Wall clock time and date at job start Mon Mar 30 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.49448 * 2 1 4 4 C 1.53189 * 109.49714 * 239.93569 * 2 1 3 5 5 N 1.46997 * 108.74070 * 294.65174 * 4 2 1 6 6 C 1.36934 * 120.61207 * 126.38395 * 5 4 2 7 7 H 1.08004 * 120.00152 * 207.68388 * 6 5 4 8 8 C 1.38812 * 120.00259 * 27.68940 * 6 5 4 9 9 N 1.31621 * 119.99669 * 17.35684 * 8 6 5 10 10 Si 1.86800 * 120.00279 * 197.35755 * 8 6 5 11 11 H 1.48494 * 109.47092 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47143 * 120.00024 * 10 8 6 13 13 H 1.48498 * 109.47158 * 239.99755 * 10 8 6 14 14 C 1.46921 * 118.75451 * 306.41190 * 5 4 2 15 15 C 1.53191 * 108.77606 * 53.60549 * 14 5 4 16 16 C 1.53039 * 109.49999 * 120.06487 * 2 1 3 17 17 H 1.08991 * 109.46030 * 178.59494 * 16 2 1 18 18 N 1.46905 * 109.45830 * 298.56782 * 16 2 1 19 19 H 1.08994 * 109.47237 * 59.99929 * 1 2 3 20 20 H 1.09001 * 109.47242 * 299.99559 * 1 2 3 21 21 H 1.09005 * 109.47061 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46911 * 60.00370 * 3 2 1 23 23 H 1.09008 * 109.46822 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47508 * 300.00092 * 3 2 1 25 25 H 1.09007 * 109.58232 * 54.46977 * 4 2 1 26 26 H 1.08998 * 109.58451 * 174.89433 * 4 2 1 27 27 H 0.97008 * 119.99888 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.58884 * 293.82043 * 14 5 4 29 29 H 1.09000 * 109.58419 * 173.39530 * 14 5 4 30 30 H 1.09003 * 109.49759 * 185.41061 * 15 14 5 31 31 H 1.09006 * 109.50013 * 65.31797 * 15 14 5 32 32 H 1.00899 * 110.99814 * 179.97438 * 18 16 2 33 33 H 1.00900 * 111.00070 * 303.94765 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6516 -2.1385 -1.1690 6 6 0.9632 -2.7317 -2.1933 7 1 0.3073 -3.5657 -1.9914 8 6 1.1083 -2.2613 -3.4912 9 7 2.1330 -1.4964 -3.8032 10 14 -0.1507 -2.7138 -4.7949 11 1 -1.1977 -3.5779 -4.1932 12 1 -0.7756 -1.4774 -5.3298 13 1 0.5209 -3.4462 -5.8985 14 6 2.0141 -2.9040 0.0315 15 6 1.5031 -2.1554 1.2665 16 6 2.0409 -0.7227 1.2485 17 1 3.1305 -0.7442 1.2353 18 7 1.5799 -0.0118 2.4486 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.6775 1.9563 0.8901 23 1 3.1307 1.4418 0.0005 24 1 1.6775 1.9563 -0.8900 25 1 1.6006 -0.2724 -2.1390 26 1 3.1274 -0.6458 -1.2982 27 1 2.2342 -1.1674 -4.7101 28 1 3.0980 -3.0042 0.0876 29 1 1.5555 -3.8918 -0.0128 30 1 1.8481 -2.6622 2.1678 31 1 0.4133 -2.1351 1.2547 32 1 1.9040 -0.4699 3.2871 33 1 1.8687 0.9548 2.4296 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307213248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:12 Heat of formation + Delta-G solvation = -8.314912 kcal Electronic energy + Delta-G solvation = -13807.741679 eV Core-core repulsion = 11674.605811 eV Total energy + Delta-G solvation = -2133.135868 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.32139 -36.16194 -33.89479 -33.29835 -30.38960 -28.00381 -27.57354 -26.09155 -23.32938 -22.22865 -19.32780 -18.51541 -16.96087 -16.62383 -15.97811 -15.68359 -15.30797 -14.93394 -14.56469 -14.05631 -13.63386 -13.16945 -13.04462 -12.86734 -12.73463 -12.58153 -12.36145 -12.21707 -11.88709 -11.73040 -11.49467 -11.04840 -10.93138 -10.52149 -9.45543 -8.65530 -7.86035 -5.30130 1.44583 1.46770 1.57126 2.51432 3.27786 3.65565 3.75057 3.95677 4.06828 4.27185 4.47566 4.57490 4.67572 4.82616 4.86178 4.92942 5.00977 5.06592 5.14561 5.16000 5.35790 5.44349 5.51890 5.55807 5.61306 5.73468 5.82615 6.36336 6.41346 6.77185 7.16477 7.88305 8.40228 9.20314 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047878 B = 0.012374 C = 0.011371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.683091 B = 2262.181735 C = 2461.753129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.080 4.080 3 C -0.133 4.133 4 C 0.192 3.808 5 N -0.606 5.606 6 C -0.255 4.255 7 H 0.064 0.936 8 C -0.051 4.051 9 N -0.936 5.936 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.139 3.861 15 C -0.117 4.117 16 C 0.117 3.883 17 H 0.018 0.982 18 N -0.840 5.840 19 H 0.023 0.977 20 H 0.067 0.933 21 H 0.040 0.960 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.053 0.947 26 H -0.014 1.014 27 H 0.249 0.751 28 H 0.010 0.990 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.346 0.654 33 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 3.587 10.580 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 C -0.191 4.191 4 C 0.066 3.934 5 N -0.329 5.329 6 C -0.386 4.386 7 H 0.082 0.918 8 C -0.246 4.246 9 N -0.582 5.582 10 Si 0.790 3.210 11 H -0.191 1.191 12 H -0.217 1.217 13 H -0.219 1.219 14 C 0.013 3.987 15 C -0.156 4.156 16 C 0.005 3.995 17 H 0.036 0.964 18 N -0.372 5.372 19 H 0.042 0.958 20 H 0.086 0.914 21 H 0.059 0.941 22 H 0.097 0.903 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.611 3.449 10.186 10.875 hybrid contribution 0.776 -0.149 -1.046 1.311 sum -0.835 3.300 9.141 9.754 Atomic orbital electron populations 1.21464 0.94345 1.00725 0.99608 1.21114 0.96625 0.95287 0.95201 1.21763 1.00226 0.95092 1.01997 1.20646 0.93882 0.83626 0.95225 1.44280 1.65286 1.06624 1.16699 1.19508 1.17644 1.14715 0.86715 0.91808 1.25730 0.98765 1.01199 0.98876 1.70200 1.29230 1.40102 1.18705 0.85281 0.79208 0.77328 0.79136 1.19097 1.21735 1.21939 1.21060 0.96018 0.94657 0.86917 1.21945 1.01166 0.94957 0.97512 1.20990 0.94744 0.93614 0.90105 0.96432 1.58724 1.68233 1.06708 1.03527 0.95757 0.91434 0.94073 0.90350 0.93324 0.93614 0.92890 0.99644 0.94231 0.97239 0.92739 0.90671 0.91990 0.84071 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.98 7.84 71.98 0.56 -3.41 16 2 C -0.08 -3.03 0.59 -52.10 -0.03 -3.07 16 3 C -0.13 -4.21 8.12 71.98 0.58 -3.63 16 4 C 0.19 9.52 3.99 86.35 0.34 9.86 16 5 N -0.61 -31.14 2.43 -698.93 -1.70 -32.84 16 6 C -0.26 -14.37 9.58 84.03 0.81 -13.56 16 7 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 8 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 9 N -0.94 -56.56 11.19 21.65 0.24 -56.32 16 10 Si 0.96 45.88 29.59 68.60 2.03 47.91 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 C 0.14 5.96 6.52 86.36 0.56 6.52 16 15 C -0.12 -4.02 5.31 30.67 0.16 -3.85 16 16 C 0.12 3.83 2.43 44.94 0.11 3.94 16 17 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 18 N -0.84 -20.97 8.51 -168.57 -1.44 -22.41 16 19 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 20 H 0.07 2.25 7.65 -2.39 -0.02 2.23 16 21 H 0.04 1.73 5.97 -2.38 -0.01 1.72 16 22 H 0.08 2.00 6.56 -2.38 -0.02 1.98 16 23 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 2.99 6.04 -2.38 -0.01 2.98 16 26 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 27 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 2.27 7.93 -2.39 -0.02 2.26 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 2.28 6.33 -2.38 -0.02 2.26 16 32 H 0.35 7.10 9.04 -89.69 -0.81 6.29 16 33 H 0.35 7.57 6.99 -89.69 -0.63 6.94 16 Total: -1.00 -63.21 252.04 2.31 -60.90 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -0.34 Total: 12.43 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 3.52 Total: -9.67 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -2.89 Total: -111.56 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -63.21 2.31 -60.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307213248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.584 kcal (2) G-P(sol) polarization free energy of solvation -63.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds