Wall clock time and date at job start Mon Mar 30 2020 02:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47003 * 2 1 4 4 C 1.50699 * 109.47099 * 239.99550 * 2 1 3 5 5 H 1.07998 * 120.00183 * 245.42064 * 4 2 1 6 6 C 1.37872 * 119.99691 * 65.14958 * 4 2 1 7 7 N 1.31512 * 120.00264 * 355.40805 * 6 4 2 8 8 Si 1.86807 * 120.00087 * 175.40444 * 6 4 2 9 9 H 1.48503 * 109.46949 * 94.99892 * 8 6 4 10 10 H 1.48501 * 109.47232 * 215.00335 * 8 6 4 11 11 H 1.48506 * 109.46695 * 335.00421 * 8 6 4 12 12 N 1.46900 * 109.46702 * 119.99745 * 2 1 3 13 13 C 1.47482 * 110.99660 * 199.02631 * 12 2 1 14 14 C 1.53516 * 87.93249 * 138.70446 * 13 12 2 15 15 N 1.46898 * 114.34562 * 220.32119 * 14 13 12 16 16 C 1.46898 * 111.00151 * 159.00793 * 15 14 13 17 17 C 1.46906 * 110.99828 * 282.95473 * 15 14 13 18 18 C 1.47477 * 111.00326 * 294.99784 * 12 2 1 19 19 H 1.08998 * 109.47154 * 54.98093 * 1 2 3 20 20 H 1.09007 * 109.47035 * 174.97855 * 1 2 3 21 21 H 1.09003 * 109.47305 * 294.97526 * 1 2 3 22 22 H 0.97009 * 120.00225 * 179.97438 * 7 6 4 23 23 H 1.08995 * 113.48147 * 253.47016 * 13 12 2 24 24 H 1.09001 * 113.47353 * 23.94629 * 13 12 2 25 25 H 1.09000 * 114.16796 * 87.62417 * 14 13 12 26 26 H 1.09001 * 109.47277 * 59.99394 * 16 15 14 27 27 H 1.08994 * 109.47143 * 179.97438 * 16 15 14 28 28 H 1.09001 * 109.47112 * 299.99834 * 16 15 14 29 29 H 1.09004 * 109.46587 * 64.98542 * 17 15 14 30 30 H 1.08998 * 109.47358 * 184.98308 * 17 15 14 31 31 H 1.08993 * 109.47206 * 304.99198 * 17 15 14 32 32 H 1.09005 * 113.47493 * 336.07042 * 18 12 2 33 33 H 1.09001 * 113.47441 * 106.47080 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5791 -1.6368 -1.1337 6 6 1.7890 -0.1808 -2.4798 7 7 1.0423 0.8946 -2.6042 8 14 2.5200 -0.9907 -3.9962 9 1 1.5262 -1.9225 -4.5874 10 1 2.8744 0.0522 -4.9922 11 1 3.7405 -1.7457 -3.6143 12 7 2.0196 -0.6925 1.1995 13 6 3.4230 -0.3359 1.4797 14 6 3.0496 -0.2643 2.9670 15 7 3.6696 0.8515 3.6940 16 6 2.9211 1.1623 4.9192 17 6 5.0784 0.5647 3.9963 18 6 1.6472 0.0421 2.4229 19 1 -0.3633 0.5897 -0.8416 20 1 -0.3633 -1.0238 -0.0900 21 1 -0.3634 0.4339 0.9316 22 1 0.8714 1.2675 -3.4833 23 1 4.1284 -1.1335 1.2471 24 1 3.7189 0.6254 1.0597 25 1 3.1262 -1.2161 3.4927 26 1 2.9071 0.2869 5.5684 27 1 3.4019 1.9915 5.4381 28 1 1.8991 1.4389 4.6602 29 1 5.6425 0.4944 3.0663 30 1 5.4887 1.3663 4.6104 31 1 5.1492 -0.3794 4.5364 32 1 1.4693 1.1043 2.2544 33 1 0.8470 -0.4346 2.9890 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307333489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:26 Heat of formation + Delta-G solvation = 43.033807 kcal Electronic energy + Delta-G solvation = -13127.738895 eV Core-core repulsion = 10996.829674 eV Total energy + Delta-G solvation = -2130.909221 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.57919 -35.91456 -33.23032 -30.22575 -27.65925 -26.13140 -25.54405 -24.23339 -22.72990 -19.75988 -18.97206 -16.42849 -15.58773 -15.33395 -14.66804 -14.37488 -14.02475 -13.13501 -12.83518 -12.67184 -12.28621 -11.80344 -11.58008 -11.51001 -11.40914 -11.04888 -10.80320 -10.55957 -10.23311 -10.00367 -9.80172 -9.55904 -8.93865 -8.37828 -8.18552 -7.70694 -5.98522 -4.01638 3.33012 3.39420 3.44064 4.13236 4.45472 4.85729 5.12736 5.30979 5.33956 5.45884 5.51627 5.64020 5.72559 5.93059 5.97500 6.04488 6.25395 6.28278 6.48120 6.55710 6.71715 6.84586 7.06858 7.18653 7.34429 7.39677 7.47569 7.86601 8.05565 8.29680 8.55054 9.05018 9.62977 11.09521 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053893 B = 0.008813 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.425143 B = 3176.343127 C = 3464.372676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.181 3.819 3 H 0.011 0.989 4 C -0.501 4.501 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.467 5.467 13 C 0.031 3.969 14 C 0.036 3.964 15 N -0.536 5.536 16 C 0.027 3.973 17 C 0.027 3.973 18 C 0.012 3.988 19 H 0.078 0.922 20 H 0.034 0.966 21 H 0.007 0.993 22 H 0.260 0.740 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 0.174 11.236 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.074 3.926 3 H 0.029 0.971 4 C -0.539 4.539 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.191 5.191 13 C -0.098 4.098 14 C -0.072 4.072 15 N -0.261 5.261 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.118 4.118 19 H 0.097 0.903 20 H 0.053 0.947 21 H 0.026 0.974 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.863 0.016 10.645 11.324 hybrid contribution 0.529 -0.200 -0.354 0.667 sum 4.392 -0.184 10.291 11.190 Atomic orbital electron populations 1.21762 0.97787 1.00193 0.98939 1.19791 0.92644 0.92658 0.87483 0.97127 1.21045 1.34704 1.08334 0.89843 0.92085 1.24944 0.95186 0.95159 0.98994 1.69926 1.37716 1.22180 1.23496 0.86515 0.79525 0.78955 0.82605 1.20786 1.21263 1.19872 1.68956 1.03457 1.44361 1.02326 1.23534 0.94339 1.00494 0.91455 1.23504 0.96983 0.91765 0.94954 1.62218 1.02303 1.39628 1.21946 1.22312 0.99384 0.99527 0.90947 1.22320 0.89585 0.99078 1.01164 1.23680 0.94889 0.98566 0.94660 0.90298 0.94654 0.97370 0.93035 0.91267 0.91041 0.91324 0.96055 0.91853 0.91285 0.91205 0.91908 0.95958 0.91439 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.02 37.16 0.34 -2.90 16 2 C 0.18 4.74 1.61 -68.86 -0.11 4.63 16 3 H 0.01 0.31 7.56 -51.93 -0.39 -0.08 16 4 C -0.50 -14.22 8.49 -34.44 -0.29 -14.51 16 5 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 6 C 0.06 1.65 5.36 -17.82 -0.10 1.56 16 7 N -0.89 -26.07 11.58 55.43 0.64 -25.42 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.47 -10.56 6.12 -238.00 -1.46 -12.01 16 13 C 0.03 0.63 7.03 -7.54 -0.05 0.58 16 14 C 0.04 0.61 3.44 -67.50 -0.23 0.38 16 15 N -0.54 -8.00 4.98 -242.84 -1.21 -9.21 16 16 C 0.03 0.33 9.43 60.06 0.57 0.90 16 17 C 0.03 0.34 9.54 60.07 0.57 0.91 16 18 C 0.01 0.22 5.38 -7.55 -0.04 0.18 16 19 H 0.08 2.14 6.44 -51.93 -0.33 1.81 16 20 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 21 H 0.01 0.17 7.19 -51.93 -0.37 -0.21 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 24 H 0.07 1.54 7.62 -51.93 -0.40 1.14 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 28 H 0.07 0.87 7.51 -51.93 -0.39 0.48 16 29 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 30 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 31 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 32 H 0.07 1.34 7.85 -51.93 -0.41 0.93 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 266.12 15.07 4.01 4.01 Total: -1.00 -29.44 266.12 -8.01 -37.45 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.63 Total: -3.29 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 0.65 Total: -8.29 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -2.02 Total: -46.65 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.44 -8.01 -37.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307333489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.487 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds