Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 108.86693 * 2 1 4 4 C 1.53704 * 108.95264 * 241.29843 * 2 1 3 5 5 N 1.48062 * 112.47040 * 197.87648 * 4 2 1 6 6 C 1.44574 * 113.85609 * 318.31740 * 5 4 2 7 7 C 1.54209 * 108.84755 * 94.22932 * 6 5 4 8 8 N 1.40013 * 112.08287 * 281.18164 * 7 6 5 9 9 C 1.46904 * 110.99908 * 188.09512 * 8 7 6 10 10 C 1.50696 * 109.46794 * 66.04441 * 9 8 7 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47911 * 114.06429 * 61.80907 * 8 7 6 19 19 H 1.08997 * 109.46976 * 178.70362 * 1 2 3 20 20 H 1.09007 * 109.46842 * 298.70114 * 1 2 3 21 21 H 1.09000 * 109.47368 * 58.70167 * 1 2 3 22 22 H 1.08996 * 108.88359 * 77.10651 * 4 2 1 23 23 H 1.08997 * 108.80293 * 318.59755 * 4 2 1 24 24 H 1.00900 * 111.00265 * 192.19837 * 5 4 2 25 25 H 1.09000 * 109.57406 * 334.42233 * 6 5 4 26 26 H 1.09001 * 109.67970 * 214.10087 * 6 5 4 27 27 H 1.08996 * 108.95805 * 160.51091 * 7 6 5 28 28 H 1.08997 * 108.95983 * 41.85717 * 7 6 5 29 29 H 1.09005 * 109.47078 * 306.04726 * 9 8 7 30 30 H 1.09002 * 109.47005 * 186.04941 * 9 8 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.63172 * 39.78068 * 18 8 7 33 33 H 1.09006 * 109.62889 * 160.37109 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8825 1.0314 0.0000 4 6 2.0292 -0.6981 -1.2751 5 7 3.4445 -1.1205 -1.1719 6 6 4.3021 -0.1423 -0.5412 7 6 4.4088 -0.4688 0.9622 8 7 3.2821 -0.0413 1.6749 9 6 3.4877 -0.1882 3.1221 10 6 4.5754 0.7523 3.5729 11 1 5.0647 1.3952 2.8563 12 6 4.9451 0.7928 4.9007 13 7 5.8941 1.6139 5.2942 14 14 4.0982 -0.3187 6.1403 15 1 2.9161 0.3802 6.7053 16 1 3.6599 -1.5676 5.4670 17 1 5.0456 -0.6524 7.2341 18 6 2.0199 -0.6852 1.2508 19 1 -0.3633 -1.0274 -0.0232 20 1 -0.3633 0.4936 0.9015 21 1 -0.3634 0.5339 -0.8781 22 1 1.9261 -0.0125 -2.1161 23 1 1.4113 -1.5770 -1.4593 24 1 3.8076 -1.3919 -2.0734 25 1 3.8767 0.8531 -0.6693 26 1 5.2932 -0.1769 -0.9936 27 1 5.2927 0.0220 1.3693 28 1 4.5168 -1.5466 1.0836 29 1 3.7792 -1.2146 3.3453 30 1 2.5619 0.0488 3.6465 31 1 6.1539 1.6426 6.2283 32 1 2.1985 -1.7405 1.0443 33 1 1.2743 -0.5845 2.0395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307182536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = 7.127408 kcal Electronic energy + Delta-G solvation = -13281.946250 eV Core-core repulsion = 11149.480011 eV Total energy + Delta-G solvation = -2132.466239 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.84723 -35.07075 -33.52095 -32.31265 -28.59601 -27.33584 -25.19528 -24.29296 -21.55268 -19.79908 -19.18382 -16.80275 -16.21644 -15.22446 -14.81240 -14.39544 -14.11333 -13.70819 -12.98109 -12.59137 -12.42310 -12.27848 -11.83653 -11.48940 -11.05602 -10.99637 -10.82648 -10.58172 -10.33642 -10.12753 -10.02970 -9.71646 -9.21282 -8.52623 -8.06241 -7.11588 -6.01668 -3.98288 3.31556 3.38742 3.42152 4.41811 4.45919 4.81632 5.07616 5.25895 5.32562 5.44132 5.64026 5.67559 5.82061 5.92357 5.93605 6.03059 6.11385 6.14548 6.34583 6.41644 6.66486 6.68221 6.83504 6.99979 7.09191 7.38671 7.65839 7.70313 8.06228 8.49163 8.72911 9.06711 9.60888 11.11472 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047290 B = 0.009878 C = 0.008837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.946271 B = 2833.808500 C = 3167.641203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.074 3.926 5 N -0.705 5.705 6 C 0.064 3.936 7 C 0.084 3.916 8 N -0.544 5.544 9 C 0.167 3.833 10 C -0.508 4.508 11 H 0.080 0.920 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.267 1.267 17 H -0.287 1.287 18 C 0.072 3.928 19 H 0.051 0.949 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.023 0.977 23 H 0.064 0.936 24 H 0.337 0.663 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.014 0.986 29 H -0.013 1.013 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.037 0.963 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -4.931 -11.271 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.055 4.055 5 N -0.336 5.336 6 C -0.066 4.066 7 C -0.046 4.046 8 N -0.268 5.268 9 C 0.041 3.959 10 C -0.546 4.546 11 H 0.098 0.902 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.192 1.192 17 H -0.213 1.213 18 C -0.056 4.056 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.154 0.846 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.032 0.968 29 H 0.005 0.995 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.874 -4.714 -10.630 14.043 hybrid contribution -0.214 -0.706 0.208 0.767 sum -8.088 -5.420 -10.422 14.262 Atomic orbital electron populations 1.21831 0.95216 1.01355 1.01591 1.21060 0.94856 1.01044 0.94389 0.90222 1.22240 0.88932 0.98012 0.96281 1.59092 1.02202 1.44985 1.27340 1.21867 0.95144 0.93734 0.95861 1.20890 0.94765 0.97389 0.91588 1.59072 1.01767 1.59503 1.06414 1.20135 0.97089 0.95380 0.83246 1.21091 1.17890 1.21348 0.94315 0.90188 1.24906 0.94944 0.95346 0.98215 1.69901 1.30067 1.37608 1.16551 0.86861 0.79685 0.81823 0.81401 1.20207 1.19227 1.21256 1.21756 0.92498 0.95986 0.95326 0.92969 0.92249 0.93168 0.95916 0.91749 0.84583 0.93541 0.91894 0.89594 0.96813 0.99490 0.96022 0.92737 0.94470 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.85 37.16 0.33 -1.40 16 2 C -0.09 -1.42 2.25 -91.36 -0.21 -1.63 16 3 H 0.08 1.35 7.23 -51.93 -0.38 0.97 16 4 C 0.07 0.99 5.87 -2.82 -0.02 0.97 16 5 N -0.70 -10.13 6.12 -113.49 -0.69 -10.82 16 6 C 0.06 1.04 6.19 -4.44 -0.03 1.01 16 7 C 0.08 1.72 4.91 -6.75 -0.03 1.69 16 8 N -0.54 -11.85 4.07 -241.20 -0.98 -12.83 16 9 C 0.17 4.20 3.79 -4.98 -0.02 4.18 16 10 C -0.51 -14.68 8.90 -34.44 -0.31 -14.98 16 11 H 0.08 2.50 7.33 -52.49 -0.38 2.11 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 14 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 C 0.07 1.31 4.85 -4.37 -0.02 1.29 16 19 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 20 H 0.06 0.74 8.02 -51.92 -0.42 0.32 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 0.80 7.95 -51.93 -0.41 0.38 16 24 H 0.34 3.95 8.89 -39.29 -0.35 3.61 16 25 H 0.05 0.79 6.93 -51.93 -0.36 0.43 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 1.96 6.43 -51.93 -0.33 1.62 16 28 H 0.01 0.30 8.07 -51.93 -0.42 -0.12 16 29 H -0.01 -0.32 7.16 -51.93 -0.37 -0.70 16 30 H 0.02 0.54 7.13 -51.93 -0.37 0.17 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.04 0.69 7.57 -51.93 -0.39 0.30 16 33 H 0.06 1.13 7.11 -51.93 -0.37 0.76 16 LS Contribution 254.12 15.07 3.83 3.83 Total: -1.00 -30.64 254.12 -7.55 -38.19 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.41 Total: -1.45 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.40 Total: -6.99 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.90 Total: -50.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.64 -7.55 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307182536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.320 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds