Wall clock time and date at job start Mon Mar 30 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.49448 * 2 1 4 4 C 1.53189 * 109.49714 * 239.93569 * 2 1 3 5 5 N 1.46997 * 108.74070 * 294.65174 * 4 2 1 6 6 C 1.36934 * 120.61207 * 126.38395 * 5 4 2 7 7 H 1.08004 * 120.00152 * 207.68388 * 6 5 4 8 8 C 1.38812 * 120.00259 * 27.68940 * 6 5 4 9 9 N 1.31621 * 119.99669 * 17.35684 * 8 6 5 10 10 Si 1.86800 * 120.00279 * 197.35755 * 8 6 5 11 11 H 1.48494 * 109.47092 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47143 * 120.00024 * 10 8 6 13 13 H 1.48498 * 109.47158 * 239.99755 * 10 8 6 14 14 C 1.46921 * 118.75451 * 306.41190 * 5 4 2 15 15 C 1.53191 * 108.77606 * 53.60549 * 14 5 4 16 16 C 1.53039 * 109.49999 * 120.06487 * 2 1 3 17 17 H 1.08991 * 109.46030 * 178.59494 * 16 2 1 18 18 N 1.46905 * 109.45830 * 298.56782 * 16 2 1 19 19 H 1.08994 * 109.47237 * 59.99929 * 1 2 3 20 20 H 1.09001 * 109.47242 * 299.99559 * 1 2 3 21 21 H 1.09005 * 109.47061 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46911 * 60.00370 * 3 2 1 23 23 H 1.09008 * 109.46822 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47508 * 300.00092 * 3 2 1 25 25 H 1.09007 * 109.58232 * 54.46977 * 4 2 1 26 26 H 1.08998 * 109.58451 * 174.89433 * 4 2 1 27 27 H 0.97008 * 119.99888 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.58884 * 293.82043 * 14 5 4 29 29 H 1.09000 * 109.58419 * 173.39530 * 14 5 4 30 30 H 1.09003 * 109.49759 * 185.41061 * 15 14 5 31 31 H 1.09006 * 109.50013 * 65.31797 * 15 14 5 32 32 H 1.00899 * 110.99814 * 179.97438 * 18 16 2 33 33 H 1.00900 * 111.00070 * 303.94765 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6516 -2.1385 -1.1690 6 6 0.9632 -2.7317 -2.1933 7 1 0.3073 -3.5657 -1.9914 8 6 1.1083 -2.2613 -3.4912 9 7 2.1330 -1.4964 -3.8032 10 14 -0.1507 -2.7138 -4.7949 11 1 -1.1977 -3.5779 -4.1932 12 1 -0.7756 -1.4774 -5.3298 13 1 0.5209 -3.4462 -5.8985 14 6 2.0141 -2.9040 0.0315 15 6 1.5031 -2.1554 1.2665 16 6 2.0409 -0.7227 1.2485 17 1 3.1305 -0.7442 1.2353 18 7 1.5799 -0.0118 2.4486 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.6775 1.9563 0.8901 23 1 3.1307 1.4418 0.0005 24 1 1.6775 1.9563 -0.8900 25 1 1.6006 -0.2724 -2.1390 26 1 3.1274 -0.6458 -1.2982 27 1 2.2342 -1.1674 -4.7101 28 1 3.0980 -3.0042 0.0876 29 1 1.5555 -3.8918 -0.0128 30 1 1.8481 -2.6622 2.1678 31 1 0.4133 -2.1351 1.2547 32 1 1.9040 -0.4699 3.2871 33 1 1.8687 0.9548 2.4296 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307213248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:12 Heat of formation + Delta-G solvation = 11.264894 kcal Electronic energy + Delta-G solvation = -13806.892635 eV Core-core repulsion = 11674.605811 eV Total energy + Delta-G solvation = -2132.286824 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.70623 -34.34656 -32.29756 -31.49369 -28.68151 -26.47209 -25.76247 -24.27857 -21.63942 -20.49432 -17.59932 -16.63563 -15.44466 -14.84338 -14.47160 -13.93820 -13.51941 -13.20808 -12.93472 -12.36168 -12.12585 -11.58894 -11.33029 -11.18169 -10.90412 -10.77288 -10.55594 -10.48432 -10.10367 -9.93947 -9.71812 -9.34631 -9.32142 -8.41544 -8.22653 -6.60334 -5.73764 -3.14885 3.40128 3.48125 3.50462 4.54076 4.95663 5.37014 5.41793 5.50017 5.67973 5.77557 5.96487 6.14843 6.20147 6.33629 6.41731 6.50006 6.51862 6.60359 6.66028 6.78041 7.00206 7.01844 7.14538 7.24841 7.44995 7.58529 7.73515 7.80547 7.86976 8.50515 9.26810 9.90785 10.47851 11.34742 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047878 B = 0.012374 C = 0.011371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.683091 B = 2262.181735 C = 2461.753129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 C -0.138 4.138 4 C 0.183 3.817 5 N -0.589 5.589 6 C -0.247 4.247 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.904 5.904 10 Si 0.899 3.101 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.145 3.855 15 C -0.127 4.127 16 C 0.108 3.892 17 H 0.023 0.977 18 N -0.847 5.847 19 H 0.037 0.963 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.013 0.987 27 H 0.252 0.748 28 H 0.014 0.986 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.329 0.671 33 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 3.243 8.788 9.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.196 4.196 4 C 0.057 3.943 5 N -0.311 5.311 6 C -0.376 4.376 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.548 5.548 10 Si 0.729 3.271 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.018 3.982 15 C -0.167 4.167 16 C -0.002 4.002 17 H 0.040 0.960 18 N -0.377 5.377 19 H 0.056 0.944 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.967 3.111 8.350 8.963 hybrid contribution 0.541 -0.006 -0.529 0.757 sum -0.426 3.105 7.821 8.426 Atomic orbital electron populations 1.21574 0.94368 1.02043 0.99229 1.21260 0.96791 0.93969 0.96543 1.21809 0.99969 0.96938 1.00883 1.20863 0.95841 0.83539 0.94079 1.44031 1.65227 1.05790 1.16077 1.19215 1.17724 1.14872 0.85824 0.91731 1.25005 0.97089 1.00679 0.96925 1.70050 1.27543 1.38671 1.18584 0.86267 0.81302 0.77721 0.81791 1.20255 1.21604 1.21844 1.20900 0.96169 0.94341 0.86773 1.22108 1.01869 0.94500 0.98207 1.21238 0.95214 0.94063 0.89702 0.95952 1.58877 1.68453 1.06139 1.04216 0.94373 0.93753 0.91941 0.93441 0.93697 0.92759 0.89245 0.96910 0.93795 0.96857 0.92764 0.93794 0.91151 0.85962 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 7.84 37.16 0.29 -1.98 16 2 C -0.08 -1.62 0.59 -154.39 -0.09 -1.71 16 3 C -0.14 -2.31 8.12 37.16 0.30 -2.01 16 4 C 0.18 4.43 3.99 -3.67 -0.01 4.42 16 5 N -0.59 -14.93 2.43 -172.27 -0.42 -15.35 16 6 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 7 H 0.06 1.77 7.89 -52.48 -0.41 1.35 16 8 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 9 N -0.90 -26.52 11.19 55.49 0.62 -25.89 16 10 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 15 C -0.13 -2.34 5.31 -26.61 -0.14 -2.48 16 16 C 0.11 1.91 2.43 -67.67 -0.16 1.75 16 17 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 18 N -0.85 -12.29 8.51 -4.63 -0.04 -12.32 16 19 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 20 H 0.04 0.80 7.65 -51.93 -0.40 0.40 16 21 H 0.06 1.35 5.97 -51.93 -0.31 1.04 16 22 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 23 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.09 2.44 6.04 -51.92 -0.31 2.12 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.37 6.33 -51.93 -0.33 1.04 16 32 H 0.33 4.13 9.04 -39.29 -0.36 3.77 16 33 H 0.33 4.41 6.99 -39.29 -0.27 4.13 16 LS Contribution 252.04 15.07 3.80 3.80 Total: -1.00 -29.13 252.04 -6.38 -35.51 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.24 Total: 3.24 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.07 Total: -5.93 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.16 Total: -53.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.13 -6.38 -35.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307213248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.773 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds