50 -491.44 -3.20 -18.40 16 5 C 0.06 1.12 6.56 86.37 0.57 1.68 16 6 C -0.15 -3.04 6.09 30.69 0.19 -2.85 16 7 C -0.15 -4.18 5.25 30.68 0.16 -4.02 16 8 C 0.06 1.80 2.05 44.97 0.09 1.90 16 9 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 10 N -0.67 -27.43 5.51 -495.33 -2.73 -30.16 16 11 C 0.18 8.73 4.31 85.56 0.37 9.10 16 12 C -0.53 -30.99 9.87 25.60 0.25 -30.74 16 13 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 14 C 0.01 0.51 5.47 84.65 0.46 0.98 16 15 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 16 Si 0.95 44.65 27.47 68.60 1.88 46.54 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 20 H 0.05 1.84 7.63 -2.39 -0.02 1.83 16 21 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 23 H 0.34 7.12 8.79 -89.70 -0.79 6.33 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 29 H 0.04 1.39 7.52 -2.39 -0.02 1.37 16 30 H 0.33 13.55 8.44 -89.69 -0.76 12.80 16 31 H 0.02 0.97 7.11 -2.39 -0.02 0.96 16 32 H -0.02 -0.91 6.91 -2.39 -0.02 -0.92 16 33 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -64.06 261.53 -1.38 -65.44 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.52 Total: 19.90 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 2.88 Total: -23.96 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -5.63 Total: -107.92 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -64.06 -1.38 -65.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307178612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.639 kcal (2) G-P(sol) polarization free energy of solvation -64.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds