Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 108.86693 * 2 1 4 4 C 1.53704 * 108.95264 * 241.29843 * 2 1 3 5 5 N 1.48062 * 112.47040 * 197.87648 * 4 2 1 6 6 C 1.44574 * 113.85609 * 318.31740 * 5 4 2 7 7 C 1.54209 * 108.84755 * 94.22932 * 6 5 4 8 8 N 1.40013 * 112.08287 * 281.18164 * 7 6 5 9 9 C 1.46904 * 110.99908 * 188.09512 * 8 7 6 10 10 C 1.50696 * 109.46794 * 66.04441 * 9 8 7 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47911 * 114.06429 * 61.80907 * 8 7 6 19 19 H 1.08997 * 109.46976 * 178.70362 * 1 2 3 20 20 H 1.09007 * 109.46842 * 298.70114 * 1 2 3 21 21 H 1.09000 * 109.47368 * 58.70167 * 1 2 3 22 22 H 1.08996 * 108.88359 * 77.10651 * 4 2 1 23 23 H 1.08997 * 108.80293 * 318.59755 * 4 2 1 24 24 H 1.00900 * 111.00265 * 192.19837 * 5 4 2 25 25 H 1.09000 * 109.57406 * 334.42233 * 6 5 4 26 26 H 1.09001 * 109.67970 * 214.10087 * 6 5 4 27 27 H 1.08996 * 108.95805 * 160.51091 * 7 6 5 28 28 H 1.08997 * 108.95983 * 41.85717 * 7 6 5 29 29 H 1.09005 * 109.47078 * 306.04726 * 9 8 7 30 30 H 1.09002 * 109.47005 * 186.04941 * 9 8 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.63172 * 39.78068 * 18 8 7 33 33 H 1.09006 * 109.62889 * 160.37109 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8825 1.0314 0.0000 4 6 2.0292 -0.6981 -1.2751 5 7 3.4445 -1.1205 -1.1719 6 6 4.3021 -0.1423 -0.5412 7 6 4.4088 -0.4688 0.9622 8 7 3.2821 -0.0413 1.6749 9 6 3.4877 -0.1882 3.1221 10 6 4.5754 0.7523 3.5729 11 1 5.0647 1.3952 2.8563 12 6 4.9451 0.7928 4.9007 13 7 5.8941 1.6139 5.2942 14 14 4.0982 -0.3187 6.1403 15 1 2.9161 0.3802 6.7053 16 1 3.6599 -1.5676 5.4670 17 1 5.0456 -0.6524 7.2341 18 6 2.0199 -0.6852 1.2508 19 1 -0.3633 -1.0274 -0.0232 20 1 -0.3633 0.4936 0.9015 21 1 -0.3634 0.5339 -0.8781 22 1 1.9261 -0.0125 -2.1161 23 1 1.4113 -1.5770 -1.4593 24 1 3.8076 -1.3919 -2.0734 25 1 3.8767 0.8531 -0.6693 26 1 5.2932 -0.1769 -0.9936 27 1 5.2927 0.0220 1.3693 28 1 4.5168 -1.5466 1.0836 29 1 3.7792 -1.2146 3.3453 30 1 2.5619 0.0488 3.6465 31 1 6.1539 1.6426 6.2283 32 1 2.1985 -1.7405 1.0443 33 1 1.2743 -0.5845 2.0395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307182536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = -16.234154 kcal Electronic energy + Delta-G solvation = -13282.959284 eV Core-core repulsion = 11149.480011 eV Total energy + Delta-G solvation = -2133.479272 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.30069 -36.62529 -34.75502 -34.47977 -30.42690 -28.82322 -26.53852 -25.76864 -23.35337 -21.45403 -20.45694 -18.94623 -17.54911 -16.67371 -16.34171 -16.18910 -15.56469 -15.48042 -14.53278 -14.11890 -14.00504 -13.51373 -13.30705 -13.22592 -12.75250 -12.46924 -12.25531 -12.07764 -11.90417 -11.82104 -11.60252 -11.33251 -11.28159 -10.78302 -9.22629 -8.87277 -8.29125 -6.32174 1.33564 1.35259 1.46445 2.33889 3.03585 3.21865 3.36050 3.89596 4.07725 4.22889 4.35255 4.44928 4.50588 4.67765 4.71572 4.80531 4.82096 4.87659 4.96437 5.02229 5.13290 5.20726 5.28297 5.34863 5.48667 5.56530 6.03310 6.19264 6.60574 6.65453 6.71834 6.86534 7.31816 8.87382 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047290 B = 0.009878 C = 0.008837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.946271 B = 2833.808500 C = 3167.641203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.057 0.943 4 C 0.075 3.925 5 N -0.711 5.711 6 C 0.079 3.921 7 C 0.087 3.913 8 N -0.556 5.556 9 C 0.177 3.823 10 C -0.516 4.516 11 H 0.038 0.962 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.948 3.052 15 H -0.263 1.263 16 H -0.255 1.255 17 H -0.280 1.280 18 C 0.074 3.926 19 H 0.066 0.934 20 H 0.052 0.948 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.356 0.644 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.004 0.996 29 H -0.019 1.019 30 H 0.027 0.973 31 H 0.267 0.733 32 H 0.036 0.964 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 -6.332 -12.230 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.075 0.925 4 C -0.053 4.053 5 N -0.345 5.345 6 C -0.051 4.051 7 C -0.044 4.044 8 N -0.280 5.280 9 C 0.050 3.950 10 C -0.555 4.555 11 H 0.056 0.944 12 C -0.190 4.190 13 N -0.588 5.588 14 Si 0.771 3.229 15 H -0.188 1.188 16 H -0.179 1.179 17 H -0.205 1.205 18 C -0.053 4.053 19 H 0.085 0.915 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.060 0.940 23 H 0.101 0.899 24 H 0.176 0.824 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.022 0.978 29 H -0.002 1.002 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.869 -6.123 -11.632 16.437 hybrid contribution 0.449 -0.228 0.439 0.668 sum -9.420 -6.351 -11.193 15.948 Atomic orbital electron populations 1.21771 0.92650 1.02565 1.02308 1.21022 0.96998 0.99448 0.93715 0.92460 1.22283 0.88240 0.99089 0.95695 1.58946 1.02648 1.44214 1.28657 1.21594 0.96819 0.93693 0.93002 1.20860 0.93094 0.96074 0.94397 1.59067 1.03585 1.60689 1.04657 1.19910 0.95644 0.93677 0.85780 1.21282 1.18802 1.21419 0.93951 0.94374 1.25847 0.95624 0.96988 1.00492 1.70049 1.31814 1.39583 1.17352 0.85707 0.78827 0.79933 0.78426 1.18765 1.17938 1.20528 1.21865 0.90513 0.95990 0.96940 0.91538 0.92857 0.91162 0.94021 0.89883 0.82392 0.94348 0.89925 0.93331 0.97826 1.00153 0.95501 0.92396 0.94573 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.85 71.98 0.64 -2.23 16 2 C -0.09 -2.59 2.25 -11.27 -0.03 -2.61 16 3 H 0.06 1.87 7.23 -2.39 -0.02 1.86 16 4 C 0.08 1.75 5.87 86.32 0.51 2.26 16 5 N -0.71 -18.63 6.12 -512.98 -3.14 -21.77 16 6 C 0.08 2.51 6.19 87.15 0.54 3.05 16 7 C 0.09 3.61 4.91 87.96 0.43 4.04 16 8 N -0.56 -24.45 4.07 -917.01 -3.74 -28.18 16 9 C 0.18 8.95 3.79 85.55 0.32 9.27 16 10 C -0.52 -30.89 8.90 25.60 0.23 -30.66 16 11 H 0.04 2.53 7.33 -2.91 -0.02 2.51 16 12 C 0.01 0.46 5.47 84.66 0.46 0.93 16 13 N -0.95 -60.25 13.96 21.45 0.30 -59.96 16 14 Si 0.95 45.24 27.47 68.60 1.88 47.12 16 15 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 C 0.07 2.60 4.85 85.39 0.41 3.01 16 19 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 20 H 0.05 1.20 8.02 -2.38 -0.02 1.18 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.08 1.69 7.95 -2.39 -0.02 1.67 16 24 H 0.36 7.19 8.89 -89.69 -0.80 6.40 16 25 H 0.04 1.28 6.93 -2.39 -0.02 1.26 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.05 2.35 6.43 -2.39 -0.02 2.33 16 28 H 0.00 0.16 8.07 -2.39 -0.02 0.14 16 29 H -0.02 -0.99 7.16 -2.38 -0.02 -1.00 16 30 H 0.03 1.33 7.13 -2.39 -0.02 1.31 16 31 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.04 1.28 7.57 -2.39 -0.02 1.26 16 33 H 0.06 2.19 7.11 -2.38 -0.02 2.18 16 Total: -1.00 -67.62 254.12 -0.95 -68.57 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.22 Total: 7.16 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 3.52 Total: -12.94 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -6.58 Total: -109.90 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -67.62 -0.95 -68.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307182536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.335 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds