Wall clock time and date at job start Mon Mar 30 2020 02:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47003 * 2 1 4 4 C 1.50699 * 109.47099 * 239.99550 * 2 1 3 5 5 H 1.07998 * 120.00183 * 245.42064 * 4 2 1 6 6 C 1.37872 * 119.99691 * 65.14958 * 4 2 1 7 7 N 1.31512 * 120.00264 * 355.40805 * 6 4 2 8 8 Si 1.86807 * 120.00087 * 175.40444 * 6 4 2 9 9 H 1.48503 * 109.46949 * 94.99892 * 8 6 4 10 10 H 1.48501 * 109.47232 * 215.00335 * 8 6 4 11 11 H 1.48506 * 109.46695 * 335.00421 * 8 6 4 12 12 N 1.46900 * 109.46702 * 119.99745 * 2 1 3 13 13 C 1.47482 * 110.99660 * 199.02631 * 12 2 1 14 14 C 1.53516 * 87.93249 * 138.70446 * 13 12 2 15 15 N 1.46898 * 114.34562 * 220.32119 * 14 13 12 16 16 C 1.46898 * 111.00151 * 159.00793 * 15 14 13 17 17 C 1.46906 * 110.99828 * 282.95473 * 15 14 13 18 18 C 1.47477 * 111.00326 * 294.99784 * 12 2 1 19 19 H 1.08998 * 109.47154 * 54.98093 * 1 2 3 20 20 H 1.09007 * 109.47035 * 174.97855 * 1 2 3 21 21 H 1.09003 * 109.47305 * 294.97526 * 1 2 3 22 22 H 0.97009 * 120.00225 * 179.97438 * 7 6 4 23 23 H 1.08995 * 113.48147 * 253.47016 * 13 12 2 24 24 H 1.09001 * 113.47353 * 23.94629 * 13 12 2 25 25 H 1.09000 * 114.16796 * 87.62417 * 14 13 12 26 26 H 1.09001 * 109.47277 * 59.99394 * 16 15 14 27 27 H 1.08994 * 109.47143 * 179.97438 * 16 15 14 28 28 H 1.09001 * 109.47112 * 299.99834 * 16 15 14 29 29 H 1.09004 * 109.46587 * 64.98542 * 17 15 14 30 30 H 1.08998 * 109.47358 * 184.98308 * 17 15 14 31 31 H 1.08993 * 109.47206 * 304.99198 * 17 15 14 32 32 H 1.09005 * 113.47493 * 336.07042 * 18 12 2 33 33 H 1.09001 * 113.47441 * 106.47080 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5791 -1.6368 -1.1337 6 6 1.7890 -0.1808 -2.4798 7 7 1.0423 0.8946 -2.6042 8 14 2.5200 -0.9907 -3.9962 9 1 1.5262 -1.9225 -4.5874 10 1 2.8744 0.0522 -4.9922 11 1 3.7405 -1.7457 -3.6143 12 7 2.0196 -0.6925 1.1995 13 6 3.4230 -0.3359 1.4797 14 6 3.0496 -0.2643 2.9670 15 7 3.6696 0.8515 3.6940 16 6 2.9211 1.1623 4.9192 17 6 5.0784 0.5647 3.9963 18 6 1.6472 0.0421 2.4229 19 1 -0.3633 0.5897 -0.8416 20 1 -0.3633 -1.0238 -0.0900 21 1 -0.3634 0.4339 0.9316 22 1 0.8714 1.2675 -3.4833 23 1 4.1284 -1.1335 1.2471 24 1 3.7189 0.6254 1.0597 25 1 3.1262 -1.2161 3.4927 26 1 2.9071 0.2869 5.5684 27 1 3.4019 1.9915 5.4381 28 1 1.8991 1.4389 4.6602 29 1 5.6425 0.4944 3.0663 30 1 5.4887 1.3663 4.6104 31 1 5.1492 -0.3794 4.5364 32 1 1.4693 1.1043 2.2544 33 1 0.8470 -0.4346 2.9890 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307333489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:26 Heat of formation + Delta-G solvation = 20.842140 kcal Electronic energy + Delta-G solvation = -13128.701198 eV Core-core repulsion = 10996.829674 eV Total energy + Delta-G solvation = -2131.871524 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.14908 -37.26459 -35.22074 -32.21199 -28.74332 -27.76867 -27.38271 -25.98009 -24.09200 -21.59040 -20.48631 -18.46430 -17.29211 -16.79590 -16.22772 -15.88040 -15.36714 -14.80042 -14.46439 -14.37156 -13.51355 -13.47513 -13.09946 -12.97943 -12.74667 -12.68324 -12.51239 -12.46634 -12.24521 -11.95649 -11.42002 -11.26706 -10.96157 -10.52201 -9.56522 -9.28949 -8.14684 -6.25958 1.40741 1.40840 1.52795 2.41020 2.95172 3.14273 3.42764 3.56378 4.12101 4.28158 4.46177 4.51519 4.61664 4.70024 4.72874 4.76456 4.78564 4.80472 4.95346 4.97519 5.03729 5.05592 5.16109 5.40073 5.42527 5.69339 6.02495 6.13774 6.15539 6.24193 6.54763 6.86499 7.42974 8.92607 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053893 B = 0.008813 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.425143 B = 3176.343127 C = 3464.372676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.188 3.812 3 H -0.024 1.024 4 C -0.522 4.522 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.269 1.269 12 N -0.484 5.484 13 C 0.028 3.972 14 C 0.066 3.934 15 N -0.556 5.556 16 C 0.027 3.973 17 C 0.027 3.973 18 C 0.013 3.987 19 H 0.054 0.946 20 H 0.030 0.970 21 H 0.031 0.969 22 H 0.263 0.737 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -0.386 12.336 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 H -0.006 1.006 4 C -0.560 4.560 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.207 5.207 13 C -0.102 4.102 14 C -0.043 4.043 15 N -0.282 5.282 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.116 4.116 19 H 0.073 0.927 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.510 -0.545 11.768 12.615 hybrid contribution 0.345 0.009 -0.631 0.719 sum 4.855 -0.536 11.137 12.162 Atomic orbital electron populations 1.21584 0.97322 0.99506 0.99126 1.19559 0.92958 0.90795 0.88684 1.00626 1.21299 1.35094 1.08320 0.91280 0.92991 1.25751 0.95393 0.95731 1.01936 1.70044 1.38414 1.23248 1.24298 0.85492 0.78864 0.78147 0.78828 1.20051 1.20590 1.19373 1.68867 1.05119 1.44505 1.02199 1.23505 0.93114 0.99354 0.94247 1.23179 0.94755 0.93090 0.93274 1.62149 1.03694 1.38723 1.23598 1.22368 0.98964 1.00755 0.90005 1.22370 0.87950 1.00533 1.01253 1.23680 0.97041 0.97614 0.93269 0.92704 0.95086 0.95001 0.92831 0.91034 0.93226 0.89920 0.94778 0.89951 0.91844 0.92139 0.89834 0.94795 0.92644 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 9.02 71.98 0.65 -5.32 16 2 C 0.19 10.02 1.61 44.17 0.07 10.09 16 3 H -0.02 -1.41 7.56 -2.39 -0.02 -1.43 16 4 C -0.52 -30.10 8.49 25.60 0.22 -29.88 16 5 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 6 C 0.01 0.61 5.36 84.65 0.45 1.06 16 7 N -0.92 -54.48 11.58 21.44 0.25 -54.23 16 8 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 N -0.48 -21.84 6.12 -906.89 -5.55 -27.39 16 13 C 0.03 1.10 7.03 83.58 0.59 1.69 16 14 C 0.07 2.11 3.44 45.37 0.16 2.26 16 15 N -0.56 -15.43 4.98 -922.21 -4.60 -20.03 16 16 C 0.03 0.58 9.43 127.69 1.20 1.79 16 17 C 0.03 0.60 9.54 127.69 1.22 1.82 16 18 C 0.01 0.49 5.38 83.58 0.45 0.94 16 19 H 0.05 3.04 6.44 -2.39 -0.02 3.02 16 20 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 21 H 0.03 1.41 7.19 -2.39 -0.02 1.39 16 22 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 23 H 0.07 2.77 8.14 -2.39 -0.02 2.76 16 24 H 0.05 2.20 7.62 -2.39 -0.02 2.18 16 25 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16 28 H 0.06 1.45 7.51 -2.39 -0.02 1.43 16 29 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 30 H 0.08 1.53 8.03 -2.39 -0.02 1.51 16 31 H 0.03 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.06 2.19 7.85 -2.38 -0.02 2.17 16 33 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -62.89 266.12 -1.82 -64.70 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.05 Total: 5.62 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.01 Total: -15.54 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -9.90 Total: -101.65 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.89 -1.82 -64.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307333489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.544 kcal (2) G-P(sol) polarization free energy of solvation -62.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds